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546 Publikationen

2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Liebl W, Schlüter A (2014)
First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant.
Journal of Biotechnology 192: 154-155.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant.
Journal of Biotechnology 188: 136-137.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710114
Townsend PD, Jungwirth B, Pojer F, Bußmann M, Money VA, Cole ST, Pühler A, Tauch A, Bott M, Cann MJ, Pohl E (2014)
The Crystal Structures of Apo and cAMP-Bound GlxR from Corynebacterium glutamicum Reveal Structural and Dynamic Changes upon cAMP Binding in CRP/FNR Family Transcription Factors.
PloS one 9(12): 113265.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
Wendler S, Ortseifen V, Persicke M, Klein A, Neshat A, Niehaus K, Schneiker-Bekel S, Walter F, Wehmeier UF, Kalinowski J, Pühler A (2014)
Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110.
Journal of Biotechnology 191: 113-120.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676049
Schlüter A, Nordmann P, Bonnin RA, Millemann Y, Eikmeyer FG, Wibberg D, Pühler A, Poirel L (2014)
IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolates.
Antimicrobial Agents and Chemotherapy 58(7): 3768-3773.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, Becerra G, Ibáñez MI, Carmona MI, Escribano MP, Castillo F, Sczyrba A, Moreno-Vivián C, Blasco R, Pühler A, Schlüter A (2014)
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.
Journal of biotechnology 175: 67-68.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969 OA
Mentz A, Neshat A, Pfeifer-Sancar K, Pühler A, Rückert C, Kalinowski J (2013)
Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032.
BMC Genomics 14(1): 714.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193 OA
Eikmeyer FG, Rademacher A, Hanreich A, Hennig M, Jaenicke S, Maus I, Wibberg D, Zakrzewski M, Pühler A, Klocke M, Schlüter A (2013)
Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms.
Biotechnology for Biofuels 6(1): 49.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548270
Jungwirth B, Sala C, Kohl TA, Uplekar S, Baumbach J, Cole ST, Pühler A, Tauch A (2013)
High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum.
Microbiology 159(Pt_1): 12-22.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Wibberg D, Jelonek L, Rupp O, Kröber M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A (2013)
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
Journal of Biotechnology 167(2): 142-155.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis.
Journal of Biotechnology 168(4): 731-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler KAK, Rückert C, Schatschneider S, Vorhölter F-J, Szczepanowski R, Blank LM, Niehaus K, Goesmann A, Pühler A, Kalinowski J, Schmid A (2013)
Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil.
Journal of Biotechnology 168(4): 729-730.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
Wendler S, Hürtgen D, Kalinowski J, Klein A, Niehaus K, Schulte F, Schwientek P, Wehlmann H, Wehmeier UF, Pühler A (2013)
The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism.
Journal of Biotechnology 167(2): 178-189.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
Brinkrolf K, Rupp O, Laux H, Kollin F, Ernst W, Linke B, Kofler R, Romand S, Hesse F, Budach WE, Galosy S, Müller D, Noll T, Wienberg J, Jostock T, Leonard M, Grillari J, Tauch A, Goesmann A, Helk B, Mott JE, Pühler A, Borth N (2013)
Chinese hamster genome sequenced from sorted chromosomes.
Nature Biotechnology 31(8): 694-695.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645247
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, König H, Pühler A, Schlüter A (2013)
Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp Mb1 isolated from a production-scale biogas plant.
Journal of Biotechnology 168(4): 734-736.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2565642
Dagan T, Roettger M, Stucken K, Landan G, Koch R, Major P, Gould SB, Goremykin VV, Rippka R, de Marsac NT, Gugger M, Lockhart PJ, Allen JF, Brune I, Maus I, Pühler A, Martin WF (2013)
Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids.
Genome Biology And Evolution 5(1): 31-44.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605230
Hanreich A, Schimpf U, Zakrzewski M, Schlüter A, Benndorf D, Heyer R, Rapp E, Pühler A, Reichl U, Klocke M (2013)
Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation.
Systematic and Applied Microbiology 36(5): 330-338.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605244
Schatschneider S, Persicke M, Watt T, Hublik G, Pühler A, Niehaus K, Vorhölter F-J (2013)
Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100.
Journal of Biotechnology 167(2): 123-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Pühler A, Kalinowski J, Weber T (2013)
Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids.
Journal of Biotechnology 168(4): 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.
Journal of Biotechnology 168(1): 62-63.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557779
Weidner S, Baumgarth B, Göttfert M, Jaenicke S, Pühler A, Schneiker-Bekel S, Serrania J, Szczepanowski R, Becker A (2013)
Genome Sequence of Sinorhizobium meliloti Rm41.
Genome Announcements 1(1): e00013-12.
PUB | DOI | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557080
Bonnin RA, Poirel L, Nordmann P, Eikmeyer FG, Wibberg D, Pühler A, Schlüter A (2013)
Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa.
Journal of Antimicrobial Chemotherapy 68(5): 1060-1065.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207
Eikmeyer FG, Köfinger P, Poschenel A, Jünemann S, Zakrzewski M, Heinl S, Mayrhuber E, Grabherr R, Pühler A, Schwab H, Schlüter A (2013)
Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging.
Journal of Biotechnology 167(3): 334-343.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek P, Wendler S, Neshat A, Eirich C, Rückert C, Klein A, Wehmeier UF, Kalinowski J, Stoye J, Pühler A (2013)
Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media.
Journal of Biotechnology 167(2): 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, Escribano MP, Jaenicke S, Estepa J, Guijo MI, Martínez-Luque M, Macías D, Szczepanowski R, Becerra G, Ramirez S, Carmona MI, Gutiérrez O, Manso I, Pühler A, Castillo F, Moreno-Vivián C, Schlüter A, Blasco R (2013)
Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.
Environmental Microbiology 15(1): 253-270.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
Plassmeier J, Busche T, Molck S, Persicke M, Pühler A, Rückert C, Kalinowski J (2013)
A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways.
Journal of Biotechnology 163(2): 225-232.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2546244
Wibberg D, Szczepanowski R, Eikmeyer FG, Pühler A, Schlüter A (2013)
The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates.
Plasmid 69(2): 127-137.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A (2013)
MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
Journal of Biotechnology 167(2): 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553286
Jungbauer A, Scheper T, Pühler A (2012)
Current research and future perspectives of applied biotechnology.
Journal of Biotechnology 162(4): 355.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer FG, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A (2012)
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing.
Journal of Biotechnology 158(4): 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849
Weidner S, Becker A, Bonilla I, Jaenicke S, Lloret J, Margaret I, Pühler A, Ruiz-Sainz JE, Schneiker-Bekel S, Szczepanowski R, Vinardell JM, Zehner S, Göttfert M (2012)
Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103.
Journal of Bacteriology 194(6): 1617-1618.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2537690 OA
Vorhölter F-J, Wiggerich H-G, Scheidle H, Sidhu VK, Mrozek K, Küster H, Pühler A, Niehaus K (2012)
Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases.
BMC Microbiology 12(1): 239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279
Eikmeyer FG, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers LM, Brown CB, Top EM, Pühler A, Schlüter A (2012)
The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution.
Plasmid 68(1): 13-24.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)
Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage.
Journal of Biotechnology 161(2): 153-166.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060 OA
Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A (2012)
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.
BMC Genomics 13(1): 112.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher A, Zakrzewski M, Schlüter A, Schonberg M, Szczepanowski R, Goesmann A, Pühler A, Klocke M (2012)
Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing.
FEMS Microbiology Ecology 79(3): 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501307
Pietruszka J, Pühler A, Schembecker G (2012)
Research on industrial biotechnology within the CLIB-Graduate Cluster - Part I.
Journal of Biotechnology 159(3): 121-122.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
Meleady P, Hoffrogge R, Henry M, Rupp O, Bort JH, Clarke C, Brinkrolf K, Kelly S, Müller B, Doolan P, Hackl M, Beckmann T, Noll T, Grillari J, Barron N, Pühler A, Clynes M, Borth N (2012)
Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics.
Biotechnology and Bioengineering 109(6): 1386-1394.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl M, Jadhav V, Jakobi T, Rupp O, Brinkrolf K, Goesmann A, Pühler A, Noll T, Borth N, Grillari J (2012)
Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines.
Journal of Biotechnology 158(3): 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501774
Wendisch VF, Pühler A (2012)
Microbes and industrial biotechnology.
Journal of Biotechnology 158(4): 157-158.
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
Hain T, Ghai R, Billion A, Kuenne CT, Steinweg C, Izar B, Mohamed W, Mraheil M, Domann E, Schaffrath S, Kärst U, Goesmann A, Oehm S, Pühler A, Merkl R, Vorwerk S, Glaser P, Garrido P, Rusniok C, Buchrieser C, Goebel W, Chakraborty T (2012)
Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes.
BMC Genomics 13(1): 144.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, Tauch A, Köhler T, Brinkrolf K (2012)
Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10.
Eukaryotic Cell 11(12): 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269 OA
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C (2012)
Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae.
BMC Genomics 13(1): 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
Schork S, Schlüter A, Blom J, Schneiker-Bekel S, Pühler A, Goesmann A, Frosch M, Schoen C (2012)
Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198.
Journal of Bacteriology 194(18): 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, Schlüter A (2012)
Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester.
Journal of Bacteriology 194(19): 5487-5488.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513297
Pauling J, Rottger R, Neuner A, Salgado H, Collado-Vides J, Kalaghatgi P, Azevedo V, Tauch A, Pühler A, Baumbach J (2012)
On the trail of EHEC/EAEC-unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria.
Integrative Biology 4(7): 728-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
Schwientek P, Szczepanowski R, Rückert C, Stoye J, Pühler A (2011)
Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology.
Journal of Biotechnology 155(1): 68-77.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | PUB-ID: 2401477
Mattiasson B, Pühler A (2011)
Towards sustainable biotechnology.
Journal of Biotechnology 152(4): 113.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
Pothier JF, Vorhölter F-J, Blom J, Goesmann A, Pühler A, Smits TH, Duffy B (2011)
The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis.
FEMS Microbiology Letters 323(1): 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, Pühler A, Schlüter A (2011)
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Journal of Biotechnology 155(1): 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 

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