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76 Publikationen

2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2698163
Heins, Richard A, Cheng, Xiaoliang, Nath, Sangeeta, Deng, Kai, Bowen, Benjamin P, Chivian, Dylan C, Datta, Supratim, Friedland, Gregory D, D'Haeseleer, Patrik, Wu, Dongying, Tran-Gyamfi, Mary, Scullin, Chessa S, Singh, Seema, Shi, Weibing, Hamilton, Matthew G, Bendall, Matthew L, Sczyrba, Alexander, Thompson, John, Feldman, Taya, Guenther, Joel M, Gladden, John M, Cheng, Jan-Fang, Adams, Paul D, Rubin, Edward M, Simmons, Blake A, Sale, Kenneth L, Northen, Trent R, and Deutsch, Samuel. “Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry”. ACS chemical biology 9.9 (2014): 2082-2091.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672695
Swan, Brandon K., Chaffin, Mark D., Martinez-Garcia, Manuel, Morrison, Hilary G., Field, Erin K., Poulton, Nicole J., Masland, E. Dashiell P., Harris, Christopher C., Sczyrba, Alexander, Chain, Patrick S. G., Koren, Sergey, Woyke, Tanja, and Stepanauskas, Ramunas. “Genomic and metabolic diversity of marine group I thaumarchaeota in the mesopelagic of two subtropical gyres”. PloS one 9.4 (2014): 95380.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
Henrich, Birgit, Rumming, Madis, Sczyrba, Alexander, Velleuer, Eunike, Dietrich, Ralf, Gerlach, Wolfgang, Gombert, Michael, Rahn, Sebastian, Stoye, Jens, Borkhardt, Arndt, and Fischer, Ute. “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”. PLoS ONE 9.3 (2014): e92297.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
Wibberg, Daniel, Luque-Almagro, Víctor M., Igeño, M. Isabel, Bremges, Andreas, Roldán, M. Dolores, Merchán, Faustino, Sáez, Lara P., Guijo, M. Isabel, Manso, M. Isabel, Macías, Daniel, Cabello, Purificación, Becerra, Gracia, Ibáñez, M. Isabel, Carmona, M. Isabel, Escribano, M. Paz, Castillo, Francisco, Sczyrba, Alexander, Moreno-Vivián, Conrado, Blasco, Rafael, Pühler, Alfred, and Schlüter, Andreas. “Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”. Journal of biotechnology 175 (2014): 67-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | PUB-ID: 2909357
Gisbrecht, Andrej, Hammer, Barbara, Mokbel, Bassam, and Sczyrba, Alexander. “Nonlinear dimensionality reduction for cluster identification in metagenomic samples”. IV. 2013. 174-179.
PUB
 
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2623500
Gisbrecht, Andrej, Hammer, Barbara, Mokbel, Bassam, and Sczyrba, Alexander. “Nonlinear dimensionality reduction for cluster identification in metagenomic samples”. 17th International Conference on Information Visualisation IV 2013. Ed. Ebad Banissi. 2013. 174-179.
PUB
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2613567
Rinke, Christian, Schwientek, Patrick, Sczyrba, Alexander, Ivanova, Natalia N, Anderson, Iain J, Cheng, Jan-Fang, Darling, Aaron, Malfatti, Stephanie, Swan, Brandon K, Gies, Esther A, Dodsworth, Jeremy A, Hedlund, Brian P, Tsiamis, George, Sievert, Stefan M, Liu, Wen-Tso, Eisen, Jonathan A, Hallam, Steven J, Kyrpides, Nikos C, Stepanauskas, Ramunas, Rubin, Edward M, Hugenholtz, Philip, and Woyke, Tanja. “Insights into the phylogeny and coding potential of microbial dark matter”. Nature 499.7459 (2013): 431-437.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2563424
Campbell, James H., O'Donoghue, Patrick, Campbell, Alisha G., Schwientek, Patrick, Sczyrba, Alexander, Woyke, Tanja, Söll, Dieter, and Podar, Mircea. “UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota”. Proceedings of the National Academy of Sciences of the United States of America 110.14 (2013): 5540-5545.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2638234
Zaremba-Niedzwiedzka, Katarzyna, Viklund, Johan, Zhao, Weizhou, Ast, Jennifer, Sczyrba, Alexander, Woyke, Tanja, McMahon, Katherina, Bertilsson, Stefan, Stepanauskas, Ramunas, and Andersson, Siv Ge. “Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade”. Genome biology 14.11 (2013): R130.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641352
Kamke, Janine, Sczyrba, Alexander, Ivanova, Natalia, Schwientek, Patrick, Rinke, Christian, Mavromatis, Kostas, Woyke, Tanja, and Hentschel, Ute. “Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges”. The ISME journal 7.12 (2013): 2287-2300.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2563543
Campbell, Alisha G., Campbell, James H., Schwientek, Patrick, Woyke, Tanja, Sczyrba, Alexander, Allman, Steve, Beall, Clifford J., Griffen, Ann, Leys, Eugene, and Podar, Mircea. “Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity”. PLoS ONE 8.3 (2013): e59361.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2613623
Swan, Brandon K., Tupper, Ben, Sczyrba, Alexander, Lauro, Federico M., Martinez-Garcia, Manuel, González, José M., Luo, Haiwei, Wright, Jody J., Landry, Zachary C., Hanson, Niels W., Thompson, Brian P., Poulton, Nicole J., Schwientek, Patrick, Acinas, Silvia G., Giovannoni, Stephen J., Moran, Mary Ann, Hallam, Steven J., Cavicchioli, Ricardo, Woyke, Tanja, and Stepanauskas, Ramunas. “Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean”. Proceedings of the National Academy of Sciences of the United States of America 110.28 (2013): 11463-11468.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2518330
Garcia, Sarahi L, McMahon, Katherine D, Martinez-Garcia, Manuel, Srivastava, Abhishek, Sczyrba, Alexander, Stepanauskas, Ramunas, Grossart, Hans-Peter, Woyke, Tanja, and Warnecke, Falk. “Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton”. The ISME journal 7.1 (2012): 137-147.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2547307
El-Kalioby, Mohamed, Abouelhoda, Mohamed, Krüger, Jan, Giegerich, Robert, Sczyrba, Alexander, Wall, Dennis P, and Tonellato, Peter. “Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package”. BMC Bioinformatics 13.Suppl 17 (2012): S22.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2329885
Swan, Brandon K., Martinez-Garcia, Manuel, Preston, Christina M., Sczyrba, Alexander, Woyke, Tanja, Lamy, Dominique, Reinthaler, Thomas, Poulton, Nicole J., Masland, E. Dashiell P., Gomez, Monica Lluesma, Sieracki, Michael E., DeLong, Edward F., Herndl, Gerhard J., and Stepanauskas, Ramunas. “Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean”. Science 333.6047 (2011): 1296-1300.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2351462
Kim, Tae-Wan, Chokhawala, Harshal A., Hess, Matthias, Dana, Craig M., Baer, Zachary, Sczyrba, Alexander, Rubin, Edward M., Blanch, Harvey W., and Clark, Douglas S. “High-Throughput In Vitro Glycoside Hydrolase (HIGH) Screening for Enzyme Discovery”. Angewandte Chemie 123.47 (2011): 11411-11414.
PUB | DOI | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2789582
Sales, Christopher M., Mahendra, Shaily, Grostern, Ariel, Parales, Rebecca E, Goodwin, Lynne A, Woyke, Tanja, Nolan, Matt, Lapidus, Alla, Chertkov, Olga, Ovchinnikova, Galina, Sczyrba, Alexander, and Alvarez-Cohen, Lisa. “Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190”. Journal of Bacteriology 193.17 (2011): 4549-4550.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | GenBank
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410148
Woyke, Tanja, Sczyrba, Alexander, Lee, Janey, Rinke, Christian, Tighe, Damon, Clingenpeel, Scott, Malmstrom, Rex, Stepanauskas, Ramunas, and Cheng, Jan-Fang. “Decontamination of MDA Reagents for Single Cell Whole Genome Amplification”. PLoS ONE 6.10 (2011): e26161.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1991643
Hess, M., Sczyrba, Alexander, Egan, R., Kim, T. W., Chokhawala, H., Schroth, G., Luo, S., Clark, D. S., Chen, F., Zhang, T., Mackie, R. I., Pennacchio, L. A., Tringe, S. G., Visel, A., Woyke, T., Wang, Z., and Rubin, E. M. “Metagenomic discovery of biomass-degrading genes and genomes from cow rumen”. Science 331.6016 (2011): 463-467.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1991615
Gilbert, J. A., Meyer, F., Antonopoulos, D., Balaji, P., Brown, C. T., Desai, N., Eisen, J. A., Evers, D., Field, D., Feng, W., Huson, D., Jansson, J., Knight, R., Knight, J., Kolker, E., Konstantindis, K., Kostka, J., Kyrpides, N., Mackelprang, R., McHardy, A., Quince, C., Raes, J., Sczyrba, Alexander, Shade, A., and Stevens, R. “Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project”. Stand Genomic Sci 3.3 (2010): 243-248.
PUB | DOI | PubMed | Europe PMC
 

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