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76 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223 OA
P. Belmann, B. Fischer, J. Krüger, M. Procházka, H. Rasche, M. Prinz, M. Hanussek, M. Lang, F. Bartusch, B. Gläßle, et al., “de.NBI Cloud federation through ELIXIR AAI”, F1000Research, 2019, 8, : 842.
PUB | PDF | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934798
H. Pankoke, I. Maus, G. Loh, A. Huser, J. Seifert, A. Tilker, S. Hark, A. Sczyrba, S. Pelzer, and J. Kleinbolting, “F5Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.”, FEMS microbiology letters, 2019.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923 OA
J. Nelkner, C. Henke, T. W. Lin, W. Pätzold, J. Hassa, S. Jaenicke, R. Grosch, A. Pühler, A. Sczyrba, and A. Schlüter, “Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes”, Genes, 2019, 10, : 424.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933767
A. Fritz, P. Hofmann, S. Majda, E. Dahms, J. Dröge, J. Fiedler, T. R. Lesker, P. Belmann, M. Z. DeMaere, A. E. Darling, et al., “CAMISIM: simulating metagenomes and microbial communities”, Microbiome, 2019, 7, : 17.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Y. Stolze, A. Bremges, I. Maus, A. Pühler, A. Sczyrba, and A. Schlüter, “Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants”, Microbial Biotechnology, 2018, 11, 667-679.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
J. S. Celis, D. Wibberg, C. Ramírez-Portilla, O. Rupp, A. Sczyrba, A. Winkler, J. Kalinowski, and T. Wilke, “Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts”, GigaScience, 2018, 7, : giy075.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593 OA
M. Linden, M. Prochazka, I. Lappalainen, D. Bucik, P. Vyskocil, M. Kuba, S. Silén, P. Belmann, A. Sczyrba, S. Newhouse, et al., “Common ELIXIR Service for Researcher Authentication and Authorisation”, F1000Research, 2018, 7, : 1199.
PUB | DOI | Download (ext.) | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723
F. Meyer, P. Hofmann, P. Belmann, R. Garrido-Oter, A. Fritz, A. Sczyrba, and A. C. McHardy, “AMBER: Assessment of Metagenome BinnERs”, GigaScience, 2018, : giy069.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
L. Huang, J. Krüger, and A. Sczyrba, “Analyzing large scale genomic data on the cloud with Sparkhit”, Bioinformatics, 2018, 34, 1457-1465.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
I. Maus, M. Rumming, I. Bergmann, K. Heeg, M. Pohl, E. Nettmann, S. Jaenicke, J. Blom, A. Pühler, A. Schlüter, et al., “Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors”, Biotechnology for Biofuels, 2018, 11, : 167.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275
E. J. Fleming, T. Woyke, A. R. Donatello, M. M. M. Kuypers, A. Sczyrba, S. Littmann, and D. Emerson, “Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea”, Applied and Environmental Microbiology, 2018, 84, : e02239-17.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914959
P. da Schoren Costa, S. Bolzan de Campos, A. Albersmeier, P. Dirksen, A. L. Pereira Dresseno, O. J. Andrade Pais dos Santos, K. M. Lima Milani, R. M. Etto, A. G. Battistus, A. C. Peres Rodrigues da Costa, et al., “Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach”, Plant and Soil, 2018, 422, 467-478.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516 OA
I. Maus, A. Bremges, Y. Stolze, S. Hahnke, K. G. Cibis, D. E. Koeck, Y. S. Kim, J. Kreubel, J. Hassa, D. Wibberg, et al., “Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes”, Biotechnology for Biofuels, 2017, 10, : 264.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909153
J. Yu, J. Blom, A. Sczyrba, and A. Goesmann, “Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism”, Journal of Biotechnology, 2017, 257, 58-60.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556 OA
S. Jünemann, N. Kleinbölting, S. Jaenicke, C. Henke, J. Hassa, J. Nelkner, Y. Stolze, S. Albaum, A. Schlüter, A. Goesmann, et al., “Bioinformatics for NGS-based metagenomics and the application to biogas research”, Journal of Biotechnology, 2017, 261, 10-23.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2017 | Datenpublikation | PUB-ID: 2914921 OA
L. Huang, J. Krüger, and A. Sczyrba, Sparkhit evaluation data set, Bielefeld University, 2017.
PUB | Dateien verfügbar | DOI
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
A. Sczyrba, P. Hofmann, P. Belmann, D. Koslicki, S. Janssen, J. Dröge, I. Gregor, S. Majda, J. Fiedler, E. Dahms, et al., “Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software”, Nature Methods, 2017, 14, 1063-1071.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815 OA
Y. Stolze, A. Bremges, M. Rumming, C. Henke, I. Maus, A. Pühler, A. Sczyrba, and A. Schlüter, “Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants”, Biotechnology for Biofuels, 2016, 9, : 156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907633 OA
M. Lux, J. Krüger, C. Rinke, I. Maus, A. Schlüter, T. Woyke, A. Sczyrba, and B. Hammer, “acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data”, BMC Bioinformatics, 2016, 17, : 543.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904836
R. Heyer, D. Benndorf, F. Kohrs, J. De Vrieze, N. Boon, M. Hoffmann, E. Rapp, A. Schlüter, A. Sczyrba, and U. Reichl, “Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type”, Biotechnology for Biofuels, 2016, 9, : 155.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
I. Maus, K. G. Cibis, A. Bremges, Y. Stolze, D. Wibberg, G. Tomazetto, J. Blom, A. Sczyrba, H. König, A. Pühler, et al., “Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment”, Journal of Biotechnology, 2016, 232, 50-60.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
D. Wibberg, A. Bremges, T. Dammann-Kalinowski, I. Maus, M. I. Igeño, R. Vogelsang, C. König, V. M. Luque-Almagro, M. D. Roldán, A. Sczyrba, et al., “Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing”, Journal of Biotechnology, 2016, 232, 61-68.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418
S. B. Campos, B. B. Lisboa, F. A. O. Camargo, C. Bayer, A. Sczyrba, P. Dirksen, A. Albersmeier, J. Kalinowski, A. Beneduzi, P. B. Costa, et al., “Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems”, Soil Biology and Biochemistry, 2016, 96, 191-197.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902190
F. Stiefel, S. Fischer, A. Sczyrba, K. Otte, and F. Hesse, “miRNA profiling of high, low and non-producing CHO cells during biphasic fed-batch cultivation reveals process relevant targets for host cell engineering”, Journal of Biotechnology, 2016, 225, 31-43.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
A. Bremges, E. Singer, T. Woyke, and A. Sczyrba, “MeCorS: Metagenome-enabled error correction of single cell sequencing reads”, Bioinformatics, 2016, 32, 2199-2201.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900928
J. Nesme, W. Achouak, S. Agathos, M. Bailey, P. Baldrian, D. Brunel, A. Frostegard, T. Heulin, J. K. Jansson, E. Jurkevitch, et al., “Back to the future of soil metagenomics”, Frontiers in Microbiology, 2016, 7, : 73.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
T. Krahn, D. Wibberg, I. Maus, A. Winkler, S. Bontron, A. Sczyrba, P. Nordmann, A. Pühler, L. Poirel, and A. Schlüter, “Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.”, Antimicrobial Agents and Chemotherapy, 2016, 60, 3032-3040.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
I. Maus, D. E. Koeck, K. G. Cibis, S. Hahnke, Y. S. Kim, T. Langer, J. Kreubel, M. Erhard, A. Bremges, S. Off, et al., “Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates”, Biotechnology for Biofuels, 2016, 9, : 171.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
V. Ortseifen, Y. Stolze, I. Maus, A. Sczyrba, A. Bremges, S. Albaum, S. Jaenicke, J. Fracowiak, A. Pühler, and A. Schlüter, “An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant”, Journal of Biotechnology, 2016, 231, 268-279.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906 OA
A. Bremges, I. Maus, P. Belmann, F. G. Eikmeyer, A. Winkler, A. Albersmeier, A. Pühler, A. Schlüter, and A. Sczyrba, “Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant”, GigaScience, 2015, 4, : 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833
F. Kohrs, S. Wolter, D. Benndorf, R. Heyer, M. Hoffmann, E. Rapp, A. Bremges, A. Sczyrba, A. Schlüter, and U. Reichl, “Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities”, Proteomics, 2015, 15, 3585-3589.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726183
E. K. Field, A. Sczyrba, A. E. Lyman, C. C. Harris, T. Woyke, R. Stepanauskas, and D. Emerson, “Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount”, The ISME journal, 2015, 9, 857-870.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501
P. Belmann, J. Dröge, A. Bremges, A. C. McHardy, A. Sczyrba, and M. D. Barton, “Bioboxes: standardised containers for interchangeable bioinformatics software”, GigaScience, 2015, 4, : 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901612
M. Lux, A. Sczyrba, and B. Hammer, in 2015 International Joint Conference on Neural Networks (IJCNN), Institute Of Electrical & Electronics Engineers (Ieee), 2015.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726156
B. G. Paul, S. C. Bagby, E. Czornyj, D. Arambula, S. Handa, A. Sczyrba, P. Ghosh, J. F. Miller, and D. L. Valentine, “Targeted diversity generation by intraterrestrial archaea and archaeal viruses”, Nature Communications, 2015, 6, 6585.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901466
B. Osterholz, P. Wiebke, A. Fust, M. Rumming, A. Schlüter, and A. Sczyrba, in (Ed.: Julius Kühn-Institut, Bundesforschungsinstitut für Kulturpflanzen Institut für Epidemiologie und Pathogendiagnostik), 2015.
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2015 | Report | Veröffentlicht | PUB-ID: 2901613
M. Lux, B. Hammer, and A. Sczyrba, Automated Contamination Detection in Single-Cell Sequencing, Cold Spring Harbor Laboratory Press, 2015.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685992
H. Piao, M. Lachman, S. Malfatti, A. Sczyrba, B. Knierim, M. Auer, S. G. Tringe, R. I. Mackie, C. J. Yeoman, and M. Hess, “Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling”, Frontiers in Microbiology, 2014, 5.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2654433
J. Kamke, C. Rinke, P. Schwientek, K. Mavromatis, N. Ivanova, A. Sczyrba, T. Woyke, and U. Hentschel, “The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features”, PLoS ONE, 2014, 9, : e87353.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689051
T. W. Ghylin, S. L. Garcia, F. Moya, B. O. Oyserman, P. Schwientek, K. T. Forest, J. Mutschler, J. Dwulit-Smith, L. - K. Chan, M. Martinez-Garcia, et al., “Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage”, The ISME Journal, 2014, 8, 2503-2516.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2698163
R. A. Heins, X. Cheng, S. Nath, K. Deng, B. P. Bowen, D. C. Chivian, S. Datta, G. D. Friedland, P. D'Haeseleer, D. Wu, et al., “Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry”, ACS chemical biology, 2014, 9, 2082-2091.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672695
B. K. Swan, M. D. Chaffin, M. Martinez-Garcia, H. G. Morrison, E. K. Field, N. J. Poulton, E. D. P. Masland, C. C. Harris, A. Sczyrba, P. S. G. Chain, et al., “Genomic and metabolic diversity of marine group I thaumarchaeota in the mesopelagic of two subtropical gyres”, PloS one, 2014, 9, 95380.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
B. Henrich, M. Rumming, A. Sczyrba, E. Velleuer, R. Dietrich, W. Gerlach, M. Gombert, S. Rahn, J. Stoye, A. Borkhardt, et al., “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”, PLoS ONE, 2014, 9, e92297.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
D. Wibberg, V. M. Luque-Almagro, M. I. Igeño, A. Bremges, M. D. Roldán, F. Merchán, L. P. Sáez, M. I. Guijo, M. I. Manso, D. Macías, et al., “Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Journal of biotechnology, 2014, 175, 67-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | PUB-ID: 2909357
A. Gisbrecht, B. Hammer, B. Mokbel, and A. Sczyrba, in IV, 2013, p. 174-179.
PUB
 
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2623500
A. Gisbrecht, B. Hammer, B. Mokbel, and A. Sczyrba, in 17th International Conference on Information Visualisation IV 2013 (Ed.: E. Banissi), 2013, p. 174-179.
PUB
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2613567
C. Rinke, P. Schwientek, A. Sczyrba, N. N. Ivanova, I. J. Anderson, J. - F. Cheng, A. Darling, S. Malfatti, B. K. Swan, E. A. Gies, et al., “Insights into the phylogeny and coding potential of microbial dark matter”, Nature, 2013, 499, 431-437.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2563424
J. H. Campbell, P. O'Donoghue, A. G. Campbell, P. Schwientek, A. Sczyrba, T. Woyke, D. Söll, and M. Podar, “UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota”, Proceedings of the National Academy of Sciences of the United States of America, 2013, 110, 5540-5545.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641352
J. Kamke, A. Sczyrba, N. Ivanova, P. Schwientek, C. Rinke, K. Mavromatis, T. Woyke, and U. Hentschel, “Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges”, The ISME journal, 2013, 7, 2287-2300.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2638234
K. Zaremba-Niedzwiedzka, J. Viklund, W. Zhao, J. Ast, A. Sczyrba, T. Woyke, K. McMahon, S. Bertilsson, R. Stepanauskas, and S. G. Andersson, “Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade”, Genome biology, 2013, 14, R130.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2563543
A. G. Campbell, J. H. Campbell, P. Schwientek, T. Woyke, A. Sczyrba, S. Allman, C. J. Beall, A. Griffen, E. Leys, and M. Podar, “Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity”, PLoS ONE, 2013, 8, : e59361.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2613623
B. K. Swan, B. Tupper, A. Sczyrba, F. M. Lauro, M. Martinez-Garcia, J. M. González, H. Luo, J. J. Wright, Z. C. Landry, N. W. Hanson, et al., “Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean”, Proceedings of the National Academy of Sciences of the United States of America, 2013, 110, 11463-11468.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2518330
S. L. Garcia, K. D. McMahon, M. Martinez-Garcia, A. Srivastava, A. Sczyrba, R. Stepanauskas, H. - P. Grossart, T. Woyke, and F. Warnecke, “Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton”, The ISME journal, 2012, 7, 137-147.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2547307
M. El-Kalioby, M. Abouelhoda, J. Krüger, R. Giegerich, A. Sczyrba, D. P. Wall, and P. Tonellato, “Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package”, BMC Bioinformatics, 2012, 13, S22.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2329885
B. K. Swan, M. Martinez-Garcia, C. M. Preston, A. Sczyrba, T. Woyke, D. Lamy, T. Reinthaler, N. J. Poulton, E. D. P. Masland, M. L. Gomez, et al., “Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean”, Science, 2011, 333, 1296-1300.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2351462
T. - W. Kim, H. A. Chokhawala, M. Hess, C. M. Dana, Z. Baer, A. Sczyrba, E. M. Rubin, H. W. Blanch, and D. S. Clark, “High-Throughput In Vitro Glycoside Hydrolase (HIGH) Screening for Enzyme Discovery”, Angewandte Chemie, 2011, 123, 11411-11414.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2789582
C. M. Sales, S. Mahendra, A. Grostern, R. E. Parales, L. A. Goodwin, T. Woyke, M. Nolan, A. Lapidus, O. Chertkov, G. Ovchinnikova, et al., “Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190”, Journal of Bacteriology, 2011, 193, 4549-4550.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | GenBank
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410148
T. Woyke, A. Sczyrba, J. Lee, C. Rinke, D. Tighe, S. Clingenpeel, R. Malmstrom, R. Stepanauskas, and J. - F. Cheng, “Decontamination of MDA Reagents for Single Cell Whole Genome Amplification”, PLoS ONE, 2011, 6, e26161.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1991643
M. Hess, A. Sczyrba, R. Egan, T. W. Kim, H. Chokhawala, G. Schroth, S. Luo, D. S. Clark, F. Chen, T. Zhang, et al., “Metagenomic discovery of biomass-degrading genes and genomes from cow rumen”, Science, 2011, 331, 463-467.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1991615
J. A. Gilbert, F. Meyer, D. Antonopoulos, P. Balaji, C. T. Brown, N. Desai, J. A. Eisen, D. Evers, D. Field, W. Feng, et al., “Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project”, Stand Genomic Sci, 2010, 3, 243-248.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020 OA
A. - L. Lamprecht, T. Margaria, B. Steffen, A. Sczyrba, S. Hartmeier, and R. Giegerich, “GeneFisher-P: variations of GeneFisher as processes in Bio-jETI”, BMC Bioinformatics, 2008, 9, S13.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588303
A. Sczyrba, S. Konermann, and R. Giegerich, “Two interactive bioinformatics courses at the bielefeld university bioinformatics server”, BRIEFINGS IN BIOINFORMATICS, 2008, 9, 243-249.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599756 OA
M. Spitzer, S. Lorkowski, P. Cullen, A. Sczyrba, and G. Fuellen, “IsoSVM - Distinguishing isoforms and paralogs on the protein level”, BMC Bioinformatics, 2006, 7, 110.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613 OA
A. Sczyrba, M. Beckstette, A. H. Brivanlou, R. Giegerich, and C. R. Altmann, “XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis”, BMC Genomics, 2005, 6, 123.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529
M. Beckstette, J. T. Mailänder, R. J. Marhöfer, A. Sczyrba, E. Ohlebusch, R. Giegerich, and P. M. Selzer, “Genlight: Interactive high-throughput sequence analysis and comparative genomics”, Journal of Integrative Bioinformatics, 2004, 1, 0008.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536
M. Beckstette, A. Sczyrba, and P. M. Selzer, in Proceedings of the German Conference on Bioinformatics, Gi, Lecture Notes in Informatics, 2004, p. 179-186.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383561
A. Sczyrba, M. Beckstette, R. Giegerich, and C. Altman, in Proceedings of the German Conference on Bioinformatics, Gi, Lecture Notes in Informatics, 2004.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607400 OA
L. Taher, O. Rinner, S. Garg, A. Sczyrba, and B. Morgenstern, “AGenDA: gene prediction by cross-species sequence comparison”, Nucleic Acids Research, 2004, 32, W305-W308.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394 OA
J. Krüger, A. Sczyrba, S. Kurtz, and R. Giegerich, “e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences”, NUCLEIC ACIDS RESEARCH, 2004, 32, W301-W304.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
M. Dondrup, A. Goesmann, D. Bartels, J. Kalinowski, L. Krause, B. Linke, O. Rupp, A. Sczyrba, A. Pühler, and F. Meyer, “EMMA: a platform for consistent storage and efficient analysis of microarray data”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 135-146.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612470
B. Morgenstern, S. Goel, A. Sczyrba, and A. Dress, “AltAVisT: Comparing alternative multiple sequence alignments”, BIOINFORMATICS, 2003, 19, 425-426.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844 OA
A. Sczyrba, J. Krüger, H. Mersch, S. Kurtz, and R. Giegerich, “RNA-related tools on the Bielefeld Bioinformatics Server”, Nucleic Acids Research, 2003, 31, 3767-3770.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610494
L. Taher, O. Rinner, S. Garg, A. Sczyrba, M. Brudno, S. Batzoglou, and B. Morgenstern, “AGenDA: homology-based gene prediction”, BIOINFORMATICS, 2003, 19, 1575-1577.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1897716
S. Gopal, M. Schroeder, U. Pieper, A. Sczyrba, G. Aytekin-Kurban, S. Bekiranov, J. E. Fajardo, N. Eswar, R. Sanchez, A. Sali, et al., “Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome”, Nat Genet, 2001, 27, 337-340.
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616752
C. R. Altmann, E. Bell, A. Sczyrba, J. Pun, S. Bekiranov, T. Gaasterland, and A. H. Brivanlou, “Microarray-based analysis of early development in Xenopus laevis”, DEVELOPMENTAL BIOLOGY, 2001, 236, 64-75.
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1897767
T. Gaasterland, A. Sczyrba, E. Thomas, and G. Kurban, “MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region”, Genome Res, 2000, 10, 502-510.
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