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78 Publikationen

2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
Huang, Liren, Krüger, Jan, and Sczyrba, Alexander. “Analyzing large scale genomic data on the cloud with Sparkhit”. Bioinformatics 34.9 (2018): 1457-1465.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593
Linden, Mikael, Prochazka, Michal, Lappalainen, Ilkka, Bucik, Dominik, Vyskocil, Pavel, Kuba, Martin, Silén, Sami, Belmann, Peter, Sczyrba, Alexander, Newhouse, Steven, Matyska, Ludek, and Nyrönen, Tommi. “Common ELIXIR Service for Researcher Authentication and Authorisation”. F1000Research 7 (2018): 1199.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275
Fleming, E. J., Woyke, T., Donatello, A. R., Kuypers, M. M. M., Sczyrba, Alexander, Littmann, S., and Emerson, D. “Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea”. Applied and Environmental Microbiology 84.9 (2018): e02239-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914959
da Schoren Costa, Pedro, Bolzan de Campos, Samanta, Albersmeier, Andreas, Dirksen, Paul, Pereira Dresseno, André Luis, Andrade Pais dos Santos, Odair José, Lima Milani, Karina Maria, Etto, Rafael Mazer, Battistus, André Gustavo, Peres Rodrigues da Costa, Andréia Cristina, Martinez de Oliveira, André Luiz, Weigert Galvão, Carolina, Guimarães, Vandeir Francisco, Sczyrba, Alexander, Wendisch, Volker F., and Passaglia, Luciane. “Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach”. Plant and Soil 422.1-2 (2018): 467-478.
PUB | DOI | WoS
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik, Bremges, Andreas, Fritz, Adrian, Garrido-Oter, Ruben, Jørgensen, Tue Sparholt, Shapiro, Nicole, Blood, Philip D, Gurevich, Alexey, Bai, Yang, Turaev, Dmitrij, DeMaere, Matthew Z, Chikhi, Rayan, Nagarajan, Niranjan, Quince, Christopher, Meyer, Fernando, Balvočiūtė, Monika, Hansen, Lars Hestbjerg, Sørensen, Søren J, Chia, Burton K H, Denis, Bertrand, Froula, Jeff L, Wang, Zhong, Egan, Robert, Don Kang, Dongwan, Cook, Jeffrey J, Deltel, Charles, Beckstette, Michael, Lemaitre, Claire, Peterlongo, Pierre, Rizk, Guillaume, Lavenier, Dominique, Wu, Yu-Wei, Singer, Steven W, Jain, Chirag, Strous, Marc, Klingenberg, Heiner, Meinicke, Peter, Barton, Michael D, Lingner, Thomas, Lin, Hsin-Hung, Liao, Yu-Chieh, Silva, Genivaldo Gueiros Z, Cuevas, Daniel A, Edwards, Robert A, Saha, Surya, Piro, Vitor C, Renard, Bernhard Y, Pop, Mihai, Klenk, Hans-Peter, Göker, Markus, Kyrpides, Nikos C, Woyke, Tanja, Vorholt, Julia A, Schulze-Lefert, Paul, Rubin, Edward M, Darling, Aaron E, Rattei, Thomas, and McHardy, Alice C. “Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software”. Nature Methods 14.11 (2017): 1063-1071.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516 OA
Maus, Irena, Bremges, Andreas, Stolze, Yvonne, Hahnke, Sarah, Cibis, Katharina G., Koeck, Daniela E., Kim, Yong S., Kreubel, Jana, Hassa, Julia, Wibberg, Daniel, Weimann, Aaron, Off, Sandra, Stantscheff, Robbin, Zverlov, Vladimir V., Schwarz, Wolfgang H., König, Helmut, Liebl, Wolfgang, Scherer, Paul, McHardy, Alice C., Sczyrba, Alexander, Klocke, Michael, Pühler, Alfred, and Schlüter, Andreas. “Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes”. Biotechnology for Biofuels 10.1 (2017): 264.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909153
Yu, Jia, Blom, Jochen, Sczyrba, Alexander, and Goesmann, Alexander. “Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism”. Journal of Biotechnology 257 (2017): 58-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
Jünemann, Sebastian, Kleinbölting, Nils, Jaenicke, Sebastian, Henke, Christian, Hassa, Julia, Nelkner, Johanna, Stolze, Yvonne, Albaum, Stefan, Schlüter, Andreas, Goesmann, Alexander, Sczyrba, Alexander, and Stoye, Jens. “Bioinformatics for NGS-based metagenomics and the application to biogas research”. Journal of Biotechnology 261.SI (2017): 10-23.
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2017 | Datenpublikation | PUB-ID: 2914921 OA
Huang, Liren, Krüger, Jan, and Sczyrba, Alexander. Sparkhit evaluation data set. Bielefeld University, 2017.
PUB | Dateien verfügbar | DOI
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Maus, Irena, Koeck, Daniela E., Cibis, Katharina G., Hahnke, Sarah, Kim, Yong S., Langer, Thomas, Kreubel, Jana, Erhard, Marcel, Bremges, Andreas, Off, Sandra, Stolze, Yvonne, Jaenicke, Sebastian, Goesmann, Alexander, Sczyrba, Alexander, Scherer, Paul, König, Helmut, Schwarz, Wolfgang H., Zverlov, Vladimir V., Liebl, Wolfgang, Pühler, Alfred, Schlüter, Andreas, and Klocke, Michael. “Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates”. Biotechnology for Biofuels 9.1 (2016): 171.
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