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40 Publikationen

2017 | Konferenzbeitrag | PUB-ID: 2913690
Bayesian Collective Markov Random Fields for Subcellular Localization Prediction of Human Proteins
Zhu L, Ester M (2017)
In: Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17. ACM Press.
PUB | PDF | DOI
 
2015 | Zeitschriftenaufsatz | PUB-ID: 2765914
CellWhere: graphical display of interaction networks organized on subcellular localizations
Zhu L, Malatras A, Thorley M, Aghoghogbe I, Mer A, Duguez S, Butler-Browne G, Voit T, Duddy W (2015)
Nucleic Acids Research 43(W1): W571-W575.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Bielefelder E-Dissertation | PUB-ID: 2594322 PUB | PDF
 
2013 | Zeitschriftenaufsatz | PUB-ID: 2560811
Computational construction of specialized biological networks
Lee H-M, Dietz K-J, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(01): 1340003.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | PUB-ID: 2560817
Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets
Sommer B, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(01): 1340005.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | PUB-ID: 2374720
DAWIS-M.D. 2.0 - A Data Warehouse Information System for Metabolic Data
Hippe K, Kormeier B, Janowski SJ, Töpel T, Hofestädt R (2011)
In: Proceedings of the 7th International Symposium on Integrative Bioinformatics.
PUB
 
2011 | Sammelwerksbeitrag | PUB-ID: 2376427
Petri Nets and the Simulation of Metabolic Networks
Hofestädt R (2011)
In: Biological Petri Nets. Wingender E (Ed); Studies in health technology and informatics, 162 1. Edition. Amsterdam: IOS Press: 1-2.
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2011 | Sammelwerksbeitrag | PUB-ID: 2376491
Quantitative Modeling of Biochemical Networks
Hofestädt R, Thelen S (2011)
In: Biological Petri Nets. Wingender E (Ed); Studies in health technology and informatics, 162 1. Edition. Amsterdam: IOS Press: 3-16.
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2011 | Sammelwerksbeitrag | PUB-ID: 2376523
Quantitative Petri Net Model of Gene Regulated Metabolic Networks in the Cell
Chen M, Hofestädt R (2011)
In: Biological Petri Nets. Wingender E (Ed); Studies in health technology and informatics, 162 1. Edition. Amsterdam: IOS Press: 38-55.
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2011 | Zeitschriftenaufsatz | PUB-ID: 2290112
A Systematic Petri Net Approach for Multiple-Scale Modeling and Simulation of Biochemical Processes
Chen M, Hu M, Hofestädt R (2011)
Applied Biochemistry and Biotechnology 164(3): 338-352.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | PUB-ID: 2326407
Petri net models for the semi-automatic construction of large scale biological networks
Chen M, Hariharaputran S, Hofestädt R, Kormeier B, Spangardt S (2011)
Natural Computing 10(3): 1077-1097.
PUB | DOI | WoS
 
2011 | Zeitschriftenaufsatz | PUB-ID: 2408590
MyBioNet: interactively visualize, edit and merge biological networks on the Web
Huang D, Huang Y, Bai Y, Chen D, Hofestädt R, Klukas C, Chen M (2011)
Bioinformatics 27(23): 3321-3322.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | PUB-ID: 2458209
Fundamental Features of Metabolic Computing
Hofestädt R (2011)
In: Advances in Soft Computing: 10th Mexican International Conference on Artificial Intelligence, MICAI 2011, Puebla, Mexico, November 26 - December 4, 2011, Proceedings, Part II. Batyrshin I, Sidorov G (Eds); Lecture Notes in Computer Science, 7095. Berlin, Heidelberg: Springer: 143-152.
PUB | DOI
 
2011 | Zeitschriftenaufsatz | PUB-ID: 2408602
Data Warehouses in Bioinformatics: Integration of Molecular Biological Data
Kormeier B, Hippe K, Hofestädt R (2011)
it Information Technology 53(5): 241-249.
PUB | DOI
 
2010 | Konferenzband | PUB-ID: 2376605
Computational Systems Biology: German/Russian Network of Computational Systems Biology
Hofestädt R, Kolchanov N (Eds) (2010)
Medizinische Informatik und Bioinformatik.
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2010 | Zeitschriftenaufsatz | PUB-ID: 2409400
RAMEDIS: a comprehensive information system for variations and corresponding phenotypes of rare metabolic diseases
Töpel T, Scheible D, Trefz F, Hofestädt R (2010)
Human Mutation 31(1): E1081-E1088.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | PUB-ID: 2374757
Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches
Sommer B, Tiys ES, Kormeier B, Hippe K, Janowski SJ, Ivanisenko TV, Bragin AO, Arrigo P, Demenkov PS, Kochetov AV, Ivanisenko VA, et al. (2010)
Journal of Integrative Bioinformatics 7(1): 148.
PUB | DOI | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | PUB-ID: 2408607
Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues.
Lee H-M, Dietz K-J, Hofestädt R (2010)
Journal of Integrative Bioinformatics (Special Issue) 7(3).
PUB | DOI | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | PUB-ID: 2406168
CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases
Kormeier B, Hippe K, Töpel T, Hofestädt R (2010)
Journal of Integrative Bioinformatics 7(1): 142.
PUB | DOI | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | PUB-ID: 1960746
Modeling of cell-cell communication processes with Petri nets using the example of quorum sensing
Janowski SJ, Kormeier B, Töpel T, Hippe K, Hofestädt R, Willassen N, Friesen R, Rubert S, Borck D, Haugen P, Chen M (2010)
In Silico Biology 10(Special Issue: Petri Net Applications in Molecular Biology): 27-48.
PUB
 
2010 | Zeitschriftenaufsatz | PUB-ID: 1945096
Reconstruction of biological networks based on life science data integration
Kormeier B, Hippe K, Arrigo P, Töpel T, Janowski SJ, Hofestädt R (2010)
Journal of Integrative Bioinformatics 7(2).
PUB | DOI | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | PUB-ID: 2383120
DNA-Programming Language of Life
Hofestädt R (2009)
HBSO 13(1): 68-72.
PUB
 
2009 | Konferenzbeitrag | PUB-ID: 2383132
Daten in den Lebenswissenschaften. Vom Paper über Datenbanken zur integrierten Informationsquelle
Hofestädt R, Kuhn K, Müller W, Türker C (2009)
In: Informatik 2009. Fischer S, Maehle E, Reischuk R (Eds); LNI, 154. Bonn: Ges. für Informatik: 33-34.
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2009 | Konferenzband | PUB-ID: 2408644 PUB
 
2009 | Zeitschriftenaufsatz | PUB-ID: 2383105
Bioinformatik
Hofestädt R, Mayr E-W (2009)
Informatik Spektrum 32(4): 285-286.
PUB | DOI
 
2009 | Sammelwerksbeitrag | PUB-ID: 2408628
CARDIOVINEdb: a data warehouse approach for integration of life science in cardiovascular diseases
Kormeier B, Hippe K, Töpel T, Hofestädt R (2009)
In: Im Focus das Leben. 39. Jahrestagung der Gesellschaft für Informatik e.V. (GI), 28.9. bis 2.10.2009, Universität zu Lübeck. Fischer S, Maehle E, Reischuk R (Eds); Bonn: Gesellschaft für Informatik (GI): 704-708.
PUB | Download (ext.)
 
2008 | Herausgeber Sammelwerk | PUB-ID: 2383295
Integrative Bioinformatics. Yearbook 2007
Hofestädt R, Töpel T (Eds) (2008) ; 4.
Aachen: Shaker.
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2008 | Zeitschriftenaufsatz | PUB-ID: 2408654
Alignment of Linear Biochemical Pathways Using Protein Structural Classification
Hariharaputran S, Töpel T, Oberwahrenbrock T, Hofestädt R (2008)
Nature Precedings.
PUB | DOI
 
2008 | Zeitschriftenaufsatz | PUB-ID: 2408666
METAGENE and RAMEDIS: databases for metabolic diseases and patients with inborn errors on metabolism
Trefz F, Scheible D, Götz H, Töpel T, Hofestädt R, Frauendienst-Egger G (2008)
Journal of Inherited Metabolic Disease 31: 289.
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2008 | Zeitschriftenaufsatz | PUB-ID: 1945955
BioDWH: a data warehouse kit for life science data integration
Töpel T, Kormeier B, Klassen A, Hofestädt R (2008)
Journal of Integrative Bioinformatics 5(2).
PUB | DOI | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | PUB-ID: 2378044
Extended Backus-systems for the representation and specification of the genome
Hofestädt R (2007)
Journal of Bioinformatics and Computational Biology 5(02b): 457-466.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Konferenzbeitrag | PUB-ID: 2409265
SignAlign: prediction and alignment of biochemical pathways using protein structural information
Hariharaputran S, Töpel T, Oberwahrenbrock T, Hofestädt R (2007)
In: Proceedings of 5th International Conference on Pathways, Networks, and Systems.
PUB
 
2007 | Herausgeber Sammelwerk | PUB-ID: 2394320
Integrative Bioinformatics. Yearbook 2006
Hofestädt R, Töpel T (Eds) (2007) ; 3.
Aachen: Shaker.
PUB
 
2007 | Konferenzbeitrag | PUB-ID: 2409256
A medical case-based reasoning component for the rare metabolic diseases database RAMEDIS
Töpel T, Neumann J, Hofestädt R (2007)
In: Proceedings. Twentieth IEEE International Symposium on Computer-Based Medical Systems (CBMS 2007). Kokol P (Ed); Los Alamitos, Calif.: IEEE Computer Society: 7-11.
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2007 | Kurzbeitrag Konferenz | PUB-ID: 1632474
Expanded newborn screening: Long-term follow up of 63 patients screened by tandem mass spectrometry
Scheible D, Töpel T, Frauendienst-Egger G, Hofestädt R, Wallner S, Trefz FK (2007)
JOURNAL OF INHERITED METABOLIC DISEASE 30(Suppl. 1): 3.
PUB | WoS
 
2006 | Zeitschriftenaufsatz | PUB-ID: 2394354
RAMEDIS, the rare metabolic diseases database
Töpel T, Hofestädt R, Scheible D, Trefz F (2006)
Applied Bioinformatics 5(2): 115-118.
PUB | DOI | PubMed | Europe PMC
 
2006 | Kurzbeitrag Konferenz | PUB-ID: 1596367
www.ramedis.de: Database for long term follow up of patients with rare metabolic diseases
Trefz FK, Töpel T, Scheible D, Frauendienst-Egger G, Hofestädt R (2006)
JOURNAL OF INHERITED METABOLIC DISEASE 29(Suppl. 1): 84.
PUB | WoS
 
2006 | Zeitschriftenaufsatz | PUB-ID: 1599808
A medical bioinformatics approach for metabolic disorders: Biomedical data prediction, modeling, and systematic analysis
Chen M, Hofestädt R (2006)
JOURNAL OF BIOMEDICAL INFORMATICS 39(2): 147-159.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Kurzbeitrag Konferenz | PUB-ID: 1596361
Expanded newborn screening: Long term follow up of 25 patients with organic acidemias and urea cycle disorders
Trefz FK, Töpel T, Scheible D, Frauendienst-Egger G, Hofestädt R (2006)
JOURNAL OF INHERITED METABOLIC DISEASE 29(Suppl. 1): 84.
PUB | WoS
 
2004 | Zeitschriftenaufsatz | PUB-ID: 1606526
Web-based information retrieval system for the prediction of metabolic pathways
Chen M, Hofestädt R (2004)
IEEE TRANSACTIONS ON NANOBIOSCIENCE 3(3): 192-199.
PUB | DOI | WoS | PubMed | Europe PMC
 

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