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544 Publikationen

2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Gren, T., Ortseifen, V., Wibberg, D., Schneiker-Bekel, S., Bednarz, H., Niehaus, K., Zemke, T., Persicke, M., Pühler, A. & Kalinowski, J. (2016). Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors. Journal of Biotechnology, 232, 79-88. Gehalten auf der 10th CeBiTec Symposium on Bioinformatics for Biotechnology and Biomedicine, Elsevier Science BV. doi:10.1016/j.jbiotec.2016.05.012.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908260
Torres Tejerizo, G.A., Antonio Rogel, M., Ormeno-Orrillo, E., Julia Althabegoiti, M., Fernanda Nilsson, J., Niehaus, K., Schlüter, A., Pühler, A., Florencia Del Papa, M., Lagares, A., Martinez-Romero, E. & Pistorio, M. (2016). Rhizobium favelukesii sp nov., isolated from the root nodules of alfalfa (Medicago sativa L). INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 66, 4451-4457. Microbiology Soc. doi:10.1099/ijsem.0.001373.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905122
Draghi, W.O., Del Papa, M.F., Hellweg, C., Watt, S.A., Watt, T.F., Barsch, A., Lozano, M.J., Lagares, A., J., Salas, M.E., Lopez, J.L., Albicoro, F.J., Nilsson, J.F., Torres Tejerizo, G.A., Luna, M.F., Pistorio, M., Boiardi, J.L., Pühler, A., Weidner, S., Niehaus, K. & Lagares, A. (2016). A consolidated analysis of the physiologic and molecular responses induced under acid stress in the legume-symbiont model-soil bacterium Sinorhizobium meliloti. SCIENTIFIC REPORTS, 6: 29278. Nature Publishing Group.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917142
Wibberg, D., Andersson, L., Rupp, O., Goesmann, A., Pühler, A., Varrelmann, M., Dixelius, C. & Schlüter, A. (2016). Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670. Journal of Biotechnology, 222, 11-12. Elsevier Science BV. doi:10.1016/j.jbiotec.2016.02.001.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691
Martini, M.C., Wibberg, D., Lozano, M., Torres Tejerizo, G., Albicoro, F.J., Jaenicke, S., van Elsas, J.D., Petroni, A., Garcillan-Barcia, M.P., de la Cruz, F., Schlüter, A., Pühler, A., Pistorio, M., Lagares, A. & Del Papa, M.F. (2016). Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. Scientific Reports, 6: 28284. Nature Publishing Group. doi:10.1038/srep28284.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
Maus, I., Cibis, K.G., Bremges, A., Stolze, Y., Wibberg, D., Tomazetto, G., Blom, J., Sczyrba, A., König, H., Pühler, A. & Schlüter, A. (2016). Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment. Journal of Biotechnology, 232, 50-60. Elsevier BV. doi:10.1016/j.jbiotec.2016.05.001.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
Wibberg, D., Bremges, A., Dammann-Kalinowski, T., Maus, I., Igeño, M.I., Vogelsang, R., König, C., Luque-Almagro, V.M., Roldán, M.D., Sczyrba, A., Moreno-Vivián, C., Blasco, R., Pühler, A. & Schlüter, A. (2016). Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing. Journal of Biotechnology, 232, 61-68. Elsevier BV. doi:10.1016/j.jbiotec.2016.04.008.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Liebe, S., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A. & Varrelmann, M. (2016). Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes. FEMS Microbiology Ecology, 92(2): fiw004. Oxford Univ Press. doi:10.1093/femsec/fiw004.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Wolf, T., Gren, T., Thieme, E., Wibberg, D., Zemke, T., Pühler, A. & Kalinowski, J. (2016). Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System. Journal of Biotechnology, 231, 122-128. Elsevier Science Bv. doi:10.1016/j.jbiotec.2016.05.039.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900928
Nesme, J., Achouak, W., Agathos, S., Bailey, M., Baldrian, P., Brunel, D., Frostegard, A., Heulin, T., Jansson, J.K., Jurkevitch, E., Kowalchuk, G.A., Kruus, K.L., Lagares, A., Lapin-Scott, H.M., Le Paslier, D., ic-Mulec, I., Murrell, C., Myrold, D.D., Nalin, R., Nannipieri, P., Neufeld, J.D., O'Gara, F., Parnell, J.J., Pühler, A., Pylro, V., Ramos, J.L., Roesch, L., Schleper, C., Schloter, M., Sczyrba, A., Sessitsch, A., Sjöling, S., Sørensen, J., Sørensen, S.J., Tebbe, C.C., Topp, E., Tsiamis, G., Van Elsas, J.D., Van Keulen, G., Wagner, M., Widmer, F., Zhang, T., Zhang, X., Zhao, L., Zhu, Y.-G., Vogel, T.M. & Simonet, P. (2016). Back to the future of soil metagenomics. Frontiers in Microbiology, 7: 73. doi:10.3389/fmicb.2016.00073.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Wolf, T., Zemke, T., Wehmeier, U.F., Hecker, M., Kalinowski, J., Becher, D. & Pühler, A. (2016). Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters. Journal of Proteomics, 131, 140-148. Elsevier Science BV. doi:10.1016/j.jprot.2015.10.023.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Bontron, S., Sczyrba, A., Nordmann, P., Pühler, A., Poirel, L. & Schlüter, A. (2016). Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene. Antimicrobial Agents and Chemotherapy, 60(5), 3032-3040. American Society for Microbiology. doi:10.1128/AAC.00124-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901808
Alkhateeb, R., Vorhölter, F.-J., Rückert, C., Mentz, A., Wibberg, D., Hublik, G., Niehaus, K. & Pühler, A. (2016). Genome wide transcription start sites analysis of the Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan. J Biotechnol, 225, 18-28. Elsevier Science BV. doi:10.1016/j.jbiotec.2016.03.020.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Maus, I., Koeck, D.E., Cibis, K.G., Hahnke, S., Kim, Y.S., Langer, T., Kreubel, J., Erhard, M., Bremges, A., Off, S., Stolze, Y., Jaenicke, S., Goesmann, A., Sczyrba, A., Scherer, P., König, H., Schwarz, W.H., Zverlov, V.V., Liebl, W., Pühler, A., Schlüter, A. & Klocke, M. (2016). Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels, 9(1): 171. Springer Nature. doi:10.1186/s13068-016-0581-3.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Kröber, M., Verwaaijen, B., Wibberg, D., Winkler, A., Pühler, A. & Schlüter, A. (2016). Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing. Journal of Biotechnology, 231, 212-223. Elsevier Science Bv. doi:10.1016/j.jbiotec.2016.06.013.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905629
Tomazetto, G., Hahnke, S., Koeck, D.E., Wibberg, D., Maus, I., Pühler, A., Klocke, M. & Schlüter, A. (2016). Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor. Journal of Biotechnology, 232, 38-49. Gehalten auf der 10th CeBiTec Symposium on Bioinformatics for Biotechnology and Biomedicine, Elsevier Science Bv. doi:10.1016/j.jbiotec.2015.08.001.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905631
Leßmeier, L., Alkhateeb, R., Schulte, F., Steffens, T., Loka, T.P., Pühler, A., Niehaus, K. & Vorhölter, F.-J. (2016). Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris. Journal of Biotechnology, 232, 89-98. Gehalten auf der 10th CeBiTec Symposium on Bioinformatics for Biotechnology and Biomedicine, Elsevier Science Bv. doi:10.1016/j.jbiotec.2016.04.007.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., Fracowiak, J., Pühler, A. & Schlüter, A. (2016). An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology, 231, 268-279. Elsevier BV. doi:10.1016/j.jbiotec.2016.06.014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Pühler, A., Poirel, L. & Schlüter, A. (2015). Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses. Genome Announcements, 3(4), e00850-15. American Society for Microbiology. doi:10.1128/genomea.00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Nordmann, P., Pühler, A., Poirel, L. & Schlüter, A. (2015). Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1. Genome Announcements, 3(5): e01008-15. American Society for Microbiology. doi:10.1128/genomeA.01008-15.
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