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545 Publikationen

2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements, 3(4). doi:10.1128/genomeA.00680-15
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064 OA
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Nordmann, P., Pühler, A., Poirel, L., et al. (2015). Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1. Genome Announcements, 3(5), e01008-15. doi:10.1128/genomeA.01008-15
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., et al. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology, 211, 20-30. doi:10.1016/j.jbiotec.2015.06.423
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Wibberg, D., Rupp, O., Jelonek, L., Kröber, M., Verwaaijen, B., Blom, J., Winkler, A., et al. (2015). Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology, 203, 19-21. doi:10.1016/j.jbiotec.2015.03.005
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297 OA
Wibberg, D., Rupp, O., Blom, J., Jelonek, L., Kröber, M., Verwaaijen, B., Goesmann, A., et al. (2015). Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One, 10(12), e0144769. doi:10.1371/journal.pone.0144769
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2768627 OA
Eikmeyer, F. G., Heinl, S., Marx, H., Pühler, A., Grabherr, R., & Schlüter, A. (2015). Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing. PLoS ONE, 10(7), e0134149. doi:10.1371/journal.pone.0134149
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906 OA
Bremges, A., Maus, I., Belmann, P., Eikmeyer, F. G., Winkler, A., Albersmeier, A., Pühler, A., et al. (2015). Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant. GigaScience, 4(1), 33. doi:10.1186/s13742-015-0073-6
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382 OA
Stolze, Y., Zakrzewski, M., Maus, I., Eikmeyer, F. G., Jaenicke, S., Rottmann, N., Siebner, C., et al. (2015). Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions. Biotechnology for Biofuels, 8, 14. doi:10.1186/s13068-014-0193-8
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733521
Stoeveken, J., Singh, R., Kolkenbrock, S., Zakrzewski, M., Wibberg, D., Eikmeyer, F. G., Pühler, A., et al. (2015). Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample. Journal of Biotechnology, 201, 60-68. doi:10.1016/j.jbiotec.2014.09.010
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717648
Hahnke, S., Maus, I., Wibberg, D., Geizecler, T., Pühler, A., Klocke, M., & Schlüter, A. (2015). Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor. Journal of Biotechnology, 193, 34-36. doi:10.1016/j.jbiotec.2014.11.010
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Ortseifen, V., Winkler, A., Albersmeier, A., Wendler, S., Pühler, A., Kalinowski, J., & Rückert, C. (2015). Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid. Journal of Biotechnology, 194, 81-83. doi:10.1016/j.jbiotec.2014.11.036
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Walter, F., et al. (2015). Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster. Journal of Proteomics, 125, 1-16. doi:10.1016/j.jprot.2015.04.013
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
Wibberg, D., Alkhateeb, R., Winkler, A., Albersmeier, A., Schatschneider, S., Albaum, S., Niehaus, K., et al. (2015). Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951). Journal of Biotechnology, 204, 45-46. doi:10.1016/j.jbiotec.2015.03.026
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
Maus, I., Cibis, K. G., Wibberg, D., Winkler, A., Stolze, Y., König, H., Pühler, A., et al. (2015). Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant. Journal of Biotechnology, 203, 17-18. doi:10.1016/j.jbiotec.2015.03.006
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2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901302
Verwaaijen, B., Pühler, A., Niehaus, K., & Schlüter, A. (2015). Analysis of the pathogenic interaction of R. solani On L. sativa by means of transcriptomics. Mycoses, 58(Suppl. 3), 49-50.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733509
Maus, I., Wibberg, D., Stantscheff, R., Stolze, Y., Blom, J., Eikmeyer, F. G., Fracowiak, J., et al. (2015). Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants. Journal of Biotechnology, 201, 43-53. doi:10.1016/j.jbiotec.2014.11.020
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679
Vinardell, J. M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., et al. (2015). The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions, 28(7), 811-824. doi:10.1094/mpmi-12-14-0397-fi
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
Koeck, D. E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V. V., Liebl, W., Pühler, A., et al. (2015). Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor. Journal of Biotechnology, 214, 59-60. doi:10.1016/j.jbiotec.2015.07.022
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2778477
Dziewit, L., Czarnecki, J., Prochwicz, E., Wibberg, D., Schlüter, A., Pühler, A., & Bartosik, D. (2015). Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686. Frontiers in Microbiology, 6, 852. doi:10.3389/fmicb.2015.00852
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731076
Dziewit, L., Pyzik, A., Szuplewska, M., Matlakowska, R., Mielnicki, S., Wibberg, D., Schlüter, A., et al. (2015). Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals. Frontiers in Microbiology, 6, 152. doi:10.3389/fmicb.2015.00152
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2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2694187
Brinkrolf, K., Hoffrogge, R., Hackl, M., Tauch, A., Baumann, M., Noll, T., Goesmann, A., et al. (2014). Functional -Omics for Cell Lines and Processes - The -Omics Technologies on the Example of CHO Cells. In H. Hauser & R. Wagner (Eds.), Animal Cell Biotechnology In Biologics Production Berlin, Germany: Walter de Gruyter.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678800 OA
Kröber, M., Wibberg, D., Grosch, R., Eikmeyer, F. G., Verwaaijen, B., Chowdhury, S. P., Hartmann, A., et al. (2014). Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing. Frontiers in Microbiology, 5, 252. doi:10.3389/fmicb.2014.00252
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2684336
Weitze, M. - D., & Pühler, A. (2014). Concept of Law in Biology Synthetic Biology - Towards an Engineering Science. European Review, 22, S102-S112. doi:10.1017/S1062798713000793
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717549
Geizecler, T., Hahnke, S., Maus, I., Wibberg, D., Pühler, A., Schlüter, A., & Klocke, M. (2014). Complete genome sequence of Peptoniphilus sp strain ING2-D1G isolated from a mesophilic lab-scale completely stirred tank reactor utilizing maize silage in co-digestion with pig and cattle manure for biomethanation. Journal of Biotechnology, 192, 59-61. doi:10.1016/j.jbiotec.2014.09.011
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, P., Neshat, A., Kalinowski, J., Klein, A., Rückert, C., Schneiker-Bekel, S., Wendler, S., et al. (2014). Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology, 190, 85-95. doi:10.1016/j.jbiotec.2014.03.013
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
Jakobi, T., Brinkrolf, K., Tauch, A., Noll, T., Stoye, J., Pühler, A., & Goesmann, A. (2014). Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing. Journal of Biotechnology, 190, 64-75. doi:10.1016/j.jbiotec.2014.07.437
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology, 178, 23-31. doi:10.1016/j.jbiotec.2014.02.021
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2701280
Noll, T., Pühler, A., Weisshaar, B., & Wendisch, V. F. (2014). The Genomics Revolution and its Impact on Future Biotechnology. Journal of Biotechnology, 190, 1-1. doi:10.1016/j.jbiotec.2014.10.009
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699819
Schatschneider, S., Huber, C., Neuweger, H., Watt, T., Pühler, A., Eisenreich, W., Wittmann, C., et al. (2014). Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis. Molecular BioSystems, 10(10), 2663-2676. doi:10.1039/c4mb00198b
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., et al. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE, 9(1), e85568. doi:10.1371/journal.pone.0085568
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658490
Dziewit, L., Czarnecki, J., Wibberg, D., Radlinska, M., Mrozek, P., Szymczak, M., Schlüter, A., et al. (2014). Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids. BMC Genomics, 15(1), 124. doi:10.1186/1471-2164-15-124
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Goesmann, A., Grosch, R., Pühler, A., et al. (2014). Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs). Fungal Biology, 118(9-10), 800-813. doi:10.1016/j.funbio.2014.06.007
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694915
Hahnke, S., Wibberg, D., Geizecler, T., Pühler, A., Klocke, M., & Schlüter, A. (2014). Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw. Journal of Biotechnology, 184, 199-200. doi:10.1016/j.jbiotec.2014.05.026
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A. - K., Bunk, B., Schobert, M., et al. (2014). Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements, 2(1). doi:10.1128/genomeA.01174-13
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Fischer, N., Steinkämper, A., Pühler, A., et al. (2014). Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology, 178, 41-42. doi:10.1016/j.jbiotec.2014.03.011
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685861
Torres Tejerizo, G., Pistorio, M., Althabegoiti, M. J., Cervantes, L., Wibberg, D., Schlüter, A., Pühler, A., et al. (2014). Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background. FEMS Microbiology Ecology, 88(3), 565-578. doi:10.1111/1574-6941.12325
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926 OA
Wibberg, D., Tielen, P., Blom, J., Rosin, N., Schobert, M., Tüpker, R., Schatschneider, S., et al. (2014). Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38. Genome announcements, 2(2), e00161-14. doi:10.1128/genomeA.00161-14
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2675608
Wibberg, D., Torres Tejerizo, G., Florencia Del Papa, M., Martini, C., Pühler, A., Lagares, A., Schlüter, A., et al. (2014). Genome sequence of the acid-tolerant strain Rhizobium sp LPU83. Journal of Biotechnology, 176, 40-41. doi:10.1016/j.jbiotec.2014.02.008
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
Maus, I., Stantscheff, R., Wibberg, D., Stolze, Y., Winkler, A., Pühler, A., König, H., et al. (2014). Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT. Journal of Biotechnology, 192, 40-41. doi:10.1016/j.jbiotec.2014.09.018
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558
Koeck, D. E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V. V., Pühler, A., et al. (2014). First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant. Journal of Biotechnology, 192, 154-155. doi:10.1016/j.jbiotec.2014.09.017
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Koeck, D. E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V. V., Liebl, W., et al. (2014). Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant. Journal of Biotechnology, 188, 136-137. doi:10.1016/j.jbiotec.2014.08.024
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710114
Townsend, P. D., Jungwirth, B., Pojer, F., Bußmann, M., Money, V. A., Cole, S. T., Pühler, A., et al. (2014). The Crystal Structures of Apo and cAMP-Bound GlxR from Corynebacterium glutamicum Reveal Structural and Dynamic Changes upon cAMP Binding in CRP/FNR Family Transcription Factors. PloS one, 9(12), 113265. doi:10.1371/journal.pone.0113265
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
Wendler, S., Ortseifen, V., Persicke, M., Klein, A., Neshat, A., Niehaus, K., Schneiker-Bekel, S., et al. (2014). Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110. Journal of Biotechnology, 191, 113-120. doi:10.1016/j.jbiotec.2014.08.019
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676049
Schlüter, A., Nordmann, P., Bonnin, R. A., Millemann, Y., Eikmeyer, F. G., Wibberg, D., Pühler, A., et al. (2014). IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolates. Antimicrobial Agents and Chemotherapy, 58(7), 3768-3773. doi:10.1128/AAC.02695-14
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
Wibberg, D., Luque-Almagro, V. M., Igeño, M. I., Bremges, A., Roldán, M. D., Merchán, F., Sáez, L. P., et al. (2014). Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology, 175, 67-68. doi:10.1016/j.jbiotec.2014.02.004
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969 OA
Mentz, A., Neshat, A., Pfeifer-Sancar, K., Pühler, A., Rückert, C., & Kalinowski, J. (2013). Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032. BMC Genomics, 14(1), 714. doi:10.1186/1471-2164-14-714
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193 OA
Eikmeyer, F. G., Rademacher, A., Hanreich, A., Hennig, M., Jaenicke, S., Maus, I., Wibberg, D., et al. (2013). Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms. Biotechnology for Biofuels, 6(1), 49. doi:10.1186/1754-6834-6-49
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548270
Jungwirth, B., Sala, C., Kohl, T. A., Uplekar, S., Baumbach, J., Cole, S. T., Pühler, A., et al. (2013). High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum. Microbiology, 159(Pt_1), 12-22. doi:10.1099/mic.0.062059-0
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology, 167(2), 142-155. doi:10.1016/j.jbiotec.2012.12.010
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Wibberg, D., Blom, J., Rückert, C., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A., et al. (2013). Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis. Journal of Biotechnology, 168(4), 731-733. doi:10.1016/j.jbiotec.2013.10.015
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