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546 Publikationen

2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A.T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., Weile, J., Goesmann, A.: CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology. 1, 55 (2007).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M.O., Bartels, D., Bekel, T., Beyer, S., Bode, E., Bode, H.B., Bolten, C.J., Choudhuri, J.V., Doss, S., Elnakady, Y.A., Frank, B., Gaigalat, L., Goesmann, A., Groeger, C., Gross, F., Jelsbak, L., Jelsbak, L., Kalinowski, J., Kegler, C., Knauber, T., Konietzny, S., Kopp, M., Krause, L., Krug, D., Linke, B., Mahmud, T., Martinez-Arias, R., McHardy, A.C., Merai, M., Meyer, F., Mormann, S., Munoz-Dorado, J., Perez, J., Pradella, S., Rachid, S., Raddatz, G., Rosenau, F., Rückert, C., Sasse, F., Scharfe, M., Schuster, S.C., Suen, G., Treuner-Lange, A., Velicer, G.J., Vorhölter, F.-J., Weissman, K.J., Welch, R.D., Wenzel, S.C., Whitworth, D.E., Wilhelm, S., Wittmann, C., Bloecker, H., Pühler, A., Mueller, R.: Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology. 25, 1281-1289 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595908
Szczepanowski, R., Krahn, I., Bohn, N., Pühler, A., Schlueter, A.: Novel macrolide resistance module carried by the IncP-1 beta resistance plasmid pRSB111, isolated from a wastewater treatment plant. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 51, 673-678 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595939
Pühler, A., Strack, D.: Molecular basics of mycorrhizal symbioses. PHYTOCHEMISTRY. 68, 6-7 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune, I., Jochmann, N., Brinkrolf, K., Hueser, A.T., Gerstmeir, R., Eikmanns, B.J., Kalinowski, J., Pühler, A., Tauch, A.: The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum. JOURNAL OF BACTERIOLOGY. 189, 2720-2733 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier, N., Chao, T.-C., Daschkey, S., Muesken, M., Kalinowski, J., Pühler, A., Tauch, A.: A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411. PROTEOMICS. 7, 1076-1096 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631103
Rinas, U., Pühler, A.: In memoriam: Wolf-Dieter Deckwer - Merging process engineering and systems biology. JOURNAL OF BIOTECHNOLOGY. 132, 341 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593538
Schlüter, A., Szczepanowski, R., Pühler, A., Top, E.M.: Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. FEMS MICROBIOLOGY REVIEWS. 31, 449-477 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst, D., Larisch, C., Hueser, A.T., Tauch, A., Pühler, A., Kalinowski, J.: The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes. JOURNAL OF BACTERIOLOGY. 189, 4696-4707 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593746
Stiens, M., Schneiker-Bekel, S., Pühler, A., Schlüter, A.: Sequence analysis of the 181-kb accessory plasmid pSmeSM11b, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment. FEMS MICROBIOLOGY LETTERS. 271, 297-309 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595014
Schlüter, A., Szczepanowski, R., Kurz, N., Schneiker-Bekel, S., Krahn, I., Pühler, A.: Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 73, 1952-1960 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596137
Del Papa, M.F., Pistorio, M., Draghi, W.O., Lozano, M.J., Giusti, M.A., Medina, C., van Dillewijn, P., Martinez-Abarca, F., Flores, B.M., Ruiz-Sainz, J.E., Megias, M., Pühler, A., Niehaus, K., Toro, N., Lagares, A.: Identification and characterization of a nodH ortholog from the alfalfa-nodulating Or191-like rhizobia. Molecular Plant - Microbe Interactions. 20, 138-145 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause, L., McHardy, A.C., Nattkemper, T.W., Pühler, A., Stoye, J., Meyer, F.: GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research. 35, 540-549 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A.M., Bekel, T., Dondrup, M., Henckel, K., Goesmann, A., Meyer, F., Wipf, D., Requena, N., Hildebrandt, U., Hampp, R., Nehls, U., Krajinski, F., Franken, P., Pühler, A.: Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry. 68, 19-32 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727 OA
Gaigalat, L., Schlüter, J.-P., Hartmann, M., Mormann, S., Tauch, A., Pühler, A., Kalinowski, J.: The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum. BMC Molecular Biology. 8, 104 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593996
Sewald, N., Pühler, A.: Molecular systems biology. JOURNAL OF BIOTECHNOLOGY. 129, 171-172 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946125
Schlüter, A., Krahn, I., Kollin, F., Bonemann, G., Stiens, M., Szczepanowski, R., Schneiker-Bekel, S., Pühler, A.: IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes. Appl Environ Microbiol. 73, 6345-6350 (2007).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune, I., Becker, A., Paarmann, D., Albersmeier, A., Kalinowski, J., Pühler, A., Tauch, A.: Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression. J Biotechnol. 127, 21-33 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628 OA
Brune, I., Werner, H., Hüser, A.T., Kalinowski, J., Pühler, A., Tauch, A.: The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum. BMC Genomics. 7, : 21 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier, N., Chao, T.C., Kalinowski, J., Pühler, A., Tauch, A.: Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae. PROTEOMICS. 6, 2465-2476 (2006).
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596821
Selbitschka, W., Keller, M., Miethling-Graff, R., Dresing, U., Schwieger, F., Krahn, I., Homann, I., Dammann-Kalinowski, T., Pühler, A., Tebbe, C.C.: Long-term field release of bioluminescent Sinorhizobium meliloti strains to assess the influence of a recA mutation on the strains' survival. MICROBIAL ECOLOGY. 52, 583-595 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597413
Gottschalk, G., Goebel, W., Pühler, A.: Aspects of prokaryotic genome research. JOURNAL OF BIOTECHNOLOGY. 126, 1-2 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598081
Bönemann, G., Stiens, M., Pühler, A., Schlüter, A.: Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 50, 3075-3080 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
Schneiker-Bekel, S., dos Santos, V.A.P.M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T.N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O.V., Kaminski, F., Khachane, A.N., Lang, S., Linke, B., McHardy, A.C., Meyer, F., Nechitaylo, T., Pühler, A., Regenhardt, D., Rupp, O., Sabirova, J.S., Selbitschka, W., Yakimov, M.M., Timmis, K.N., Vorhölter, F.-J., Weidner, S., Kaiser, O., Golyshin, P.N.: Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology. 24, 997-1004 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598803
Grabley, S., Pühler, A.: BioPerspectives - From basic research to industrial production. JOURNAL OF BIOTECHNOLOGY. 124, 1-3 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
Hansmeier, N., Albersmeier, A., Tauch, A., Damberg, T., Ros, R., Anselmetti, D., Pühler, A., Kalinowski, J.: The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032. Microbiology. 152, 923-935 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
Hansmeier, N., Chao, T.C., Pühler, A., Tauch, A., Kalinowski, J.: The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032. PROTEOMICS. 6, 233-250 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599383
Stiens, M., Schneiker-Bekel, S., Keller, M., Kuhn, S., Pühler, A., Schlüter, A.: Sequence analysis of the 144-kilobase accessory plasmid pSmeSM11a, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experimerit. Appl Environ Microbiol. 72, 3662-3672 (2006).
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600185
Gaillard, M., Vallaeys, T., Vorhölter, F.-J., Minoia, M., Werlen, C., Sentchilo, V., Pühler, A., van der Meer, J.R.: The clc element of Pseudomonas sp strain B13, a genomic island with various catabolic properties. JOURNAL OF BACTERIOLOGY. 188, 1999-2013 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598296
Nielsen, J., Pühler, A.: Highlights from ECB12 - Bringing genomes to life. JOURNAL OF BIOTECHNOLOGY. 124, 627-628 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
Tauch, A., Trost, E., Bekel, T., Goesmann, A., Ludewig, U., Pühler, A.: Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica. 4, 4-6 (2006).
PUB
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853 OA
Mormann, S., Lömker, A., Rückert, C., Gaigalat, L., Tauch, A., Pühler, A., Kalinowski, J.: Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway. BMC Genomics. 7, : 205 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
Mahne, M., Tauch, A., Pühler, A., Kalinowski, J.: The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins. FEMS MICROBIOLOGY LETTERS. 259, 226-233 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Boehm, M., Friedrich, F., Hurek, T., Krause, L., Linke, B., McHardy, A.C., Sarkar, A., Schneiker-Bekel, S., Syed, A.A., Thauer, R., Vorhölter, F.-J., Weidner, S., Pühler, A., Reinhold-Hurek, B., Kaiser, O., Goesmann, A.: Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology. 24, 1385-1391 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
Hain, T., Steinweg, C., Kuenne, C.T., Billion, A., Ghai, R., Chatterjee, S.S., Domann, E., Kaerst, U., Goesmann, A., Bekel, T., Bartels, D., Kaiser, O., Meyer, F., Pühler, A., Weisshaar, B., Wehland, J., Liang, C., Dandekar, T., Lampidis, R., Kreft, J., Goebel, W., Chakraborty, T.: Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology. 188, 8299-8302 (2006).
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631957
Krause, L., Diaz, N.N., Bartels, D., Edwards, R.A., Pühler, A., Rohwer, F., Meyer, F., Stoye, J.: Finding novel genes in bacterial communities isolated from the environment. BIOINFORMATICS. 22, e281-e289 (2006).
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2447862
Pühler, A., Becker, A., Buhrmester, J., Chao, T.-C., Rüberg, S., Weidner, S.: What can bacterial genome research teach us about iron uptake in Sinorhizobium meliloti? In: Wang, Y.-P., Lin, M., Tian, Z.-X., Elmerich, C., and Newton, W.E. (eds.) Biological Nitrogen Fixation, Sustainable Agriculture and the Environment: Proceedings of the 14th International Nitrogen Fixation Congress. Current Plant Science and Biotechnology in Agriculture, 41. p. 119-122. Springer (2005).
PUB
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458
Hüser, A.T., Chassagnole, C., Lindley, N.D., Merkamm, M., Guyonvarch, A., Elisakova, V., Patek, M., Kalinowski, J., Brune, I., Pühler, A., Tauch, A.: Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 71, 3255-3268 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
Rey, D.A., Nentwich, S.S., Koch, D.J., Rückert, C., Pühler, A., Tauch, A., Kalinowski, J.: The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032. MOLECULAR MICROBIOLOGY. 56, 871-887 (2005).
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603291
Braun, S.G., Meyer, A., Olst, O., Pühler, A., Niehaus, K.: Characterization of the Xanthomonas campestris pv. campestris lipopolysaccharide substructures essential for elicitation of an oxidative burst in tobacco cells. Molecular Plant - Microbe Interactions. 18, 674-681 (2005).
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., Stoye, J., Meyer, F., Schuster, S.C.: BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics. 21, 853-859 (2005).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604683
Fehlberg, V., Vieweg, M.F., Dohmann, E.M.N., Hohnjec, N., Pühler, A., Perlick, A.M., Küster, H.: The promoter of the leghaemoglobin gene VfLb29: functional analysis and identification of modules necessary for its activation in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots. JOURNAL OF EXPERIMENTAL BOTANY. 56, 799-806 (2005).
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604328
Szczepanowski, R., Braun, S., Riedel, V., Schneiker-Bekel, S., Krahn, I., Pühler, A., Schlüter, A.: The 120 592 bp lncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different anti biotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions. MICROBIOLOGY-SGM. 151, 1095-1111 (2005).
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1864013
Tennstedt, T., Heuer, H., Top, E.M., Szczepanowski, R., Pühler, A., Schlüter, A.: Genomics of resistance plasmids isolated from wastewater treatment plants. Plasmid. 53, 40-41 (2005).
PUB
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602311
Schlüter, A., Heuer, H., Szczepanowski, R., Poler, S.M., Schneiker-Bekel, S., Pühler, A., Top, E.M.: Plasmid pB8 is closely related to the prototype IncP-1 beta plasmid R751 but transfers poorly to Escherichia coli and carries a new transposon encoding a small multidrug resistance efflux protein. PLASMID. 54, 135-148 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Buttner, D., Caldana, C., Gaigalat, L., Goesmann, A., Kay, S., Kirchner, O., Lanz, C., Linke, B., McHardy, A.C., Meyer, F., Mittenhuber, G., Nies, D.H., Niesbach-Klosgen, U., Patschkowski, T., Rückert, C., Rupp, O., Schneiker-Bekel, S., Schuster, S.C., Vorhölter, F.-J., Weber, E., Pühler, A., Bonas, U., Bartels, D., Kaiser, O.: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY. 187, 7254-7266 (2005).
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602933
Frenzel, A., Manthey, K., Perlick, A.M., Meyer, F., Pühler, A., Küster, H., Krajinski, F.: Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific Medicago truncatula lectin genes. Mol Plant-Microbe Interact. 18, 771-782 (2005).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601308
Reiss, G., Brückl, H., Hütten, A., Schotter, J., Brzeska, M., Panhorst, M., Sudfeld, D., Becker, A., Kamp, P.-B., Pühler, A., Wojczykowski, K., Jutzi, P.: Magnetoresistive sensors and magnetic nanoparticles for biotechnology. Journal of Materials Research. 20, 3294-3302 (2005).
PUB | DOI | WoS
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771 OA
Rückert, C., Koch, D.J., Rey, D.A., Albersmeier, A., Mormann, S., Pühler, A., Kalinowski, J.: Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction. BMC Genomics. 6, : 121 (2005).
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602010
Chao, T.-C., Buhrmester, J., Hansmeier, N., Pühler, A., Weidner, S.: Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 71, 5969-5982 (2005).
PUB | DOI | WoS | PubMed | Europe PMC
 

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