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548 Publikationen

2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1633812
Jochmann, Nina, Kurze, Anna-Katharina, Czaja, Lisa F., Brinkrolf, Karina, Brune, Iris, Hueser, Andrea T., Hansmeier, Nicole, Pühler, Alfred, Borovok, Ilya, and Tauch, Andreas. 2009. “Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays”. MICROBIOLOGY 155 (5): 1459-1477.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, Thomas, Henckel, Kolja, Küster, Helge, Meyer, Folker, Mittard-Runte, Virginie, Neuweger, Heiko, Paarmann, Daniel, et al. 2009. “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”. Journal of Biotechnology 140 (1-2): 3-12.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292 OA
Gross, Roy, Guzman, Carlos A., Sebaihia, Mohammed, Martins dos Santos, Vítor A. P., Pieper, Dietmar H., Koebnik, Ralf, Lechner, Melanie, et al. 2008. “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”. BMC Genomics 9 (1): 449.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
Vorhölter, Frank-Jörg, Schneiker-Bekel, Susanne, Goesmann, Alexander, Krause, Lutz, Bekel, Thomas, Kaiser, Olaf, Linke, Burkhard, et al. 2008. “The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis”. Journal of Biotechnology 134 (1-2): 33-45.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078
Brinkrolf, Karina, Ploeger, Svenja, Solle, Sandra, Brune, Iris, Nentwich, Svenia S., Hueser, Andrea T., Kalinowski, Jörn, Pühler, Alfred, and Tauch, Andreas. 2008. “The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences”. MICROBIOLOGY 154 (4): 1068-1081.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585980
Schlueter, Andreas, Krause, Lutz, Szczepanowski, Rafael, Goesmann, Alexander, and Pühler, Alfred. 2008. “Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant”. Journal of Biotechnology 136 (1-2): 65-76.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592318
Meschini, Eitel Peltzer, Blanco, Flavio Antonio, Zanetti, Maria Eugenia, Beker, Maria Pia, Küster, Helge, Pühler, Alfred, and Aguilar, O. Mario. 2008. “Host genes involved in nodulation preference in common bean (Phaseolus vulgaris)-Rhizobium etli symbiosis revealed - by suppressive subtractive hybridization”. MOLECULAR PLANT-MICROBE INTERACTIONS 21 (4): 459-468.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560 OA
Rückert, Christian, Milse, Johanna, Albersmeier, Andreas, Koch, Daniel J., Pühler, Alfred, and Kalinowski, Jörn. 2008. “The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules”. BMC GENOMICS 9 (1): 483.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585914
Pühler, Alfred, and Selbitschka, Werner. 2008. “Genome research in the light of ultrafast sequencing technologies”. JOURNAL OF BIOTECHNOLOGY 136 (1-2): 1-2.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585969
Szczepanowski, Rafael, Bekel, Thomas, Goesmann, Alexander, Krause, Lutz, Kroemeke, Holger, Kaiser, Olaf, Eichler, Wolfgang, Pühler, Alfred, and Schlueter, Andreas. 2008. “Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology”. JOURNAL OF BIOTECHNOLOGY 136 (1-2): 54-64.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592210
Jungwirth, Britta, Emer, Denise, Brune, Iris, Hansmeier, Nicole, Pühler, Alfred, Eikmanns, Bernhard J., and Tauch, Andreas. 2008. “Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR”. FEMS MICROBIOLOGY LETTERS 281 (2): 190-197.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586869
Serrania, Javier, Vorhölter, Frank-Jörg, Niehaus, Karsten, Pühler, Alfred, and Becker, Anke. 2008. “Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data”. Journal of Biotechnology 135 (3): 309-317.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, Lutz, Diaz, Naryttza N., Edwards, Robert A., Gartemann, Karl-Heinz, Krömeke, Holger, Neuweger, Heiko, Pühler, Alfred, et al. 2008. “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”. JOURNAL OF BIOTECHNOLOGY 136 (1-2): 91-101.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586719
Kohl, Thomas, Baumbach, Jan, Jungwirth, Britta, Pühler, Alfred, and Tauch, Andreas. 2008. “The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator”. JOURNAL OF BIOTECHNOLOGY 135 (4): 340-350.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
Stiens, Michael, Becker, Anke, Bekel, Thomas, Gödde, Victoria, Goesmann, Alexander, Niehaus, Karsten, Schneiker-Bekel, Susanne, et al. 2008. “Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11”. Journal of Biotechnology 136 (1-2): 31-37.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
Schlüter, Andreas, Bekel, Thomas, Diaz, Naryttza N., Dondrup, Michael, Eichenlaub, Rudolf, Gartemann, Karl-Heinz, Krahn, Irene, et al. 2008. “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”. Journal of Biotechnology 136 (1-2): 77-90.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch, Andreas, Trost, Eva, Tilker, Alexandra, Ludewig, Ulrike, Schneiker-Bekel, Susanne, Goesmann, Alexander, Arnold, Walter, et al. 2008. “The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing”. Journal of Biotechnology 136 (1-2): 11-21.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345
Gartemann, Karl-Heinz, Abt, Birte, Bekel, Thomas, Burger, Annette, Engemann, Jutta, Fluegel, Monika, Gaigalat, Lars, et al. 2008. “The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity”. JOURNAL OF BACTERIOLOGY 190 (6): 2138-2149.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, Andreas, Schneider, Jessica, Szczepanowski, Rafael, Tilker, Alexandra, Viehöver, Prisca, Gartemann, Karl-Heinz, Arnold, Walter, et al. 2008. “Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids”. Journal of Biotechnology 136 (1-2): 22-30.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631126
Kuhn, Stefanie, Stiens, Michael, Pühler, Alfred, and Schlüter, Andreas. 2008. “Prevalence of pSmeSM11a-like plasmids in indigenous Sinorhizobium meliloti strains isolated in the course of a field release experiment with genetically modified S-meliloti strains”. FEMS MICROBIOLOGY ECOLOGY 63 (1): 118-131.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
Strauch, Eckhard, Hammerl, Jens Andre, Konietzny, Antje, Schneiker-Bekel, Susanne, Arnold, Walter, Goesmann, Alexander, Pühler, Alfred, and Beutin, Lothar. 2008. “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”. Infection and Immunity 76 (12): 5466-5477.
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2914794
Schotter, Jörg, Panhorst, Michael, Brzeska, Monika, Kamp, Paul-Bertram, Becker, Anke, Pühler, Alfred, Reiss, Günter, and Brückl, Hubert. 2007. “Molecular Detection with Magnetic Labels and Magnetoresistive Sensors”. In Nanoscale Devices - Fundamentals and Applications, ed. Rudolf Gross, Anatolie Sidorenko, and Lenar Tagirov, 233:35-46. NATO Science Series. Dordrecht: Springer Netherlands.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
Neuweger, Heiko, Baumbach, Jan, Albaum, Stefan, Bekel, Thomas, Dondrup, Michael, Hüser, Andrea T., Kalinowski, Jörn, et al. 2007. “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”. BMC Systems Biology 1 (1): 55.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, Susanne, Perlova, Olena, Kaiser, Olaf, Gerth, Klaus, Alici, Aysel, Altmeyer, Matthias O., Bartels, Daniela, et al. 2007. “Complete genome sequence of the myxobacterium Sorangium cellulosum”. Nature Biotechnology 25 (11): 1281-1289.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595908
Szczepanowski, Rafael, Krahn, Irene, Bohn, Nadine, Pühler, Alfred, and Schlueter, Andreas. 2007. “Novel macrolide resistance module carried by the IncP-1 beta resistance plasmid pRSB111, isolated from a wastewater treatment plant”. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 51 (2): 673-678.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595939
Pühler, Alfred, and Strack, Dieter. 2007. “Molecular basics of mycorrhizal symbioses”. PHYTOCHEMISTRY 68 (1): 6-7.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune, Iris, Jochmann, Nina, Brinkrolf, Karina, Hueser, Andrea T., Gerstmeir, Robert, Eikmanns, Bernhard J., Kalinowski, Jörn, Pühler, Alfred, and Tauch, Andreas. 2007. “The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum”. JOURNAL OF BACTERIOLOGY 189 (7): 2720-2733.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier, Nicole, Chao, Tzu-Chiao, Daschkey, Svenja, Muesken, Mathias, Kalinowski, Jörn, Pühler, Alfred, and Tauch, Andreas. 2007. “A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411”. PROTEOMICS 7 (7): 1076-1096.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631103
Rinas, U., and Pühler, Alfred. 2007. “In memoriam: Wolf-Dieter Deckwer - Merging process engineering and systems biology”. JOURNAL OF BIOTECHNOLOGY 132 (4): 341.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593538
Schlüter, Andreas, Szczepanowski, Rafael, Pühler, Alfred, and Top, Eva M. 2007. “Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool”. FEMS MICROBIOLOGY REVIEWS 31 (4): 449-477.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst, Diana, Larisch, Christof, Hueser, Andrea T., Tauch, Andreas, Pühler, Alfred, and Kalinowski, Jörn. 2007. “The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes”. JOURNAL OF BACTERIOLOGY 189 (13): 4696-4707.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593746
Stiens, Michael, Schneiker-Bekel, Susanne, Pühler, Alfred, and Schlüter, Andreas. 2007. “Sequence analysis of the 181-kb accessory plasmid pSmeSM11b, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment”. FEMS MICROBIOLOGY LETTERS 271 (2): 297-309.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595014
Schlüter, Andreas, Szczepanowski, Rafael, Kurz, N., Schneiker-Bekel, Susanne, Krahn, Irene, and Pühler, Alfred. 2007. “Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function”. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73 (6): 1952-1960.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596137
Del Papa, M. F., Pistorio, M., Draghi, W. O., Lozano, M. J., Giusti, M. A., Medina, C., van Dillewijn, P., et al. 2007. “Identification and characterization of a nodH ortholog from the alfalfa-nodulating Or191-like rhizobia”. Molecular Plant - Microbe Interactions 20 (2): 138-145.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster, Helge, Becker, Anke, Firnhaber, Christian, Hohnjec, Natalija, Manthey, Katja, Perlick, Andreas M., Bekel, Thomas, et al. 2007. “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”. Phytochemistry 68 (1): 19-32.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause, Lutz, McHardy, Alice C., Nattkemper, Tim Wilhelm, Pühler, Alfred, Stoye, Jens, and Meyer, Folker. 2007. “GISMO - gene identification using a support vector machine for ORF classification”. Nucleic Acids Research 35 (2): 540-549.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727 OA
Gaigalat, Lars, Schlüter, Jan-Philip, Hartmann, Michelle, Mormann, Sascha, Tauch, Andreas, Pühler, Alfred, and Kalinowski, Jörn. 2007. “The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum”. BMC Molecular Biology 8 (1): 104.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593996
Sewald, Norbert, and Pühler, Alfred. 2007. “Molecular systems biology”. JOURNAL OF BIOTECHNOLOGY 129 (2): 171-172.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946125
Schlüter, Andreas, Krahn, Irene, Kollin, Florian, Bonemann, Gabriele, Stiens, Michael, Szczepanowski, Rafael, Schneiker-Bekel, Susanne, and Pühler, Alfred. 2007. “IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes”. Appl Environ Microbiol 73 (20): 6345-6350.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune, Iris, Becker, Anke, Paarmann, Daniel, Albersmeier, Andreas, Kalinowski, Jörn, Pühler, Alfred, and Tauch, Andreas. 2006. “Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression”. J Biotechnol 127 (1): 21-33.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628 OA
Brune, Iris, Werner, Hendrikje, Hüser, Andrea T., Kalinowski, Jörn, Pühler, Alfred, and Tauch, Andreas. 2006. “The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum”. BMC Genomics 7 (1): 21.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier, N., Chao, T. C., Kalinowski, Jörn, Pühler, Alfred, and Tauch, Andreas. 2006. “Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae”. PROTEOMICS 6 (8): 2465-2476.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596821
Selbitschka, Werner, Keller, M., Miethling-Graff, R., Dresing, U., Schwieger, F., Krahn, I., Homann, I., Dammann-Kalinowski, T., Pühler, Alfred, and Tebbe, C. C. 2006. “Long-term field release of bioluminescent Sinorhizobium meliloti strains to assess the influence of a recA mutation on the strains' survival”. MICROBIAL ECOLOGY 52 (3): 583-595.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597413
Gottschalk, G., Goebel, W., and Pühler, Alfred. 2006. “Aspects of prokaryotic genome research”. JOURNAL OF BIOTECHNOLOGY 126 (1): 1-2.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598081
Bönemann, Gabriele, Stiens, Michael, Pühler, Alfred, and Schlüter, Andreas. 2006. “Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant”. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 50 (9): 3075-3080.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
Schneiker-Bekel, Susanne, dos Santos, Vitor A. P. Martins, Bartels, Daniela, Bekel, Thomas, Brecht, Martina, Buhrmester, Jens, Chernikova, Tatyana N., et al. 2006. “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”. Nature Biotechnology 24 (8): 997-1004.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598803
Grabley, S, and Pühler, Alfred. 2006. “BioPerspectives - From basic research to industrial production”. JOURNAL OF BIOTECHNOLOGY 124 (1): 1-3.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
Hansmeier, N, Albersmeier, Andreas, Tauch, Andreas, Damberg, T, Ros, R, Anselmetti, Dario, Pühler, Alfred, and Kalinowski, Jörn. 2006. “The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032”. Microbiology 152 (4): 923-935.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
Hansmeier, N., Chao, T. C., Pühler, Alfred, Tauch, Andreas, and Kalinowski, Jörn. 2006. “The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032”. PROTEOMICS 6 (1): 233-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598296
Nielsen, Jens, and Pühler, Alfred. 2006. “Highlights from ECB12 - Bringing genomes to life”. JOURNAL OF BIOTECHNOLOGY 124 (4): 627-628.
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