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548 Publikationen

2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1633812
N. Jochmann, A. - K. Kurze, L. F. Czaja, K. Brinkrolf, I. Brune, A. T. Hueser, N. Hansmeier, A. Pühler, I. Borovok, and A. Tauch, “Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays”, MICROBIOLOGY, 2009, 155, 1459-1477.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
T. Bekel, K. Henckel, H. Küster, F. Meyer, V. Mittard-Runte, H. Neuweger, D. Paarmann, O. Rupp, M. Zakrzewski, A. Pühler, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, 2009, 140, 3-12.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292 OA
R. Gross, C. A. Guzman, M. Sebaihia, V. A. P. Martins dos Santos, D. H. Pieper, R. Koebnik, M. Lechner, D. Bartels, J. Buhrmester, J. V. Choudhuri, et al., “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”, BMC Genomics, 2008, 9, : 449.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
F. - J. Vorhölter, S. Schneiker-Bekel, A. Goesmann, L. Krause, T. Bekel, O. Kaiser, B. Linke, T. Patschkowski, C. Rückert, J. Schmid, et al., “The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis”, Journal of Biotechnology, 2008, 134, 33-45.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078
K. Brinkrolf, S. Ploeger, S. Solle, I. Brune, S. S. Nentwich, A. T. Hueser, J. Kalinowski, A. Pühler, and A. Tauch, “The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences”, MICROBIOLOGY, 2008, 154, 1068-1081.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585980
A. Schlueter, L. Krause, R. Szczepanowski, A. Goesmann, and A. Pühler, “Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant”, Journal of Biotechnology, 2008, 136, 65-76.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592318
E. P. Meschini, F. A. Blanco, M. E. Zanetti, M. P. Beker, H. Küster, A. Pühler, and O. M. Aguilar, “Host genes involved in nodulation preference in common bean (Phaseolus vulgaris)-Rhizobium etli symbiosis revealed - by suppressive subtractive hybridization”, MOLECULAR PLANT-MICROBE INTERACTIONS, 2008, 21, 459-468.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560 OA
C. Rückert, J. Milse, A. Albersmeier, D. J. Koch, A. Pühler, and J. Kalinowski, “The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules”, BMC GENOMICS, 2008, 9, 483.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585914
A. Pühler, and W. Selbitschka, “Genome research in the light of ultrafast sequencing technologies”, JOURNAL OF BIOTECHNOLOGY, 2008, 136, 1-2.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585969
R. Szczepanowski, T. Bekel, A. Goesmann, L. Krause, H. Kroemeke, O. Kaiser, W. Eichler, A. Pühler, and A. Schlueter, “Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology”, JOURNAL OF BIOTECHNOLOGY, 2008, 136, 54-64.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592210
B. Jungwirth, D. Emer, I. Brune, N. Hansmeier, A. Pühler, B. J. Eikmanns, and A. Tauch, “Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR”, FEMS MICROBIOLOGY LETTERS, 2008, 281, 190-197.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
L. Krause, N. N. Diaz, R. A. Edwards, K. - H. Gartemann, H. Krömeke, H. Neuweger, A. Pühler, K. J. Runte, A. Schlüter, J. Stoye, et al., “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”, JOURNAL OF BIOTECHNOLOGY, 2008, 136, 91-101.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586869
J. Serrania, F. - J. Vorhölter, K. Niehaus, A. Pühler, and A. Becker, “Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data”, Journal of Biotechnology, 2008, 135, 309-317.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
M. Stiens, A. Becker, T. Bekel, V. Gödde, A. Goesmann, K. Niehaus, S. Schneiker-Bekel, W. Selbitschka, S. Weidner, A. Schlüter, et al., “Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11”, Journal of Biotechnology, 2008, 136, 31-37.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
A. Schlüter, T. Bekel, N. N. Diaz, M. Dondrup, R. Eichenlaub, K. - H. Gartemann, I. Krahn, L. Krause, H. Kroemeke, O. Kruse, et al., “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”, Journal of Biotechnology, 2008, 136, 77-90.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586719
T. Kohl, J. Baumbach, B. Jungwirth, A. Pühler, and A. Tauch, “The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator”, JOURNAL OF BIOTECHNOLOGY, 2008, 135, 340-350.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
A. Tauch, E. Trost, A. Tilker, U. Ludewig, S. Schneiker-Bekel, A. Goesmann, W. Arnold, T. Bekel, K. Brinkrolf, I. Brune, et al., “The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing”, Journal of Biotechnology, 2008, 136, 11-21.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345
K. - H. Gartemann, B. Abt, T. Bekel, A. Burger, J. Engemann, M. Fluegel, L. Gaigalat, A. Goesmann, I. Graefen, J. Kalinowski, et al., “The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity”, JOURNAL OF BACTERIOLOGY, 2008, 190, 2138-2149.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
A. Tauch, J. Schneider, R. Szczepanowski, A. Tilker, P. Viehöver, K. - H. Gartemann, W. Arnold, J. Blom, K. Brinkrolf, I. Brune, et al., “Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids”, Journal of Biotechnology, 2008, 136, 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631126
S. Kuhn, M. Stiens, A. Pühler, and A. Schlüter, “Prevalence of pSmeSM11a-like plasmids in indigenous Sinorhizobium meliloti strains isolated in the course of a field release experiment with genetically modified S-meliloti strains”, FEMS MICROBIOLOGY ECOLOGY, 2008, 63, 118-131.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
E. Strauch, J. A. Hammerl, A. Konietzny, S. Schneiker-Bekel, W. Arnold, A. Goesmann, A. Pühler, and L. Beutin, “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”, Infection and Immunity, 2008, 76, 5466-5477.
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2914794
J. Schotter, M. Panhorst, M. Brzeska, P. - B. Kamp, A. Becker, A. Pühler, G. Reiss, and H. Brückl, in Nanoscale Devices - Fundamentals and Applications (Eds.: R. Gross, A. Sidorenko, L. Tagirov), Springer Netherlands, Dordrecht, 2007, p. 35-46.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
H. Neuweger, J. Baumbach, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Kalinowski, S. Oehm, A. Pühler, S. Rahmann, et al., “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”, BMC Systems Biology, 2007, 1, : 55.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
S. Schneiker-Bekel, O. Perlova, O. Kaiser, K. Gerth, A. Alici, M. O. Altmeyer, D. Bartels, T. Bekel, S. Beyer, E. Bode, et al., “Complete genome sequence of the myxobacterium Sorangium cellulosum”, Nature Biotechnology, 2007, 25, 1281-1289.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595908
R. Szczepanowski, I. Krahn, N. Bohn, A. Pühler, and A. Schlueter, “Novel macrolide resistance module carried by the IncP-1 beta resistance plasmid pRSB111, isolated from a wastewater treatment plant”, ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2007, 51, 673-678.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595939
A. Pühler, and D. Strack, “Molecular basics of mycorrhizal symbioses”, PHYTOCHEMISTRY, 2007, 68, 6-7.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
I. Brune, N. Jochmann, K. Brinkrolf, A. T. Hueser, R. Gerstmeir, B. J. Eikmanns, J. Kalinowski, A. Pühler, and A. Tauch, “The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum”, JOURNAL OF BACTERIOLOGY, 2007, 189, 2720-2733.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
N. Hansmeier, T. - C. Chao, S. Daschkey, M. Muesken, J. Kalinowski, A. Pühler, and A. Tauch, “A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411”, PROTEOMICS, 2007, 7, 1076-1096.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631103
U. Rinas, and A. Pühler, “In memoriam: Wolf-Dieter Deckwer - Merging process engineering and systems biology”, JOURNAL OF BIOTECHNOLOGY, 2007, 132, 341.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593538
A. Schlüter, R. Szczepanowski, A. Pühler, and E. M. Top, “Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool”, FEMS MICROBIOLOGY REVIEWS, 2007, 31, 449-477.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
D. Nakunst, C. Larisch, A. T. Hueser, A. Tauch, A. Pühler, and J. Kalinowski, “The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes”, JOURNAL OF BACTERIOLOGY, 2007, 189, 4696-4707.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593746
M. Stiens, S. Schneiker-Bekel, A. Pühler, and A. Schlüter, “Sequence analysis of the 181-kb accessory plasmid pSmeSM11b, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment”, FEMS MICROBIOLOGY LETTERS, 2007, 271, 297-309.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595014
A. Schlüter, R. Szczepanowski, N. Kurz, S. Schneiker-Bekel, I. Krahn, and A. Pühler, “Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73, 1952-1960.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596137
M. F. Del Papa, M. Pistorio, W. O. Draghi, M. J. Lozano, M. A. Giusti, C. Medina, P. van Dillewijn, F. Martinez-Abarca, B. M. Flores, J. E. Ruiz-Sainz, et al., “Identification and characterization of a nodH ortholog from the alfalfa-nodulating Or191-like rhizobia”, Molecular Plant - Microbe Interactions, 2007, 20, 138-145.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
H. Küster, A. Becker, C. Firnhaber, N. Hohnjec, K. Manthey, A. M. Perlick, T. Bekel, M. Dondrup, K. Henckel, A. Goesmann, et al., “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”, Phytochemistry, 2007, 68, 19-32.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
L. Krause, A. C. McHardy, T. W. Nattkemper, A. Pühler, J. Stoye, and F. Meyer, “GISMO - gene identification using a support vector machine for ORF classification”, Nucleic Acids Research, 2007, 35, 540-549.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727 OA
L. Gaigalat, J. - P. Schlüter, M. Hartmann, S. Mormann, A. Tauch, A. Pühler, and J. Kalinowski, “The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum”, BMC Molecular Biology, 2007, 8, : 104.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593996
N. Sewald, and A. Pühler, “Molecular systems biology”, JOURNAL OF BIOTECHNOLOGY, 2007, 129, 171-172.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946125
A. Schlüter, I. Krahn, F. Kollin, G. Bonemann, M. Stiens, R. Szczepanowski, S. Schneiker-Bekel, and A. Pühler, “IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes”, Appl Environ Microbiol, 2007, 73, 6345-6350.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
I. Brune, A. Becker, D. Paarmann, A. Albersmeier, J. Kalinowski, A. Pühler, and A. Tauch, “Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression”, J Biotechnol, 2006, 127, 21-33.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628 OA
I. Brune, H. Werner, A. T. Hüser, J. Kalinowski, A. Pühler, and A. Tauch, “The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum”, BMC Genomics, 2006, 7, : 21.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
N. Hansmeier, T. C. Chao, J. Kalinowski, A. Pühler, and A. Tauch, “Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae”, PROTEOMICS, 2006, 6, 2465-2476.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596821
W. Selbitschka, M. Keller, R. Miethling-Graff, U. Dresing, F. Schwieger, I. Krahn, I. Homann, T. Dammann-Kalinowski, A. Pühler, and C. C. Tebbe, “Long-term field release of bioluminescent Sinorhizobium meliloti strains to assess the influence of a recA mutation on the strains' survival”, MICROBIAL ECOLOGY, 2006, 52, 583-595.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597413
G. Gottschalk, W. Goebel, and A. Pühler, “Aspects of prokaryotic genome research”, JOURNAL OF BIOTECHNOLOGY, 2006, 126, 1-2.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598081
G. Bönemann, M. Stiens, A. Pühler, and A. Schlüter, “Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant”, ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2006, 50, 3075-3080.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
S. Schneiker-Bekel, V. A. P. M. dos Santos, D. Bartels, T. Bekel, M. Brecht, J. Buhrmester, T. N. Chernikova, R. Denaro, M. Ferrer, C. Gertler, et al., “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”, Nature Biotechnology, 2006, 24, 997-1004.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598803
S. Grabley, and A. Pühler, “BioPerspectives - From basic research to industrial production”, JOURNAL OF BIOTECHNOLOGY, 2006, 124, 1-3.
PUB | DOI | WoS
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
N. Hansmeier, A. Albersmeier, A. Tauch, T. Damberg, R. Ros, D. Anselmetti, A. Pühler, and J. Kalinowski, “The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032”, Microbiology, 2006, 152, 923-935.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
N. Hansmeier, T. C. Chao, A. Pühler, A. Tauch, and J. Kalinowski, “The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032”, PROTEOMICS, 2006, 6, 233-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599383
M. Stiens, S. Schneiker-Bekel, M. Keller, S. Kuhn, A. Pühler, and A. Schlüter, “Sequence analysis of the 144-kilobase accessory plasmid pSmeSM11a, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experimerit”, Appl Environ Microbiol, 2006, 72, 3662-3672.
PUB | DOI | WoS | PubMed | Europe PMC
 

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