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548 Publikationen

2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060 OA
Schwientek, Patrick, Szczepanowski, Rafael, Rückert, Christian, Kalinowski, Jörn, Klein, Andreas, Selber, Klaus, Wehmeier, Udo F., Stoye, Jens, and Pühler, Alfred. 2012. “The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110”. BMC Genomics 13 (1): 112.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553286
Jungbauer, Alois, Scheper, Thomas, and Pühler, Alfred. 2012. “Current research and future perspectives of applied biotechnology”. Journal of Biotechnology 162 (4): 355.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849
Weidner, Stefan, Becker, A., Bonilla, I., Jaenicke, Sebastian, Lloret, J., Margaret, I., Pühler, Alfred, et al. 2012. “Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103”. Journal of Bacteriology 194 (6): 1617-1618.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, Martha, Goesmann, Alexander, Jaenicke, Sebastian, Jünemann, Sebastian, Eikmeyer, Felix Gregor, Szczepanowski, Rafael, Al-Soud, Waleed Abu, Sørensen, Søren, Pühler, Alfred, and Schlüter, Andreas. 2012. “Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing”. Journal of Biotechnology 158 (4): 248-258.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2537690 OA
Vorhölter, Frank-Jörg, Wiggerich, Heinrich-Günter, Scheidle, Heiko, Sidhu, Vishaldeep Kaur, Mrozek, Kalina, Küster, Helge, Pühler, Alfred, and Niehaus, Karsten. 2012. “Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases”. BMC Microbiology 12 (1): 239.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279
Eikmeyer, Felix Gregor, Hadiati, Atika, Szczepanowski, Rafael, Wibberg, Daniel, Schneiker-Bekel, Susanne, Rogers, Linda M., Brown, Celeste B., Top, Eva M., Pühler, Alfred, and Schlüter, Andreas. 2012. “The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution”. Plasmid 68 (1): 13-24.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl, Stefan, Wibberg, Daniel, Eikmeyer, Felix Gregor, Szczepanowski, Rafael, Blom, Jochen, Linke, Burkhard, Goesmann, Alexander, et al. 2012. “Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage”. Journal of Biotechnology 161 (2): 153-166.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher, Antje, Zakrzewski, Martha, Schlüter, Andreas, Schonberg, Mandy, Szczepanowski, Rafael, Goesmann, Alexander, Pühler, Alfred, and Klocke, Michael. 2012. “Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing”. FEMS Microbiology Ecology 79 (3): 785-799.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501307
Pietruszka, Joerg, Pühler, Alfred, and Schembecker, Gerhard. 2012. “Research on industrial biotechnology within the CLIB-Graduate Cluster - Part I”. Journal of Biotechnology 159 (3): 121-122.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
Meleady, Paula, Hoffrogge, Raimund, Henry, Michael, Rupp, Oliver, Bort, Juan Hernandez, Clarke, Colin, Brinkrolf, Karina, et al. 2012. “Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics”. Biotechnology and Bioengineering 109 (6): 1386-1394.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl, Matthias, Jadhav, Vaibhav, Jakobi, Tobias, Rupp, Oliver, Brinkrolf, Karina, Goesmann, Alexander, Pühler, Alfred, Noll, Thomas, Borth, Nicole, and Grillari, Johannes. 2012. “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”. Journal of Biotechnology 158 (3): 151-155.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501774
Wendisch, Volker F., and Pühler, Alfred. 2012. “Microbes and industrial biotechnology”. Journal of Biotechnology 158 (4): 157-158.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
Hain, Torsten, Ghai, Rohit, Billion, Andre, Kuenne, Carsten Tobias, Steinweg, Christiane, Izar, Benjamin, Mohamed, Walid, et al. 2012. “Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes”. BMC Genomics 13 (1): 144.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Schneider, Jessica, Andrea, Heiko, Blom, Jochen, Jaenicke, Sebastian, Rückert, Christian, Schorsch, Christoph, Szczepanowski, Rafael, et al. 2012. “Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10”. Eukaryotic Cell 11 (12): 1582-1583.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269 OA
Strobel, Tina, Al-Dilaimi, Arwa, Blom, Jochen, Gessner, Arne, Kalinowski, Jörn, Luzhetska, Marta, Pühler, Alfred, Szczepanowski, Rafael, Bechthold, Andreas, and Rückert, Christian. 2012. “Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae”. BMC Genomics 13 (1): 465.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
Schork, Sabine, Schlüter, Andreas, Blom, Jochen, Schneiker-Bekel, Susanne, Pühler, Alfred, Goesmann, Alexander, Frosch, Matthias, and Schoen, Christoph. 2012. “Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198”. Journal of Bacteriology 194 (18): 5144-5145.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Maus, Irena, Wibberg, Daniel, Stantscheff, R., Eikmeyer, Felix Gregor, Seffner, A., Boelter, J., Szczepanowski, Rafael, et al. 2012. “Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester”. Journal of Bacteriology 194 (19): 5487-5488.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513297
Pauling, Josch, Rottger, Richard, Neuner, Andreas, Salgado, Heladia, Collado-Vides, Julio, Kalaghatgi, Prabhav, Azevedo, Vasco, Tauch, Andreas, Pühler, Alfred, and Baumbach, Jan. 2012. “On the trail of EHEC/EAEC-unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria”. Integrative Biology 4 (7): 728-733.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
Schwientek, Patrick, Szczepanowski, Rafael, Rückert, Christian, Stoye, Jens, and Pühler, Alfred. 2011. “Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology”. Journal of Biotechnology 155 (1): 68-77.
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2011 | Zeitschriftenaufsatz | PUB-ID: 2401477
Mattiasson, Bo, and Pühler, Alfred. 2011. “Towards sustainable biotechnology”. Journal of Biotechnology 152 (4): 113.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
Pothier, Joël F., Vorhölter, Frank-Jörg, Blom, Jochen, Goesmann, Alexander, Pühler, Alfred, Smits, TH, and Duffy, B. 2011. “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”. FEMS Microbiology Letters 323 (1): 52-60.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg, Daniel, Blom, Jochen, Jaenicke, Sebastian, Kollin, Florian, Rupp, Oliver, Scharf, Birgit, Schneiker-Bekel, Susanne, et al. 2011. “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”. Journal of Biotechnology 155 (1): 50-62.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl, Andreas, Schneider, Jessica, Thallinger, Gerhard G., Anderl, Ingund, Wibberg, Daniel, Hajek, Tanja, Jaenicke, Sebastian, et al. 2011. “High-quality genome sequence of Pichia pastoris CBS7435”. Journal of Biotechnology 154 (4): 312-320.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, Jennifer, Hackel, M, Jakobi, Tobias, Rupp, Oliver, Schneider, Jessica, Szczepanowski, Rafael, Bekel, Thomas, et al. 2011. “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”. Journal of Biotechnology 156 (3): 227-235.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
Persicke, Marcus, Plassmeier, Jens, Neuweger, Heiko, Rückert, Christian, Pühler, Alfred, and Kalinowski, Jörn. 2011. “Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites”. Journal of Biotechnology 154 (2-3): 171-178.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
Borriss, Rainer, Chen, Xiao-Hua, Rückert, Christian, Blom, Jochen, Becker, Anke, Baumgarth, Birgit, Fan, Ben, et al. 2011. “Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons”. Int J Syst Evol Microbiol 61 (8): 1786-1801.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326481
Mayer, Lauri, Vendruscolo, Claire Tondo, da Silva, Wladimir Padilha, Vorhölter, Frank-Jörg, Becker, Anke, and Pühler, Alfred. 2011. “Insights into the genome of the xanthan-producing phytopathogen Xanthomonas arboricola pv. pruni 109 by comparative genomic hybridization”. Journal of Biotechnology 155 (1): 40-49.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808
Plassmeier, Jens, Persicke, Marcus, Pühler, Alfred, Sterthoff, Charlott, Rückert, Christian, and Kalinowski, Jörn. 2011. “Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicum”. Journal of Biotechnology 159 (1-2): 1-11.
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker, Jennifer, Timmermann, Christina, Jakobi, Tobias, Rupp, Oliver, Szczepanowski, Rafael, Hackl, Matthias, Goesmann, Alexander, et al. 2011. “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 5 (Suppl. 8): P6.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404874
Schatschneider, Sarah, Vorhölter, Frank-Jörg, Rückert, Christian, Becker, Anke, Eisenreich, Wolfgang, Pühler, Alfred, and Niehaus, Karsten. 2011. “Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling”. Molecular Genetics and Genomics 286 (3-4): 247-259.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, Sebastian, Zakrzewski, Martha, Jünemann, Sebastian, Pühler, Alfred, Goesmann, Alexander, and Schlüter, Andreas. 2011. “Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods”. In Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, ed. Frans J. de Bruijn, 403-414. Hoboken, NJ, USA: Wiley-Blackwell.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317680
Zhou, Lian, Vorhölter, Frank-Jörg, He, Yong-Qiang, Jiang, Bo-Le, Tang, Ji-Liang, Xu, Yuquan, Pühler, Alfred, and He, Ya-Wen. 2011. “Gene discovery by genome-wide CDS re-prediction and microarray-based transcriptional analysis in phytopathogen Xanthomonas campestris”. BMC Genomics 12 (1): 359.
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2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
Schneiker-Bekel, Susanne, Wibberg, Daniel, Bekel, Thomas, Blom, Jochen, Linke, Burkhard, Neuweger, Heiko, Stiens, Michael, et al. In Press. “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”. Journal of Biotechnology 155 (1): 20-33.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, Sebastian, Ander, Christina, Bekel, Thomas, Bisdorf, Regina, Dröge, Marcus, Gartemann, Karl-Heinz, Jünemann, Sebastian, et al. 2011. “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”. PLoS ONE 6 (1): e14519.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, Matthias, Jakobi, Tobias, Blom, Jochen, Doppmeier, Daniel, Brinkrolf, Karina, Szczepanowski, Rafael, Bernhart, Stephan H, et al. 2011. “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”. Journal of Biotechnology 153 (1-2): 62-75.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968039
Torres Tejerizo, Gonzalo, Florencia Del Papa, Maria, Eugenia Soria-Diaz, M., Draghi, Walter, Lozano, Mauricio, de los Angeles Giusti, Maria, Manyani, Hamid, et al. 2011. “The Nodulation of Alfalfa by the Acid-Tolerant Rhizobium sp. Strain LPU83 Does Not Require Sulfated Forms of Lipochitooligosaccharide Nodulation Signals”. Journal of Bacteriology 193 (1): 30-39.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275 OA
Trost, Eva, Götker, Susanne, Schneider, Jessica, Schneiker-Bekel, Susanne, Szczepanowski, Rafael, Tilker, Alexandra, Viehöver, Prisca, et al. 2010. “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”. BMC Genomics 11 (1): 91.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400
Kalinowski, Jörn, Rückert, Christian, Szczepanowski, Rafael, and Pühler, Alfred. 2010. “Advanced Genomics and Transcriptomics of Industrial Microorganisms”. Chemie Ingenieur Technik 82 (9): 1518-1519.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1903875 OA
de Lucena, Daniella Karine, Pühler, Alfred, and Weidner, Stefan. 2010. “The role of sigma factor RpoH1 in the pH stress response of Sinorhizobium meliloti”. BMC Microbiology 10 (1): 256.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
Steinweg, Christiane, Kuenne, Carsten T., Billion, Andre, Mraheil, Mobarak A., Domann, Eugen, Ghai, Rohit, Barbuddhe, Sukhadeo B., et al. 2010. “Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria”. Journal of Bacteriology 192 (5): 1473-1474.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
Gölzhäuser, Armin, Nattkemper, Tim Wilhelm, Niehaus, Karsten, Pühler, Alfred, and Sauer, Markus. 2010. “BioImaging: Contributions from biology, physics and informatics”. Journal of Biotechnology 149 (4): 227-228.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635309 OA
Hellweg, Christoph, Pühler, Alfred, and Weidner, Stefan. 2009. “The time course of the transcriptomic response of Sinorhizobium meliloti 1021 following a shift to acidic pH”. BMC MICROBIOLOGY 9 (1): 37.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
Blom, Jochen, Albaum, Stefan, Doppmeier, Daniel, Pühler, Alfred, Vorhölter, Frank-Jörg, Zakrzewski, Martha, and Goesmann, Alexander. 2009. “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”. BMC Bioinformatics 10 (1): 154.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635951
Nentwich, Svenja S., Brinkrolf, Karina, Gaigalat, Lars, Hueser, Andrea T., Rey, Daniel A., Mohrbach, Tobias, Marin, Kay, Pühler, Alfred, Tauch, Andreas, and Kalinowski, Jörn. 2009. “Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032”. MICROBIOLOGY 155 (1): 150-164.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
Strittmatter, Axel W., Liesegang, Heiko, Rabus, Ralf, Decker, Iwona, Amann, Judith, Andres, Soenke, Henne, Anke, et al. 2009. “Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide”. ENVIRONMENTAL MICROBIOLOGY 11 (5): 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634443
Pühler, Alfred, and Selbitschka, Werner. 2009. “Functional genome research on bacteria relevant for agriculture, environment and biotechnology”. JOURNAL OF BIOTECHNOLOGY 140 (1-2): 1-2.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
Becker, Anke, Barnett, Melanie J., Capela, Delphine, Dondrup, Michael, Kamp, Paul-Bertram, Krol, Elizaveta, Linke, Burkhard, et al. 2009. “A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data”. JOURNAL OF BIOTECHNOLOGY 140 (1-2): 45-50.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
Dondrup, Michael, Albaum, Stefan, Griebel, Thasso, Henckel, Kolja, Jünemann, Sebastian, Kahlke, Tim, Kleindt, Christiane Katja, et al. 2009. “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”. BMC Bioinformatics 10 (1): 50.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591546
Szczepanowski, Rafael, Linke, Burkhard, Krahn, Irene, Gartemann, Karl-Heinz, Guetzkow, Tim, Eichler, Wolfgang, Pühler, Alfred, and Schlueter, Andreas. 2009. “Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics”. MICROBIOLOGY 155 (7): 2306-2319.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591844
Kroeber, Magdalena, Bekel, Thomas, Diaz, Naryttza N., Goesmann, Alexander, Jaenicke, Sebastian, Krause, Lutz, Miller, Dimitri, et al. 2009. “Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing”. JOURNAL OF BIOTECHNOLOGY 142 (1): 38-49.
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