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544 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935899
López, J. L., Lozano, M. J., Lagares, A., Fabre, M. L., Draghi, W. O., Del Papa, M. F., Pistorio, M., Becker, A., Wibberg, D., Schlüter, A., et al. (2019). Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry. mBio 10:e00505-19.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223
Belmann, P., Fischer, B., Krüger, J., Procházka, M., Rasche, H., Prinz, M., Hanussek, M., Lang, M., Bartusch, F., Gläßle, B., et al. (2019). de.NBI Cloud federation through ELIXIR AAI. F1000Research 8:842.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839
Nelkner, J., Tejerizo, G. T., Hassa, J., Lin, T. W., Witte, J., Verwaaijen, B., Winkler, A., Bunk, B., Spröer, C., Overmann, J., et al. (2019). Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics. Genes 10:601.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923
Nelkner, J., Henke, C., Lin, T. W., Pätzold, W., Hassa, J., Jaenicke, S., Grosch, R., Pühler, A., Sczyrba, A., and Schlüter, A. (2019). Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes. Genes 10:424.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439
Schaffert, L., März, C., Burkhardt, L., Droste, J., Brandt, D., Busche, T., Rosen, W., Schneiker-Bekel, S., Persicke, M., Pühler, A., et al. (2019). Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110. Microbial Cell Factories 18:114.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934570
Castellani, L. G., Nilsson, J. F., Wibberg, D., Schlüter, A., Pühler, A., Brom, S., Pistorio, M., and Tejerizo, G. T. (2019). Insight into the structure, function and conjugative transfer of pLPU83a, an accessory plasmid of Rhizobium favelukesii LPU83. Plasmid.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556
Verwaaijen, B., Wibberg, D., Winkler, A., Zrenner, R., Bednarz, H., Niehaus, K., Grosch, R., Pühler, A., and Schlüter, A. (2019). A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani. Scientific Reports 9:7221.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920160
Arnold, W., Grotjohann, N., Pühler, A., Röllke, K., and Selbitschka, W. (2018). Die CeBiT ec Schülerakademie „Synthetische Biologie/Biotechnologie “– Begabtenförderung in einem zukunftsträchtigen Forschungsfeld. ABB-Information. Jahresheft 2017.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Stolze, Y., Bremges, A., Maus, I., Pühler, A., Sczyrba, A., and Schlüter, A. (2018). Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology 11, 667-679.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920169
Salto, I. P., Torres Tejerizo, G., Wibberg, D., Pühler, A., Schlüter, A., and Pistorio, M. (2018). Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats. Scientific Reports 8:7783.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920170
Hassa, J., Maus, I., Off, S., Pühler, A., Scherer, P., Klocke, M., and Schlüter, A. (2018). Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants. Applied Microbiology and Biotechnology 102, 5045-5063.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920168
Tomazetto, G., Hahnke, S., Wibberg, D., Pühler, A., Klocke, M., and Schlüter, A. (2018). Proteiniphilum saccharofermentans str. M3/6 T isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructions. Biotechnology Reports 18:e00254.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930510
Alkhateeb, R., Vorhölter, F. - J., Steffens, T., Rückert, C., Ortseifen, V., Hublik, G., Niehaus, K., and Pühler, A. (2018). Comparative transcription profiling of two fermentation cultures of Xanthomonas campestris pv. campestris B100 sampled in the growth and in the stationary phase. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102, 6613-6625.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
Maus, I., Rumming, M., Bergmann, I., Heeg, K., Pohl, M., Nettmann, E., Jaenicke, S., Blom, J., Pühler, A., Schlüter, A., et al. (2018). Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors. Biotechnology for Biofuels 11:167.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920173
Wibberg, D., Salto, I. P., Eikmeyer, F. G., Maus, I., Winkler, A., Nordmann, P., Pühler, A., Poirel, L., and Schlüter, A. (2018). Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11. Antimicrobial Agents and Chemotherapy 62:e00212-18.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
Verwaaijen, B., Wibberg, D., Nelkner, J., Gordin, M., Rupp, O., Winkler, A., Bremges, A., Blom, J., Grosch, R., Pühler, A., et al. (2018). Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome. JOURNAL OF BIOTECHNOLOGY 267, 12-18.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
Torres Tejerizo, G. A., Wibberg, D., Winkler, A., Ormeño-Orrillo, E., Martínez-Romero, E., Niehaus, K., Pühler, A., Kalinowski, J., Lagares, A., Schlüter, A., et al. (2017). Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T. Genome Announcements 5, e01513-16.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114
Verwaaijen, B., Wibberg, D., Kröber, M., Winkler, A., Zrenner, R., Bednarz, H., Niehaus, K., Grosch, R., Pühler, A., and Schlüter, A. (2017). The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.). PLOS ONE 12:e0177278.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116
Wolf, T., Droste, J., Gren, T., Ortseifen, V., Schneiker-Bekel, S., Zemke, T., Pühler, A., and Kalinowski, J. (2017). The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110. BMC Genomics 18:562.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516
Maus, I., Bremges, A., Stolze, Y., Hahnke, S., Cibis, K. G., Koeck, D. E., Kim, Y. S., Kreubel, J., Hassa, J., Wibberg, D., et al. (2017). Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. Biotechnology for Biofuels 10:264.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910369
Maus, I., Kim, Y. S., Wibberg, D., Stolze, Y., Off, S., Antonczyk, S., Pühler, A., Scherer, P., and Schlüter, A. (2017). Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis. Journal of Microbiology and Biotechnology 27, 321-334.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528
Wolf, T., Schneiker-Bekel, S., Neshat, A., Ortseifen, V., Wibberg, D., Zemke, T., Pühler, A., and Kalinowski, J. (2017). Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis. JOURNAL OF BIOTECHNOLOGY 251, 112-123.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911997
Omar Draghi, W., Florencia Del Papa, M., Barsch, A., Albicoro, F. J., Lozano, M. J., Pühler, A., Niehaus, K., and Lagares, A. (2017). A metabolomic approach to characterize the acid-tolerance response in Sinorhizobium meliloti. METABOLOMICS 13:71.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916470
Tomazetto, G., Hahnke, S., Langer, T., Wibberg, D., Blom, J., Maus, I., Pühler, A., Klocke, M., and Schlüter, A. (2017). The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor. Journal of Biotechnology 257, 178-186.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373
Bartholomäus, A., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A., and Varrelmann, M. (2017). Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales. Archives of Virology 162, 555-559.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916406
Lasek, R., Dziewit, L., Ciok, A., Decewicz, P., Romaniuk, K., Jedrys, Z., Wibberg, D., Schlüter, A., Pühler, A., and Bartosik, D. (2017). Genome content, metabolic pathways and biotechnological potential of the psychrophilic Arctic bacterium Psychrobacter sp DAB_AL43B, a source and a host of novel Psychrobacter-specific vectors. Journal of Biotechnology 263, 64-74.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916435
Czarnecki, J., Dziewit, L., Puzyna, M., Prochwicz, E., Tudek, A., Wibberg, D., Schlüter, A., Pühler, A., and Bartosik, D. (2017). Lifestyle-determining extrachromosomal replicon pAMV1 and its contribution to the carbon metabolism of the methylotrophic bacterium Paracoccus aminovorans JCM 7685. Environmental Microbiology 19, 4536-4550.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538
Ortseifen, V., Kalinowski, J., Pühler, A., and Rückert, C. (2017). The complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) carrying gene clusters for the biosynthesis of tetracenomycin C, 5`-hydroxy streptomycin, and acarbose. J Biotechnol 262, 84-88.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916490
Wibberg, D., Genzel, F., Verwaaijen, B., Blom, J., Rupp, O., Goesmann, A., Zrenner, R., Grosch, R., Pühler, A., and Schlüter, A. (2017). Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3. Archives of Microbiology 199, 1065-1068.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777
Torres Tejerizo, G. A., Kim, Y. S., Maus, I., Wibberg, D., Winkler, A., Off, S., Pühler, A., Scherer, P., and Schlüter, A. (2017). Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste. Journal of Biotechnology 247, 1-5.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462
Alkhateeb, R., Rückert, C., Rupp, O., Pucker, B., Hublik, G., Wibberg, D., Niehaus, K., Pühler, A., and Vorhölter, F. - J. (2017). Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data. Journal of Biotechnology 253, 55-61.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970
Maus, I., Wibberg, D., Winkler, A., Pühler, A., Schnürer, A., and Schlüter, A. (2016). Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor. Genome Announcements 4:e00568-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676
Jaenicke, S., Bunk, B., Wibberg, D., Spröer, C., Hersemann, L., Blom, J., Winkler, A., Schatschneider, S., Albaum, S., Kölliker, R., et al. (2016). Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements 4:e01334-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978
Koeck, D. E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V. V., Liebl, W., Pühler, A., Schwarz, W. H., and Schlüter, A. (2016). Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor. Genome Announcements 4, e00609-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993
Koeck, D. E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V. V., Liebl, W., Pühler, A., Schwarz, W. H., and Schlüter, A. (2016). Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor. Genome Announcements 4, e00687-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431
Bartholomaeus, A., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A., and Varrelmann, M. (2016). Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV. PLOS ONE 11:e0165965.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Stolze, Y., Bremges, A., Rumming, M., Henke, C., Maus, I., Pühler, A., Sczyrba, A., and Schlüter, A. (2016). Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants. Biotechnology for Biofuels 9:156.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903660
Steffens, T., Vorhölter, F. - J., Giampa, M., Hublik, G., Pühler, A., and Niehaus, K. (2016). The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100. BMC Microbiology 16:93.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917144
Wibberg, D., Andersson, L., Tzelepis, G., Rupp, O., Blom, J., Jelonek, L., Pühler, A., Fogelqvist, J., Varrelmann, M., Schlüter, A., et al. (2016). Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes. BMC Genomics 17:245.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
Koeck, D. E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V. V., Liebl, W., Pühler, A., Schwarz, W. H., and Schlüter, A. (2016). Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")". Journal of Biotechnology 237, 35.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Gren, T., Ortseifen, V., Wibberg, D., Schneiker-Bekel, S., Bednarz, H., Niehaus, K., Zemke, T., Persicke, M., Pühler, A., and Kalinowski, J. (2016). Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors. Journal of Biotechnology 232, 79-88.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908260
Torres Tejerizo, G. A., Antonio Rogel, M., Ormeno-Orrillo, E., Julia Althabegoiti, M., Fernanda Nilsson, J., Niehaus, K., Schlüter, A., Pühler, A., Florencia Del Papa, M., Lagares, A., et al. (2016). Rhizobium favelukesii sp nov., isolated from the root nodules of alfalfa (Medicago sativa L). INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 66, 4451-4457.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905122
Draghi, W. O., Del Papa, M. F., Hellweg, C., Watt, S. A., Watt, T. F., Barsch, A., Lozano, M. J., Lagares, A., J., Salas, M. E., Lopez, J. L., et al. (2016). A consolidated analysis of the physiologic and molecular responses induced under acid stress in the legume-symbiont model-soil bacterium Sinorhizobium meliloti. SCIENTIFIC REPORTS 6:29278.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917142
Wibberg, D., Andersson, L., Rupp, O., Goesmann, A., Pühler, A., Varrelmann, M., Dixelius, C., and Schlüter, A. (2016). Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670. Journal of Biotechnology 222, 11-12.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691
Martini, M. C., Wibberg, D., Lozano, M., Torres Tejerizo, G., Albicoro, F. J., Jaenicke, S., van Elsas, J. D., Petroni, A., Garcillan-Barcia, M. P., de la Cruz, F., et al. (2016). Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. Scientific Reports 6:28284.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
Maus, I., Cibis, K. G., Bremges, A., Stolze, Y., Wibberg, D., Tomazetto, G., Blom, J., Sczyrba, A., König, H., Pühler, A., et al. (2016). Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment. Journal of Biotechnology 232, 50-60.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
Wibberg, D., Bremges, A., Dammann-Kalinowski, T., Maus, I., Igeño, M. I., Vogelsang, R., König, C., Luque-Almagro, V. M., Roldán, M. D., Sczyrba, A., et al. (2016). Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing. Journal of Biotechnology 232, 61-68.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Liebe, S., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A., and Varrelmann, M. (2016). Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes. FEMS Microbiology Ecology 92:fiw004.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Wolf, T., Gren, T., Thieme, E., Wibberg, D., Zemke, T., Pühler, A., and Kalinowski, J. (2016). Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System. Journal of Biotechnology 231, 122-128.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900928
Nesme, J., Achouak, W., Agathos, S., Bailey, M., Baldrian, P., Brunel, D., Frostegard, A., Heulin, T., Jansson, J. K., Jurkevitch, E., et al. (2016). Back to the future of soil metagenomics. Frontiers in Microbiology 7:73.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Wolf, T., Zemke, T., Wehmeier, U. F., Hecker, M., et al. (2016). Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters. Journal of Proteomics 131, 140-148.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Bontron, S., Sczyrba, A., Nordmann, P., Pühler, A., Poirel, L., and Schlüter, A. (2016). Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene. Antimicrobial Agents and Chemotherapy 60, 3032-3040.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901808
Alkhateeb, R., Vorhölter, F. - J., Rückert, C., Mentz, A., Wibberg, D., Hublik, G., Niehaus, K., and Pühler, A. (2016). Genome wide transcription start sites analysis of the Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan. J Biotechnol 225, 18-28.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Maus, I., Koeck, D. E., Cibis, K. G., Hahnke, S., Kim, Y. S., Langer, T., Kreubel, J., Erhard, M., Bremges, A., Off, S., et al. (2016). Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels 9:171.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Kröber, M., Verwaaijen, B., Wibberg, D., Winkler, A., Pühler, A., and Schlüter, A. (2016). Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing. Journal of Biotechnology 231, 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905629
Tomazetto, G., Hahnke, S., Koeck, D. E., Wibberg, D., Maus, I., Pühler, A., Klocke, M., and Schlüter, A. (2016). Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor. Journal of Biotechnology 232, 38-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905631
Leßmeier, L., Alkhateeb, R., Schulte, F., Steffens, T., Loka, T. P., Pühler, A., Niehaus, K., and Vorhölter, F. - J. (2016). Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris. Journal of Biotechnology 232, 89-98.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., Fracowiak, J., Pühler, A., and Schlüter, A. (2016). An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology 231, 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Pühler, A., Poirel, L., and Schlüter, A. (2015). Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses. Genome Announcements 3, e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Nordmann, P., Pühler, A., Poirel, L., and Schlüter, A. (2015). Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1. Genome Announcements 3:e01008-15.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., Albersmeier, A., Albaum, S., Goesmann, A., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements 3.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., Pühler, A., Jaeger, K. - E., and Ernst, J. F. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology 211, 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Wibberg, D., Rupp, O., Jelonek, L., Kröber, M., Verwaaijen, B., Blom, J., Winkler, A., Goesmann, A., Grosch, R., Pühler, A., et al. (2015). Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology 203, 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297
Wibberg, D., Rupp, O., Blom, J., Jelonek, L., Kröber, M., Verwaaijen, B., Goesmann, A., Albaum, S., Grosch, R., Pühler, A., et al. (2015). Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One 10:e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2768627
Eikmeyer, F. G., Heinl, S., Marx, H., Pühler, A., Grabherr, R., and Schlüter, A. (2015). Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing. PLoS ONE 10:e0134149.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
Bremges, A., Maus, I., Belmann, P., Eikmeyer, F. G., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A., and Sczyrba, A. (2015). Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant. GigaScience 4:33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382
Stolze, Y., Zakrzewski, M., Maus, I., Eikmeyer, F. G., Jaenicke, S., Rottmann, N., Siebner, C., Pühler, A., and Schlüter, A. (2015). Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions. Biotechnology for Biofuels 8:14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733521
Stoeveken, J., Singh, R., Kolkenbrock, S., Zakrzewski, M., Wibberg, D., Eikmeyer, F. G., Pühler, A., Schlüter, A., and Moerschbacher, B. M. (2015). Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample. Journal of Biotechnology 201, 60-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717648
Hahnke, S., Maus, I., Wibberg, D., Geizecler, T., Pühler, A., Klocke, M., and Schlüter, A. (2015). Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor. Journal of Biotechnology 193, 34-36.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Ortseifen, V., Winkler, A., Albersmeier, A., Wendler, S., Pühler, A., Kalinowski, J., and Rückert, C. (2015). Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid. Journal of Biotechnology 194, 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Walter, F., Wolf, T., Zemke, T., Wehmeier, U. F., et al. (2015). Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster. Journal of Proteomics 125, 1-16.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
Wibberg, D., Alkhateeb, R., Winkler, A., Albersmeier, A., Schatschneider, S., Albaum, S., Niehaus, K., Hublik, G., Pühler, A., and Vorhölter, F. - J. (2015). Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951). Journal of Biotechnology 204, 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
Maus, I., Cibis, K. G., Wibberg, D., Winkler, A., Stolze, Y., König, H., Pühler, A., and Schlüter, A. (2015). Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant. Journal of Biotechnology 203, 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901302
Verwaaijen, B., Pühler, A., Niehaus, K., and Schlüter, A. (2015). Analysis of the pathogenic interaction of R. solani On L. sativa by means of transcriptomics. Mycoses 58, 49-50.
PUB | WoS
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733509
Maus, I., Wibberg, D., Stantscheff, R., Stolze, Y., Blom, J., Eikmeyer, F. G., Fracowiak, J., König, H., Pühler, A., and Schlüter, A. (2015). Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants. Journal of Biotechnology 201, 43-53.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679
Vinardell, J. M., Acosta-Jurado, S., Göttfert, M., Zehner, S., Becker, A., Baena-Ropero, I., Blom, J., Crespo-Rivas, J. C., Goesmann, A., Jaenicke, S., et al. (2015). The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean. Molecular Plant-Microbe Interactions 28, 811-824.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
Koeck, D. E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V. V., Liebl, W., Pühler, A., Schwarz, W. H., and Schlüter, A. (2015). Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor. Journal of Biotechnology 214, 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2778477
Dziewit, L., Czarnecki, J., Prochwicz, E., Wibberg, D., Schlüter, A., Pühler, A., and Bartosik, D. (2015). Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686. Frontiers in Microbiology 6:852.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731076
Dziewit, L., Pyzik, A., Szuplewska, M., Matlakowska, R., Mielnicki, S., Wibberg, D., Schlüter, A., Pühler, A., and Bartosik, D. (2015). Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals. Frontiers in Microbiology 6:152.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2694187
Brinkrolf, K., Hoffrogge, R., Hackl, M., Tauch, A., Baumann, M., Noll, T., Goesmann, A., Pühler, A., and Borth, N. (2014). “Functional -Omics for Cell Lines and Processes - The -Omics Technologies on the Example of CHO Cells” in Animal Cell Biotechnology In Biologics Production, Hauser, H., and Wagner, R. eds. (Berlin, Germany: Walter de Gruyter).
PUB
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678800
Kröber, M., Wibberg, D., Grosch, R., Eikmeyer, F. G., Verwaaijen, B., Chowdhury, S. P., Hartmann, A., Pühler, A., and Schlüter, A. (2014). Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing. Frontiers in Microbiology 5:252.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2684336
Weitze, M. - D., and Pühler, A. (2014). Concept of Law in Biology Synthetic Biology - Towards an Engineering Science. European Review 22, S102-S112.
PUB | DOI | WoS
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717549
Geizecler, T., Hahnke, S., Maus, I., Wibberg, D., Pühler, A., Schlüter, A., and Klocke, M. (2014). Complete genome sequence of Peptoniphilus sp strain ING2-D1G isolated from a mesophilic lab-scale completely stirred tank reactor utilizing maize silage in co-digestion with pig and cattle manure for biomethanation. Journal of Biotechnology 192, 59-61.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, P., Neshat, A., Kalinowski, J., Klein, A., Rückert, C., Schneiker-Bekel, S., Wendler, S., Stoye, J., and Pühler, A. (2014). Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology 190, 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
Jakobi, T., Brinkrolf, K., Tauch, A., Noll, T., Stoye, J., Pühler, A., and Goesmann, A. (2014). Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing. Journal of Biotechnology 190, 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., Tauch, A., and Noll, T. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology 178, 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2701280
Noll, T., Pühler, A., Weisshaar, B., and Wendisch, V. F. (2014). The Genomics Revolution and its Impact on Future Biotechnology. Journal of Biotechnology 190, 1-1.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658490
Dziewit, L., Czarnecki, J., Wibberg, D., Radlinska, M., Mrozek, P., Szymczak, M., Schlüter, A., Pühler, A., and Bartosik, D. (2014). Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids. BMC Genomics 15:124.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., and Goesmann, A. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE 9, e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699819
Schatschneider, S., Huber, C., Neuweger, H., Watt, T., Pühler, A., Eisenreich, W., Wittmann, C., Niehaus, K., and Vorhölter, F. - J. (2014). Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis. Molecular BioSystems 10, 2663-2676.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A. - K., Bunk, B., Schobert, M., Tüpker, R., Schatschneider, S., Rückert, C., et al. (2014). Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements 2.
PUB | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694915
Hahnke, S., Wibberg, D., Geizecler, T., Pühler, A., Klocke, M., and Schlüter, A. (2014). Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw. Journal of Biotechnology 184, 199-200.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Goesmann, A., Grosch, R., Pühler, A., and Schlüter, A. (2014). Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs). Fungal Biology 118, 800-813.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Fischer, N., Steinkämper, A., Pühler, A., Biener, R., Schwartz, D., and Kalinowski, J. (2014). Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology 178, 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685861
Torres Tejerizo, G., Pistorio, M., Althabegoiti, M. J., Cervantes, L., Wibberg, D., Schlüter, A., Pühler, A., Lagares, A., Romero, D., and Brom, S. (2014). Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background. FEMS Microbiology Ecology 88, 565-578.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926
Wibberg, D., Tielen, P., Blom, J., Rosin, N., Schobert, M., Tüpker, R., Schatschneider, S., Spilker, D., Albersmeier, A., Goesmann, A., et al. (2014). Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38. Genome announcements 2:e00161-14.
PUB | PDF | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2675608
Wibberg, D., Torres Tejerizo, G., Florencia Del Papa, M., Martini, C., Pühler, A., Lagares, A., Schlüter, A., and Pistorio, M. (2014). Genome sequence of the acid-tolerant strain Rhizobium sp LPU83. Journal of Biotechnology 176, 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
Maus, I., Stantscheff, R., Wibberg, D., Stolze, Y., Winkler, A., Pühler, A., König, H., and Schlüter, A. (2014). Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT. Journal of Biotechnology 192, 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558
Koeck, D. E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V. V., Pühler, A., Schwarz, W. H., Liebl, W., and Schlüter, A. (2014). First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant. Journal of Biotechnology 192, 154-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Koeck, D. E., Wibberg, D., Maus, I., Winkler, A., Albersmeier, A., Zverlov, V. V., Liebl, W., Pühler, A., Schwarz, W. H., and Schlüter, A. (2014). Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant. Journal of Biotechnology 188, 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
 

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