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544 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935899
J. L. López, M. J. Lozano, A. Lagares, M. L. Fabre, W. O. Draghi, M. F. Del Papa, M. Pistorio, A. Becker, D. Wibberg, A. Schlüter, et al., “Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry”, mBio, 2019, 10, : e00505-19.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223
P. Belmann, B. Fischer, J. Krüger, M. Procházka, H. Rasche, M. Prinz, M. Hanussek, M. Lang, F. Bartusch, B. Gläßle, et al., “de.NBI Cloud federation through ELIXIR AAI”, F1000Research, 2019, 8, : 842.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839
J. Nelkner, G. T. Tejerizo, J. Hassa, T. W. Lin, J. Witte, B. Verwaaijen, A. Winkler, B. Bunk, C. Spröer, J. Overmann, et al., “Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics”, Genes, 2019, 10, : 601.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923
J. Nelkner, C. Henke, T. W. Lin, W. Pätzold, J. Hassa, S. Jaenicke, R. Grosch, A. Pühler, A. Sczyrba, and A. Schlüter, “Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes”, Genes, 2019, 10, : 424.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439
L. Schaffert, C. März, L. Burkhardt, J. Droste, D. Brandt, T. Busche, W. Rosen, S. Schneiker-Bekel, M. Persicke, A. Pühler, et al., “Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110”, Microbial Cell Factories, 2019, 18, : 114.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934570
L. G. Castellani, J. F. Nilsson, D. Wibberg, A. Schlüter, A. Pühler, S. Brom, M. Pistorio, and G. T. Tejerizo, “Insight into the structure, function and conjugative transfer of pLPU83a, an accessory plasmid of Rhizobium favelukesii LPU83”, Plasmid, 2019.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556
B. Verwaaijen, D. Wibberg, A. Winkler, R. Zrenner, H. Bednarz, K. Niehaus, R. Grosch, A. Pühler, and A. Schlüter, “A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani”, Scientific Reports, 2019, 9, : 7221.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920160
W. Arnold, N. Grotjohann, A. Pühler, K. Röllke, and W. Selbitschka, “Die CeBiT ec Schülerakademie „Synthetische Biologie/Biotechnologie “– Begabtenförderung in einem zukunftsträchtigen Forschungsfeld”, ABB-Information. Jahresheft, 2018, 2017.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Y. Stolze, A. Bremges, I. Maus, A. Pühler, A. Sczyrba, and A. Schlüter, “Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants”, Microbial Biotechnology, 2018, 11, 667-679.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920169
I. P. Salto, G. Torres Tejerizo, D. Wibberg, A. Pühler, A. Schlüter, and M. Pistorio, “Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats”, Scientific Reports, 2018, 8, : 7783.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920170
J. Hassa, I. Maus, S. Off, A. Pühler, P. Scherer, M. Klocke, and A. Schlüter, “Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants”, Applied Microbiology and Biotechnology, 2018, 102, 5045-5063.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920168
G. Tomazetto, S. Hahnke, D. Wibberg, A. Pühler, M. Klocke, and A. Schlüter, “Proteiniphilum saccharofermentans str. M3/6 T isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructions”, Biotechnology Reports, 2018, 18, : e00254.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930510
R. Alkhateeb, F. - J. Vorhölter, T. Steffens, C. Rückert, V. Ortseifen, G. Hublik, K. Niehaus, and A. Pühler, “Comparative transcription profiling of two fermentation cultures of Xanthomonas campestris pv. campestris B100 sampled in the growth and in the stationary phase”, APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2018, 102, 6613-6625.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
I. Maus, M. Rumming, I. Bergmann, K. Heeg, M. Pohl, E. Nettmann, S. Jaenicke, J. Blom, A. Pühler, A. Schlüter, et al., “Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors”, Biotechnology for Biofuels, 2018, 11, : 167.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920173
D. Wibberg, I. P. Salto, F. G. Eikmeyer, I. Maus, A. Winkler, P. Nordmann, A. Pühler, L. Poirel, and A. Schlüter, “Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11”, Antimicrobial Agents and Chemotherapy, 2018, 62, : e00212-18.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
B. Verwaaijen, D. Wibberg, J. Nelkner, M. Gordin, O. Rupp, A. Winkler, A. Bremges, J. Blom, R. Grosch, A. Pühler, et al., “Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome”, JOURNAL OF BIOTECHNOLOGY, 2018, 267, 12-18.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
G. A. Torres Tejerizo, D. Wibberg, A. Winkler, E. Ormeño-Orrillo, E. Martínez-Romero, K. Niehaus, A. Pühler, J. Kalinowski, A. Lagares, A. Schlüter, et al., “Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T”, Genome Announcements, 2017, 5, e01513-16.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114
B. Verwaaijen, D. Wibberg, M. Kröber, A. Winkler, R. Zrenner, H. Bednarz, K. Niehaus, R. Grosch, A. Pühler, and A. Schlüter, “The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)”, PLOS ONE, 2017, 12, : e0177278.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116
T. Wolf, J. Droste, T. Gren, V. Ortseifen, S. Schneiker-Bekel, T. Zemke, A. Pühler, and J. Kalinowski, “The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110”, BMC Genomics, 2017, 18, : 562.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516
I. Maus, A. Bremges, Y. Stolze, S. Hahnke, K. G. Cibis, D. E. Koeck, Y. S. Kim, J. Kreubel, J. Hassa, D. Wibberg, et al., “Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes”, Biotechnology for Biofuels, 2017, 10, : 264.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910369
I. Maus, Y. S. Kim, D. Wibberg, Y. Stolze, S. Off, S. Antonczyk, A. Pühler, P. Scherer, and A. Schlüter, “Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis”, Journal of Microbiology and Biotechnology, 2017, 27, 321-334.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528
T. Wolf, S. Schneiker-Bekel, A. Neshat, V. Ortseifen, D. Wibberg, T. Zemke, A. Pühler, and J. Kalinowski, “Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis”, JOURNAL OF BIOTECHNOLOGY, 2017, 251, 112-123.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911997
W. Omar Draghi, M. Florencia Del Papa, A. Barsch, F. J. Albicoro, M. J. Lozano, A. Pühler, K. Niehaus, and A. Lagares, “A metabolomic approach to characterize the acid-tolerance response in Sinorhizobium meliloti”, METABOLOMICS, 2017, 13, : 71.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916470
G. Tomazetto, S. Hahnke, T. Langer, D. Wibberg, J. Blom, I. Maus, A. Pühler, M. Klocke, and A. Schlüter, “The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor”, Journal of Biotechnology, 2017, 257, 178-186.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373
A. Bartholomäus, D. Wibberg, A. Winkler, A. Pühler, A. Schlüter, and M. Varrelmann, “Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales”, Archives of Virology, 2017, 162, 555-559.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916406
R. Lasek, L. Dziewit, A. Ciok, P. Decewicz, K. Romaniuk, Z. Jedrys, D. Wibberg, A. Schlüter, A. Pühler, and D. Bartosik, “Genome content, metabolic pathways and biotechnological potential of the psychrophilic Arctic bacterium Psychrobacter sp DAB_AL43B, a source and a host of novel Psychrobacter-specific vectors”, Journal of Biotechnology, 2017, 263, 64-74.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916435
J. Czarnecki, L. Dziewit, M. Puzyna, E. Prochwicz, A. Tudek, D. Wibberg, A. Schlüter, A. Pühler, and D. Bartosik, “Lifestyle-determining extrachromosomal replicon pAMV1 and its contribution to the carbon metabolism of the methylotrophic bacterium Paracoccus aminovorans JCM 7685”, Environmental Microbiology, 2017, 19, 4536-4550.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538
V. Ortseifen, J. Kalinowski, A. Pühler, and C. Rückert, “The complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) carrying gene clusters for the biosynthesis of tetracenomycin C, 5`-hydroxy streptomycin, and acarbose.”, J Biotechnol, 2017, 262, 84-88.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916490
D. Wibberg, F. Genzel, B. Verwaaijen, J. Blom, O. Rupp, A. Goesmann, R. Zrenner, R. Grosch, A. Pühler, and A. Schlüter, “Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3”, Archives of Microbiology, 2017, 199, 1065-1068.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777
G. A. Torres Tejerizo, Y. S. Kim, I. Maus, D. Wibberg, A. Winkler, S. Off, A. Pühler, P. Scherer, and A. Schlüter, “Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste”, Journal of Biotechnology, 2017, 247, 1-5.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462
R. Alkhateeb, C. Rückert, O. Rupp, B. Pucker, G. Hublik, D. Wibberg, K. Niehaus, A. Pühler, and F. - J. Vorhölter, “Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data”, Journal of Biotechnology, 2017, 253, 55-61.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970
I. Maus, D. Wibberg, A. Winkler, A. Pühler, A. Schnürer, and A. Schlüter, “Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor”, Genome Announcements, 2016, 4, : e00568-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676
S. Jaenicke, B. Bunk, D. Wibberg, C. Spröer, L. Hersemann, J. Blom, A. Winkler, S. Schatschneider, S. Albaum, R. Kölliker, et al., “Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)”, Genome Announcements, 2016, 4, : e01334-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978
D. E. Koeck, I. Maus, D. Wibberg, A. Winkler, V. V. Zverlov, W. Liebl, A. Pühler, W. H. Schwarz, and A. Schlüter, “Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor”, Genome Announcements, 2016, 4, e00609-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993
D. E. Koeck, I. Maus, D. Wibberg, A. Winkler, V. V. Zverlov, W. Liebl, A. Pühler, W. H. Schwarz, and A. Schlüter, “Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor”, Genome Announcements, 2016, 4, e00687-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431
A. Bartholomaeus, D. Wibberg, A. Winkler, A. Pühler, A. Schlüter, and M. Varrelmann, “Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV”, PLOS ONE, 2016, 11, : e0165965.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Y. Stolze, A. Bremges, M. Rumming, C. Henke, I. Maus, A. Pühler, A. Sczyrba, and A. Schlüter, “Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants”, Biotechnology for Biofuels, 2016, 9, : 156.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903660
T. Steffens, F. - J. Vorhölter, M. Giampa, G. Hublik, A. Pühler, and K. Niehaus, “The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100”, BMC Microbiology, 2016, 16, : 93.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917144
D. Wibberg, L. Andersson, G. Tzelepis, O. Rupp, J. Blom, L. Jelonek, A. Pühler, J. Fogelqvist, M. Varrelmann, A. Schlüter, et al., “Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes”, BMC Genomics, 2016, 17, : 245.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
D. E. Koeck, D. Wibberg, I. Maus, A. Winkler, A. Albersmeier, V. V. Zverlov, W. Liebl, A. Pühler, W. H. Schwarz, and A. Schlüter, “Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"”, Journal of Biotechnology, 2016, 237, 35.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
T. Gren, V. Ortseifen, D. Wibberg, S. Schneiker-Bekel, H. Bednarz, K. Niehaus, T. Zemke, M. Persicke, A. Pühler, and J. Kalinowski, “Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors”, Journal of Biotechnology, 2016, 232, 79-88.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908260
G. A. Torres Tejerizo, M. Antonio Rogel, E. Ormeno-Orrillo, M. Julia Althabegoiti, J. Fernanda Nilsson, K. Niehaus, A. Schlüter, A. Pühler, M. Florencia Del Papa, A. Lagares, et al., “Rhizobium favelukesii sp nov., isolated from the root nodules of alfalfa (Medicago sativa L)”, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66, 4451-4457.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905122
W. O. Draghi, M. F. Del Papa, C. Hellweg, S. A. Watt, T. F. Watt, A. Barsch, M. J. Lozano, J. Lagares, A., M. E. Salas, J. L. Lopez, et al., “A consolidated analysis of the physiologic and molecular responses induced under acid stress in the legume-symbiont model-soil bacterium Sinorhizobium meliloti”, SCIENTIFIC REPORTS, 2016, 6, : 29278.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917142
D. Wibberg, L. Andersson, O. Rupp, A. Goesmann, A. Pühler, M. Varrelmann, C. Dixelius, and A. Schlüter, “Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670”, Journal of Biotechnology, 2016, 222, 11-12.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691
M. C. Martini, D. Wibberg, M. Lozano, G. Torres Tejerizo, F. J. Albicoro, S. Jaenicke, J. D. van Elsas, A. Petroni, M. P. Garcillan-Barcia, F. de la Cruz, et al., “Genomics of high molecular weight plasmids isolated from an on-farm biopurification system”, Scientific Reports, 2016, 6, : 28284.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
I. Maus, K. G. Cibis, A. Bremges, Y. Stolze, D. Wibberg, G. Tomazetto, J. Blom, A. Sczyrba, H. König, A. Pühler, et al., “Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment”, Journal of Biotechnology, 2016, 232, 50-60.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
D. Wibberg, A. Bremges, T. Dammann-Kalinowski, I. Maus, M. I. Igeño, R. Vogelsang, C. König, V. M. Luque-Almagro, M. D. Roldán, A. Sczyrba, et al., “Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing”, Journal of Biotechnology, 2016, 232, 61-68.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
S. Liebe, D. Wibberg, A. Winkler, A. Pühler, A. Schlüter, and M. Varrelmann, “Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes”, FEMS Microbiology Ecology, 2016, 92, : fiw004.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
T. Wolf, T. Gren, E. Thieme, D. Wibberg, T. Zemke, A. Pühler, and J. Kalinowski, “Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System”, Journal of Biotechnology, 2016, 231, 122-128.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
S. Wendler, A. Otto, V. Ortseifen, F. Bonn, A. Neshat, S. Schneiker-Bekel, T. Wolf, T. Zemke, U. F. Wehmeier, M. Hecker, et al., “Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters”, Journal of Proteomics, 2016, 131, 140-148.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900928
J. Nesme, W. Achouak, S. Agathos, M. Bailey, P. Baldrian, D. Brunel, A. Frostegard, T. Heulin, J. K. Jansson, E. Jurkevitch, et al., “Back to the future of soil metagenomics”, Frontiers in Microbiology, 2016, 7, : 73.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
T. Krahn, D. Wibberg, I. Maus, A. Winkler, S. Bontron, A. Sczyrba, P. Nordmann, A. Pühler, L. Poirel, and A. Schlüter, “Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.”, Antimicrobial Agents and Chemotherapy, 2016, 60, 3032-3040.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901808
R. Alkhateeb, F. - J. Vorhölter, C. Rückert, A. Mentz, D. Wibberg, G. Hublik, K. Niehaus, and A. Pühler, “Genome wide transcription start sites analysis of the Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan.”, J Biotechnol, 2016, 225, 18-28.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
I. Maus, D. E. Koeck, K. G. Cibis, S. Hahnke, Y. S. Kim, T. Langer, J. Kreubel, M. Erhard, A. Bremges, S. Off, et al., “Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates”, Biotechnology for Biofuels, 2016, 9, : 171.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
M. Kröber, B. Verwaaijen, D. Wibberg, A. Winkler, A. Pühler, and A. Schlüter, “Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing”, Journal of Biotechnology, 2016, 231, 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905629
G. Tomazetto, S. Hahnke, D. E. Koeck, D. Wibberg, I. Maus, A. Pühler, M. Klocke, and A. Schlüter, “Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor”, Journal of Biotechnology, 2016, 232, 38-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905631
L. Leßmeier, R. Alkhateeb, F. Schulte, T. Steffens, T. P. Loka, A. Pühler, K. Niehaus, and F. - J. Vorhölter, “Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris”, Journal of Biotechnology, 2016, 232, 89-98.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
V. Ortseifen, Y. Stolze, I. Maus, A. Sczyrba, A. Bremges, S. Albaum, S. Jaenicke, J. Fracowiak, A. Pühler, and A. Schlüter, “An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant”, Journal of Biotechnology, 2016, 231, 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
T. Krahn, D. Wibberg, I. Maus, A. Winkler, A. Pühler, L. Poirel, and A. Schlüter, “Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses”, Genome Announcements, 2015, 3, e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064
T. Krahn, D. Wibberg, I. Maus, A. Winkler, P. Nordmann, A. Pühler, L. Poirel, and A. Schlüter, “Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1”, Genome Announcements, 2015, 3, : e01008-15.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
M. Arnold, D. Wibberg, J. Blom, S. Schatschneider, A. Winkler, Y. Kutter, C. Rückert, A. Albersmeier, S. Albaum, A. Goesmann, et al., “Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum”, Genome announcements, 2015, 3.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
O. Rupp, K. Brinkrolf, C. Buerth, M. Kunigo, J. Schneider, S. Jaenicke, A. Goesmann, A. Pühler, K. - E. Jaeger, and J. F. Ernst, “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”, Journal of Biotechnology, 2015, 211, 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
D. Wibberg, O. Rupp, L. Jelonek, M. Kröber, B. Verwaaijen, J. Blom, A. Winkler, A. Goesmann, R. Grosch, A. Pühler, et al., “Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system”, Journal of Biotechnology, 2015, 203, 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297
D. Wibberg, O. Rupp, J. Blom, L. Jelonek, M. Kröber, B. Verwaaijen, A. Goesmann, S. Albaum, R. Grosch, A. Pühler, et al., “Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates”, Plos One, 2015, 10, : e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2768627
F. G. Eikmeyer, S. Heinl, H. Marx, A. Pühler, R. Grabherr, and A. Schlüter, “Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing”, PLoS ONE, 2015, 10, : e0134149.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
A. Bremges, I. Maus, P. Belmann, F. G. Eikmeyer, A. Winkler, A. Albersmeier, A. Pühler, A. Schlüter, and A. Sczyrba, “Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant”, GigaScience, 2015, 4, : 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382
Y. Stolze, M. Zakrzewski, I. Maus, F. G. Eikmeyer, S. Jaenicke, N. Rottmann, C. Siebner, A. Pühler, and A. Schlüter, “Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions”, Biotechnology for Biofuels, 2015, 8, : 14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733521
J. Stoeveken, R. Singh, S. Kolkenbrock, M. Zakrzewski, D. Wibberg, F. G. Eikmeyer, A. Pühler, A. Schlüter, and B. M. Moerschbacher, “Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample”, Journal of Biotechnology, 2015, 201, 60-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717648
S. Hahnke, I. Maus, D. Wibberg, T. Geizecler, A. Pühler, M. Klocke, and A. Schlüter, “Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor”, Journal of Biotechnology, 2015, 193, 34-36.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
V. Ortseifen, A. Winkler, A. Albersmeier, S. Wendler, A. Pühler, J. Kalinowski, and C. Rückert, “Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid”, Journal of Biotechnology, 2015, 194, 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
S. Wendler, A. Otto, V. Ortseifen, F. Bonn, A. Neshat, S. Schneiker-Bekel, F. Walter, T. Wolf, T. Zemke, U. F. Wehmeier, et al., “Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster”, Journal of Proteomics, 2015, 125, 1-16.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
D. Wibberg, R. Alkhateeb, A. Winkler, A. Albersmeier, S. Schatschneider, S. Albaum, K. Niehaus, G. Hublik, A. Pühler, and F. - J. Vorhölter, “Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)”, Journal of Biotechnology, 2015, 204, 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
I. Maus, K. G. Cibis, D. Wibberg, A. Winkler, Y. Stolze, H. König, A. Pühler, and A. Schlüter, “Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant”, Journal of Biotechnology, 2015, 203, 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901302
B. Verwaaijen, A. Pühler, K. Niehaus, and A. Schlüter, “Analysis of the pathogenic interaction of R. solani On L. sativa by means of transcriptomics”, Mycoses, 2015, 58, 49-50.
PUB | WoS
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733509
I. Maus, D. Wibberg, R. Stantscheff, Y. Stolze, J. Blom, F. G. Eikmeyer, J. Fracowiak, H. König, A. Pühler, and A. Schlüter, “Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants”, Journal of Biotechnology, 2015, 201, 43-53.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679
J. M. Vinardell, S. Acosta-Jurado, M. Göttfert, S. Zehner, A. Becker, I. Baena-Ropero, J. Blom, J. C. Crespo-Rivas, A. Goesmann, S. Jaenicke, et al., “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”, Molecular Plant-Microbe Interactions, 2015, 28, 811-824.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
D. E. Koeck, I. Maus, D. Wibberg, A. Winkler, V. V. Zverlov, W. Liebl, A. Pühler, W. H. Schwarz, and A. Schlüter, “Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor”, Journal of Biotechnology, 2015, 214, 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2778477
L. Dziewit, J. Czarnecki, E. Prochwicz, D. Wibberg, A. Schlüter, A. Pühler, and D. Bartosik, “Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686”, Frontiers in Microbiology, 2015, 6, : 852.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731076
L. Dziewit, A. Pyzik, M. Szuplewska, R. Matlakowska, S. Mielnicki, D. Wibberg, A. Schlüter, A. Pühler, and D. Bartosik, “Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals”, Frontiers in Microbiology, 2015, 6, : 152.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2694187
K. Brinkrolf, R. Hoffrogge, M. Hackl, A. Tauch, M. Baumann, T. Noll, A. Goesmann, A. Pühler, and N. Borth, in Animal Cell Biotechnology In Biologics Production (Eds.: H. Hauser, R. Wagner), Walter De Gruyter, Berlin, Germany, 2014.
PUB
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678800
M. Kröber, D. Wibberg, R. Grosch, F. G. Eikmeyer, B. Verwaaijen, S. P. Chowdhury, A. Hartmann, A. Pühler, and A. Schlüter, “Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing”, Frontiers in Microbiology, 2014, 5, : 252.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2684336
M. - D. Weitze, and A. Pühler, “Concept of Law in Biology Synthetic Biology - Towards an Engineering Science”, European Review, 2014, 22, S102-S112.
PUB | DOI | WoS
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717549
T. Geizecler, S. Hahnke, I. Maus, D. Wibberg, A. Pühler, A. Schlüter, and M. Klocke, “Complete genome sequence of Peptoniphilus sp strain ING2-D1G isolated from a mesophilic lab-scale completely stirred tank reactor utilizing maize silage in co-digestion with pig and cattle manure for biomethanation”, Journal of Biotechnology, 2014, 192, 59-61.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
P. Schwientek, A. Neshat, J. Kalinowski, A. Klein, C. Rückert, S. Schneiker-Bekel, S. Wendler, J. Stoye, and A. Pühler, “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”, Journal of Biotechnology, 2014, 190, 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
T. Jakobi, K. Brinkrolf, A. Tauch, T. Noll, J. Stoye, A. Pühler, and A. Goesmann, “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”, Journal of Biotechnology, 2014, 190, 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
J. Becker, C. Timmermann, O. Rupp, S. Albaum, K. Brinkrolf, A. Goesmann, A. Pühler, A. Tauch, and T. Noll, “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”, Journal of biotechnology, 2014, 178, 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2701280
T. Noll, A. Pühler, B. Weisshaar, and V. F. Wendisch, “The Genomics Revolution and its Impact on Future Biotechnology”, Journal of Biotechnology, 2014, 190, 1-1.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658490
L. Dziewit, J. Czarnecki, D. Wibberg, M. Radlinska, P. Mrozek, M. Szymczak, A. Schlüter, A. Pühler, and D. Bartosik, “Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids”, BMC Genomics, 2014, 15, : 124.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
O. Rupp, J. Becker, K. Brinkrolf, C. Timmermann, N. Borth, A. Pühler, T. Noll, and A. Goesmann, “Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines”, PLoS ONE, 2014, 9, e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699819
S. Schatschneider, C. Huber, H. Neuweger, T. Watt, A. Pühler, W. Eisenreich, C. Wittmann, K. Niehaus, and F. - J. Vorhölter, “Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis”, Molecular BioSystems, 2014, 10, 2663-2676.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
P. Tielen, D. Wibberg, J. Blom, N. Rosin, A. - K. Meyer, B. Bunk, M. Schobert, R. Tüpker, S. Schatschneider, C. Rückert, et al., “Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection”, Genome announcements, 2014, 2.
PUB | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694915
S. Hahnke, D. Wibberg, T. Geizecler, A. Pühler, M. Klocke, and A. Schlüter, “Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw”, Journal of Biotechnology, 2014, 184, 199-200.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, A. Goesmann, R. Grosch, A. Pühler, and A. Schlüter, “Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)”, Fungal Biology, 2014, 118, 800-813.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, N. Fischer, A. Steinkämper, A. Pühler, R. Biener, D. Schwartz, and J. Kalinowski, “Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin”, Journal of biotechnology, 2014, 178, 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685861
G. Torres Tejerizo, M. Pistorio, M. J. Althabegoiti, L. Cervantes, D. Wibberg, A. Schlüter, A. Pühler, A. Lagares, D. Romero, and S. Brom, “Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background”, FEMS Microbiology Ecology, 2014, 88, 565-578.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926
D. Wibberg, P. Tielen, J. Blom, N. Rosin, M. Schobert, R. Tüpker, S. Schatschneider, D. Spilker, A. Albersmeier, A. Goesmann, et al., “Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38”, Genome announcements, 2014, 2, : e00161-14.
PUB | PDF | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2675608
D. Wibberg, G. Torres Tejerizo, M. Florencia Del Papa, C. Martini, A. Pühler, A. Lagares, A. Schlüter, and M. Pistorio, “Genome sequence of the acid-tolerant strain Rhizobium sp LPU83”, Journal of Biotechnology, 2014, 176, 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
I. Maus, R. Stantscheff, D. Wibberg, Y. Stolze, A. Winkler, A. Pühler, H. König, and A. Schlüter, “Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT”, Journal of Biotechnology, 2014, 192, 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558
D. E. Koeck, D. Wibberg, I. Maus, A. Winkler, A. Albersmeier, V. V. Zverlov, A. Pühler, W. H. Schwarz, W. Liebl, and A. Schlüter, “First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant”, Journal of Biotechnology, 2014, 192, 154-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
D. E. Koeck, D. Wibberg, I. Maus, A. Winkler, A. Albersmeier, V. V. Zverlov, W. Liebl, A. Pühler, W. H. Schwarz, and A. Schlüter, “Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant”, Journal of Biotechnology, 2014, 188, 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
 

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