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544 Publikationen

2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
M. Arnold, D. Wibberg, J. Blom, S. Schatschneider, A. Winkler, Y. Kutter, C. Rückert, A. Albersmeier, S. Albaum, A. Goesmann, et al., “Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum”, Genome announcements, 2015, 3.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
O. Rupp, K. Brinkrolf, C. Buerth, M. Kunigo, J. Schneider, S. Jaenicke, A. Goesmann, A. Pühler, K. - E. Jaeger, and J. F. Ernst, “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”, Journal of Biotechnology, 2015, 211, 20-30.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
D. Wibberg, O. Rupp, L. Jelonek, M. Kröber, B. Verwaaijen, J. Blom, A. Winkler, A. Goesmann, R. Grosch, A. Pühler, et al., “Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system”, Journal of Biotechnology, 2015, 203, 19-21.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297
D. Wibberg, O. Rupp, J. Blom, L. Jelonek, M. Kröber, B. Verwaaijen, A. Goesmann, S. Albaum, R. Grosch, A. Pühler, et al., “Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates”, Plos One, 2015, 10, : e0144769.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2768627
F. G. Eikmeyer, S. Heinl, H. Marx, A. Pühler, R. Grabherr, and A. Schlüter, “Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing”, PLoS ONE, 2015, 10, : e0134149.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
A. Bremges, I. Maus, P. Belmann, F. G. Eikmeyer, A. Winkler, A. Albersmeier, A. Pühler, A. Schlüter, and A. Sczyrba, “Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant”, GigaScience, 2015, 4, : 33.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382
Y. Stolze, M. Zakrzewski, I. Maus, F. G. Eikmeyer, S. Jaenicke, N. Rottmann, C. Siebner, A. Pühler, and A. Schlüter, “Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions”, Biotechnology for Biofuels, 2015, 8, : 14.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733521
J. Stoeveken, R. Singh, S. Kolkenbrock, M. Zakrzewski, D. Wibberg, F. G. Eikmeyer, A. Pühler, A. Schlüter, and B. M. Moerschbacher, “Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample”, Journal of Biotechnology, 2015, 201, 60-68.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717648
S. Hahnke, I. Maus, D. Wibberg, T. Geizecler, A. Pühler, M. Klocke, and A. Schlüter, “Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor”, Journal of Biotechnology, 2015, 193, 34-36.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
V. Ortseifen, A. Winkler, A. Albersmeier, S. Wendler, A. Pühler, J. Kalinowski, and C. Rückert, “Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid”, Journal of Biotechnology, 2015, 194, 81-83.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
S. Wendler, A. Otto, V. Ortseifen, F. Bonn, A. Neshat, S. Schneiker-Bekel, F. Walter, T. Wolf, T. Zemke, U. F. Wehmeier, et al., “Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster”, Journal of Proteomics, 2015, 125, 1-16.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
D. Wibberg, R. Alkhateeb, A. Winkler, A. Albersmeier, S. Schatschneider, S. Albaum, K. Niehaus, G. Hublik, A. Pühler, and F. - J. Vorhölter, “Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)”, Journal of Biotechnology, 2015, 204, 45-46.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
I. Maus, K. G. Cibis, D. Wibberg, A. Winkler, Y. Stolze, H. König, A. Pühler, and A. Schlüter, “Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant”, Journal of Biotechnology, 2015, 203, 17-18.
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2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901302
B. Verwaaijen, A. Pühler, K. Niehaus, and A. Schlüter, “Analysis of the pathogenic interaction of R. solani On L. sativa by means of transcriptomics”, Mycoses, 2015, 58, 49-50.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733509
I. Maus, D. Wibberg, R. Stantscheff, Y. Stolze, J. Blom, F. G. Eikmeyer, J. Fracowiak, H. König, A. Pühler, and A. Schlüter, “Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants”, Journal of Biotechnology, 2015, 201, 43-53.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679
J. M. Vinardell, S. Acosta-Jurado, M. Göttfert, S. Zehner, A. Becker, I. Baena-Ropero, J. Blom, J. C. Crespo-Rivas, A. Goesmann, S. Jaenicke, et al., “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”, Molecular Plant-Microbe Interactions, 2015, 28, 811-824.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
D. E. Koeck, I. Maus, D. Wibberg, A. Winkler, V. V. Zverlov, W. Liebl, A. Pühler, W. H. Schwarz, and A. Schlüter, “Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor”, Journal of Biotechnology, 2015, 214, 59-60.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2778477
L. Dziewit, J. Czarnecki, E. Prochwicz, D. Wibberg, A. Schlüter, A. Pühler, and D. Bartosik, “Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686”, Frontiers in Microbiology, 2015, 6, : 852.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731076
L. Dziewit, A. Pyzik, M. Szuplewska, R. Matlakowska, S. Mielnicki, D. Wibberg, A. Schlüter, A. Pühler, and D. Bartosik, “Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals”, Frontiers in Microbiology, 2015, 6, : 152.
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2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2694187
K. Brinkrolf, R. Hoffrogge, M. Hackl, A. Tauch, M. Baumann, T. Noll, A. Goesmann, A. Pühler, and N. Borth, in Animal Cell Biotechnology In Biologics Production (Eds.: H. Hauser, R. Wagner), Walter De Gruyter, Berlin, Germany, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678800
M. Kröber, D. Wibberg, R. Grosch, F. G. Eikmeyer, B. Verwaaijen, S. P. Chowdhury, A. Hartmann, A. Pühler, and A. Schlüter, “Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing”, Frontiers in Microbiology, 2014, 5, : 252.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2684336
M. - D. Weitze, and A. Pühler, “Concept of Law in Biology Synthetic Biology - Towards an Engineering Science”, European Review, 2014, 22, S102-S112.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717549
T. Geizecler, S. Hahnke, I. Maus, D. Wibberg, A. Pühler, A. Schlüter, and M. Klocke, “Complete genome sequence of Peptoniphilus sp strain ING2-D1G isolated from a mesophilic lab-scale completely stirred tank reactor utilizing maize silage in co-digestion with pig and cattle manure for biomethanation”, Journal of Biotechnology, 2014, 192, 59-61.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
P. Schwientek, A. Neshat, J. Kalinowski, A. Klein, C. Rückert, S. Schneiker-Bekel, S. Wendler, J. Stoye, and A. Pühler, “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”, Journal of Biotechnology, 2014, 190, 85-95.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
T. Jakobi, K. Brinkrolf, A. Tauch, T. Noll, J. Stoye, A. Pühler, and A. Goesmann, “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”, Journal of Biotechnology, 2014, 190, 64-75.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
J. Becker, C. Timmermann, O. Rupp, S. Albaum, K. Brinkrolf, A. Goesmann, A. Pühler, A. Tauch, and T. Noll, “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”, Journal of biotechnology, 2014, 178, 23-31.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2701280
T. Noll, A. Pühler, B. Weisshaar, and V. F. Wendisch, “The Genomics Revolution and its Impact on Future Biotechnology”, Journal of Biotechnology, 2014, 190, 1-1.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658490
L. Dziewit, J. Czarnecki, D. Wibberg, M. Radlinska, P. Mrozek, M. Szymczak, A. Schlüter, A. Pühler, and D. Bartosik, “Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids”, BMC Genomics, 2014, 15, : 124.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
O. Rupp, J. Becker, K. Brinkrolf, C. Timmermann, N. Borth, A. Pühler, T. Noll, and A. Goesmann, “Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines”, PLoS ONE, 2014, 9, e85568.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699819
S. Schatschneider, C. Huber, H. Neuweger, T. Watt, A. Pühler, W. Eisenreich, C. Wittmann, K. Niehaus, and F. - J. Vorhölter, “Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis”, Molecular BioSystems, 2014, 10, 2663-2676.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
P. Tielen, D. Wibberg, J. Blom, N. Rosin, A. - K. Meyer, B. Bunk, M. Schobert, R. Tüpker, S. Schatschneider, C. Rückert, et al., “Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection”, Genome announcements, 2014, 2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694915
S. Hahnke, D. Wibberg, T. Geizecler, A. Pühler, M. Klocke, and A. Schlüter, “Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw”, Journal of Biotechnology, 2014, 184, 199-200.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, A. Goesmann, R. Grosch, A. Pühler, and A. Schlüter, “Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)”, Fungal Biology, 2014, 118, 800-813.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, N. Fischer, A. Steinkämper, A. Pühler, R. Biener, D. Schwartz, and J. Kalinowski, “Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin”, Journal of biotechnology, 2014, 178, 41-42.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685861
G. Torres Tejerizo, M. Pistorio, M. J. Althabegoiti, L. Cervantes, D. Wibberg, A. Schlüter, A. Pühler, A. Lagares, D. Romero, and S. Brom, “Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background”, FEMS Microbiology Ecology, 2014, 88, 565-578.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926
D. Wibberg, P. Tielen, J. Blom, N. Rosin, M. Schobert, R. Tüpker, S. Schatschneider, D. Spilker, A. Albersmeier, A. Goesmann, et al., “Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38”, Genome announcements, 2014, 2, : e00161-14.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2675608
D. Wibberg, G. Torres Tejerizo, M. Florencia Del Papa, C. Martini, A. Pühler, A. Lagares, A. Schlüter, and M. Pistorio, “Genome sequence of the acid-tolerant strain Rhizobium sp LPU83”, Journal of Biotechnology, 2014, 176, 40-41.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
I. Maus, R. Stantscheff, D. Wibberg, Y. Stolze, A. Winkler, A. Pühler, H. König, and A. Schlüter, “Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT”, Journal of Biotechnology, 2014, 192, 40-41.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558
D. E. Koeck, D. Wibberg, I. Maus, A. Winkler, A. Albersmeier, V. V. Zverlov, A. Pühler, W. H. Schwarz, W. Liebl, and A. Schlüter, “First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant”, Journal of Biotechnology, 2014, 192, 154-155.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
D. E. Koeck, D. Wibberg, I. Maus, A. Winkler, A. Albersmeier, V. V. Zverlov, W. Liebl, A. Pühler, W. H. Schwarz, and A. Schlüter, “Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant”, Journal of Biotechnology, 2014, 188, 136-137.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710114
P. D. Townsend, B. Jungwirth, F. Pojer, M. Bußmann, V. A. Money, S. T. Cole, A. Pühler, A. Tauch, M. Bott, M. J. Cann, et al., “The Crystal Structures of Apo and cAMP-Bound GlxR from Corynebacterium glutamicum Reveal Structural and Dynamic Changes upon cAMP Binding in CRP/FNR Family Transcription Factors”, PloS one, 2014, 9, 113265.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
S. Wendler, V. Ortseifen, M. Persicke, A. Klein, A. Neshat, K. Niehaus, S. Schneiker-Bekel, F. Walter, U. F. Wehmeier, J. Kalinowski, et al., “Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110”, Journal of Biotechnology, 2014, 191, 113-120.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676049
A. Schlüter, P. Nordmann, R. A. Bonnin, Y. Millemann, F. G. Eikmeyer, D. Wibberg, A. Pühler, and L. Poirel, “IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolates”, Antimicrobial Agents and Chemotherapy, 2014, 58, 3768-3773.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
D. Wibberg, V. M. Luque-Almagro, M. I. Igeño, A. Bremges, M. D. Roldán, F. Merchán, L. P. Sáez, M. I. Guijo, M. I. Manso, D. Macías, et al., “Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Journal of biotechnology, 2014, 175, 67-68.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969
A. Mentz, A. Neshat, K. Pfeifer-Sancar, A. Pühler, C. Rückert, and J. Kalinowski, “Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032”, BMC Genomics, 2013, 14, 714.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193
F. G. Eikmeyer, A. Rademacher, A. Hanreich, M. Hennig, S. Jaenicke, I. Maus, D. Wibberg, M. Zakrzewski, A. Pühler, M. Klocke, et al., “Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms”, Biotechnology for Biofuels, 2013, 6, : 49.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, F. G. Eikmeyer, A. Goesmann, A. Hartmann, R. Borriss, R. Grosch, A. Pühler, et al., “Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14”, Journal of Biotechnology, 2013, 167, 142-155.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548270
B. Jungwirth, C. Sala, T. A. Kohl, S. Uplekar, J. Baumbach, S. T. Cole, A. Pühler, and A. Tauch, “High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum”, Microbiology, 2013, 159, 12-22.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
D. Wibberg, J. Blom, C. Rückert, A. Winkler, A. Albersmeier, A. Pühler, A. Schlüter, and B. E. Scharf, “Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis”, Journal of Biotechnology, 2013, 168, 731-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
K. A. K. Köhler, C. Rückert, S. Schatschneider, F. - J. Vorhölter, R. Szczepanowski, L. M. Blank, K. Niehaus, A. Goesmann, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil”, Journal of Biotechnology, 2013, 168, 729-730.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
S. Wendler, D. Hürtgen, J. Kalinowski, A. Klein, K. Niehaus, F. Schulte, P. Schwientek, H. Wehlmann, U. F. Wehmeier, and A. Pühler, “The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism”, Journal of Biotechnology, 2013, 167, 178-189.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
K. Brinkrolf, O. Rupp, H. Laux, F. Kollin, W. Ernst, B. Linke, R. Kofler, S. Romand, F. Hesse, W. E. Budach, et al., “Chinese hamster genome sequenced from sorted chromosomes”, Nature Biotechnology, 2013, 31, 694-695.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645247
I. Maus, D. Wibberg, R. Stantscheff, K. Cibis, F. G. Eikmeyer, H. König, A. Pühler, and A. Schlüter, “Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp Mb1 isolated from a production-scale biogas plant”, Journal of Biotechnology, 2013, 168, 734-736.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605230
A. Hanreich, U. Schimpf, M. Zakrzewski, A. Schlüter, D. Benndorf, R. Heyer, E. Rapp, A. Pühler, U. Reichl, and M. Klocke, “Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation”, Systematic and Applied Microbiology, 2013, 36, 330-338.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2565642
T. Dagan, M. Roettger, K. Stucken, G. Landan, R. Koch, P. Major, S. B. Gould, V. V. Goremykin, R. Rippka, N. T. de Marsac, et al., “Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids”, Genome Biology And Evolution, 2013, 5, 31-44.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605244
S. Schatschneider, M. Persicke, T. Watt, G. Hublik, A. Pühler, K. Niehaus, and F. - J. Vorhölter, “Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100”, Journal of Biotechnology, 2013, 167, 123-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, D. Iftime, E. M. Musiol, K. Blin, W. Wohlleben, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids”, Journal of Biotechnology, 2013, 168, 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
D. E. Koeck, D. Wibberg, T. Koellmeier, J. Blom, S. Jaenicke, A. Winkler, A. Albersmeier, V. V. Zverlov, A. Pühler, W. H. Schwarz, et al., “Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation”, Journal of Biotechnology, 2013, 168, 62-63.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557779
S. Weidner, B. Baumgarth, M. Göttfert, S. Jaenicke, A. Pühler, S. Schneiker-Bekel, J. Serrania, R. Szczepanowski, and A. Becker, “Genome Sequence of Sinorhizobium meliloti Rm41”, Genome Announcements, 2013, 1, e00013-12.
PUB | DOI | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207
F. G. Eikmeyer, P. Köfinger, A. Poschenel, S. Jünemann, M. Zakrzewski, S. Heinl, E. Mayrhuber, R. Grabherr, A. Pühler, H. Schwab, et al., “Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging”, Journal of Biotechnology, 2013, 167, 334-343.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557080
R. A. Bonnin, L. Poirel, P. Nordmann, F. G. Eikmeyer, D. Wibberg, A. Pühler, and A. Schlüter, “Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa”, Journal of Antimicrobial Chemotherapy, 2013, 68, 1060-1065.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
P. Schwientek, S. Wendler, A. Neshat, C. Eirich, C. Rückert, A. Klein, U. F. Wehmeier, J. Kalinowski, J. Stoye, and A. Pühler, “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”, Journal of Biotechnology, 2013, 167, 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
V. M. Luque-Almagro, F. Acera, M. I. Igeño, D. Wibberg, M. D. Roldán, L. P. Sáez, M. Hennig, A. Quesada, M. J. Huertas, J. Blom, et al., “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Environmental Microbiology, 2013, 15, 253-270.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
J. Plassmeier, T. Busche, S. Molck, M. Persicke, A. Pühler, C. Rückert, and J. Kalinowski, “A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways”, Journal of Biotechnology, 2013, 163, 225-232.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2546244
D. Wibberg, R. Szczepanowski, F. G. Eikmeyer, A. Pühler, and A. Schlüter, “The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates”, Plasmid, 2013, 69, 127-137.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553286
A. Jungbauer, T. Scheper, and A. Pühler, “Current research and future perspectives of applied biotechnology”, Journal of Biotechnology, 2012, 162, 355.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849
S. Weidner, A. Becker, I. Bonilla, S. Jaenicke, J. Lloret, I. Margaret, A. Pühler, J. E. Ruiz-Sainz, S. Schneiker-Bekel, R. Szczepanowski, et al., “Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103”, Journal of Bacteriology, 2012, 194, 1617-1618.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
M. Zakrzewski, A. Goesmann, S. Jaenicke, S. Jünemann, F. G. Eikmeyer, R. Szczepanowski, W. A. Al-Soud, S. Sørensen, A. Pühler, and A. Schlüter, “Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing”, Journal of Biotechnology, 2012, 158, 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2537690
F. - J. Vorhölter, H. - G. Wiggerich, H. Scheidle, V. K. Sidhu, K. Mrozek, H. Küster, A. Pühler, and K. Niehaus, “Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases”, BMC Microbiology, 2012, 12, 239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279
F. G. Eikmeyer, A. Hadiati, R. Szczepanowski, D. Wibberg, S. Schneiker-Bekel, L. M. Rogers, C. B. Brown, E. M. Top, A. Pühler, and A. Schlüter, “The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution”, Plasmid, 2012, 68, 13-24.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
S. Heinl, D. Wibberg, F. G. Eikmeyer, R. Szczepanowski, J. Blom, B. Linke, A. Goesmann, R. Grabherr, H. Schwab, A. Pühler, et al., “Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage”, Journal of Biotechnology, 2012, 161, 153-166.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
P. Schwientek, R. Szczepanowski, C. Rückert, J. Kalinowski, A. Klein, K. Selber, U. F. Wehmeier, J. Stoye, and A. Pühler, “The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110”, BMC Genomics, 2012, 13, : 112.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
A. Rademacher, M. Zakrzewski, A. Schlüter, M. Schonberg, R. Szczepanowski, A. Goesmann, A. Pühler, and M. Klocke, “Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing”, FEMS Microbiology Ecology, 2012, 79, 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501307
J. Pietruszka, A. Pühler, and G. Schembecker, “Research on industrial biotechnology within the CLIB-Graduate Cluster - Part I”, Journal of Biotechnology, 2012, 159, 121-122.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
P. Meleady, R. Hoffrogge, M. Henry, O. Rupp, J. H. Bort, C. Clarke, K. Brinkrolf, S. Kelly, B. Müller, P. Doolan, et al., “Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics”, Biotechnology and Bioengineering, 2012, 109, 1386-1394.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
M. Hackl, V. Jadhav, T. Jakobi, O. Rupp, K. Brinkrolf, A. Goesmann, A. Pühler, T. Noll, N. Borth, and J. Grillari, “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”, Journal of Biotechnology, 2012, 158, 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501774
V. F. Wendisch, and A. Pühler, “Microbes and industrial biotechnology”, Journal of Biotechnology, 2012, 158, 157-158.
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
T. Hain, R. Ghai, A. Billion, C. T. Kuenne, C. Steinweg, B. Izar, W. Mohamed, M. Mraheil, E. Domann, S. Schaffrath, et al., “Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes”, BMC Genomics, 2012, 13, 144.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
J. Schneider, H. Andrea, J. Blom, S. Jaenicke, C. Rückert, C. Schorsch, R. Szczepanowski, M. Farwick, A. Goesmann, A. Pühler, et al., “Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10”, Eukaryotic Cell, 2012, 11, 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
T. Strobel, A. Al-Dilaimi, J. Blom, A. Gessner, J. Kalinowski, M. Luzhetska, A. Pühler, R. Szczepanowski, A. Bechthold, and C. Rückert, “Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae”, BMC Genomics, 2012, 13, 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
S. Schork, A. Schlüter, J. Blom, S. Schneiker-Bekel, A. Pühler, A. Goesmann, M. Frosch, and C. Schoen, “Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198”, Journal of Bacteriology, 2012, 194, 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
I. Maus, D. Wibberg, R. Stantscheff, F. G. Eikmeyer, A. Seffner, J. Boelter, R. Szczepanowski, J. Blom, S. Jaenicke, H. König, et al., “Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester”, Journal of Bacteriology, 2012, 194, 5487-5488.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513297
J. Pauling, R. Rottger, A. Neuner, H. Salgado, J. Collado-Vides, P. Kalaghatgi, V. Azevedo, A. Tauch, A. Pühler, and J. Baumbach, “On the trail of EHEC/EAEC-unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria”, Integrative Biology, 2012, 4, 728-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
P. Schwientek, R. Szczepanowski, C. Rückert, J. Stoye, and A. Pühler, “Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology”, Journal of Biotechnology, 2011, 155, 68-77.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | PUB-ID: 2401477
B. Mattiasson, and A. Pühler, “Towards sustainable biotechnology”, Journal of Biotechnology, 2011, 152, 113.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J. F. Pothier, F. - J. Vorhölter, J. Blom, A. Goesmann, A. Pühler, T. H. Smits, and B. Duffy, “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, 2011, 323, 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, J. Blom, S. Jaenicke, F. Kollin, O. Rupp, B. Scharf, S. Schneiker-Bekel, R. Szczepanowski, A. Goesmann, J. C. Setubal, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, 2011, 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
A. Küberl, J. Schneider, G. G. Thallinger, I. Anderl, D. Wibberg, T. Hajek, S. Jaenicke, K. Brinkrolf, A. Goesmann, R. Szczepanowski, et al., “High-quality genome sequence of Pichia pastoris CBS7435”, Journal of Biotechnology, 2011, 154, 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
M. Persicke, J. Plassmeier, H. Neuweger, C. Rückert, A. Pühler, and J. Kalinowski, “Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites”, Journal of Biotechnology, 2011, 154, 171-178.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
R. Borriss, X. - H. Chen, C. Rückert, J. Blom, A. Becker, B. Baumgarth, B. Fan, R. Pukall, P. Schumann, C. Sproer, et al., “Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons”, Int J Syst Evol Microbiol, 2011, 61, 1786-1801.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326481
L. Mayer, C. T. Vendruscolo, W. P. da Silva, F. - J. Vorhölter, A. Becker, and A. Pühler, “Insights into the genome of the xanthan-producing phytopathogen Xanthomonas arboricola pv. pruni 109 by comparative genomic hybridization”, Journal of Biotechnology, 2011, 155, 40-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808
J. Plassmeier, M. Persicke, A. Pühler, C. Sterthoff, C. Rückert, and J. Kalinowski, “Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicum”, Journal of Biotechnology, 2011, 159, 1-11.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
J. Becker, C. Timmermann, T. Jakobi, O. Rupp, R. Szczepanowski, M. Hackl, A. Goesmann, A. Tauch, N. Borth, J. Grillari, et al., “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 2011, 5, P6.
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404874
S. Schatschneider, F. - J. Vorhölter, C. Rückert, A. Becker, W. Eisenreich, A. Pühler, and K. Niehaus, “Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling”, Molecular Genetics and Genomics, 2011, 286, 247-259.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
S. Jaenicke, M. Zakrzewski, S. Jünemann, A. Pühler, A. Goesmann, and A. Schlüter, in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (Ed.: F.J. de Bruijn), Wiley-Blackwell, 2011, p. 403-414.
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317680
L. Zhou, F. - J. Vorhölter, Y. - Q. He, B. - L. Jiang, J. - L. Tang, Y. Xu, A. Pühler, and Y. - W. He, “Gene discovery by genome-wide CDS re-prediction and microarray-based transcriptional analysis in phytopathogen Xanthomonas campestris”, BMC Genomics, 2011, 12, 359.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
S. Schneiker-Bekel, D. Wibberg, T. Bekel, J. Blom, B. Linke, H. Neuweger, M. Stiens, F. - J. Vorhölter, S. Weidner, A. Goesmann, et al., “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”, Journal of Biotechnology, In Press, 155, 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
S. Jaenicke, C. Ander, T. Bekel, R. Bisdorf, M. Dröge, K. - H. Gartemann, S. Jünemann, O. Kaiser, L. Krause, F. Tille, et al., “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”, PLoS ONE, 2011, 6, e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 

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