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544 Publikationen

2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595908
Szczepanowski, R., Krahn, I., Bohn, N., Pühler, A., Schlueter, A.: Novel macrolide resistance module carried by the IncP-1 beta resistance plasmid pRSB111, isolated from a wastewater treatment plant. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 51, 673-678 (2007).
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595939
Pühler, A., Strack, D.: Molecular basics of mycorrhizal symbioses. PHYTOCHEMISTRY. 68, 6-7 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune, I., Jochmann, N., Brinkrolf, K., Hueser, A.T., Gerstmeir, R., Eikmanns, B.J., Kalinowski, J., Pühler, A., Tauch, A.: The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum. JOURNAL OF BACTERIOLOGY. 189, 2720-2733 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier, N., Chao, T.-C., Daschkey, S., Muesken, M., Kalinowski, J., Pühler, A., Tauch, A.: A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411. PROTEOMICS. 7, 1076-1096 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631103
Rinas, U., Pühler, A.: In memoriam: Wolf-Dieter Deckwer - Merging process engineering and systems biology. JOURNAL OF BIOTECHNOLOGY. 132, 341 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593538
Schlüter, A., Szczepanowski, R., Pühler, A., Top, E.M.: Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. FEMS MICROBIOLOGY REVIEWS. 31, 449-477 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst, D., Larisch, C., Hueser, A.T., Tauch, A., Pühler, A., Kalinowski, J.: The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes. JOURNAL OF BACTERIOLOGY. 189, 4696-4707 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595014
Schlüter, A., Szczepanowski, R., Kurz, N., Schneiker-Bekel, S., Krahn, I., Pühler, A.: Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 73, 1952-1960 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596137
Del Papa, M.F., Pistorio, M., Draghi, W.O., Lozano, M.J., Giusti, M.A., Medina, C., van Dillewijn, P., Martinez-Abarca, F., Flores, B.M., Ruiz-Sainz, J.E., Megias, M., Pühler, A., Niehaus, K., Toro, N., Lagares, A.: Identification and characterization of a nodH ortholog from the alfalfa-nodulating Or191-like rhizobia. Molecular Plant - Microbe Interactions. 20, 138-145 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593746
Stiens, M., Schneiker-Bekel, S., Pühler, A., Schlüter, A.: Sequence analysis of the 181-kb accessory plasmid pSmeSM11b, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment. FEMS MICROBIOLOGY LETTERS. 271, 297-309 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345
Krause, L., McHardy, A.C., Nattkemper, T.W., Pühler, A., Stoye, J., Meyer, F.: GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research. 35, 540-549 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A.M., Bekel, T., Dondrup, M., Henckel, K., Goesmann, A., Meyer, F., Wipf, D., Requena, N., Hildebrandt, U., Hampp, R., Nehls, U., Krajinski, F., Franken, P., Pühler, A.: Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry. 68, 19-32 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727
Gaigalat, L., Schlüter, J.-P., Hartmann, M., Mormann, S., Tauch, A., Pühler, A., Kalinowski, J.: The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum. BMC Molecular Biology. 8, 104 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593996
Sewald, N., Pühler, A.: Molecular systems biology. JOURNAL OF BIOTECHNOLOGY. 129, 171-172 (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946125
Schlüter, A., Krahn, I., Kollin, F., Bonemann, G., Stiens, M., Szczepanowski, R., Schneiker-Bekel, S., Pühler, A.: IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes. Appl Environ Microbiol. 73, 6345-6350 (2007).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune, I., Becker, A., Paarmann, D., Albersmeier, A., Kalinowski, J., Pühler, A., Tauch, A.: Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression. J Biotechnol. 127, 21-33 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628
Brune, I., Werner, H., Hüser, A.T., Kalinowski, J., Pühler, A., Tauch, A.: The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum. BMC Genomics. 7, : 21 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier, N., Chao, T.C., Kalinowski, J., Pühler, A., Tauch, A.: Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae. PROTEOMICS. 6, 2465-2476 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596821
Selbitschka, W., Keller, M., Miethling-Graff, R., Dresing, U., Schwieger, F., Krahn, I., Homann, I., Dammann-Kalinowski, T., Pühler, A., Tebbe, C.C.: Long-term field release of bioluminescent Sinorhizobium meliloti strains to assess the influence of a recA mutation on the strains' survival. MICROBIAL ECOLOGY. 52, 583-595 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597413
Gottschalk, G., Goebel, W., Pühler, A.: Aspects of prokaryotic genome research. JOURNAL OF BIOTECHNOLOGY. 126, 1-2 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598081
Bönemann, G., Stiens, M., Pühler, A., Schlüter, A.: Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 50, 3075-3080 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
Schneiker-Bekel, S., dos Santos, V.A.P.M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T.N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O.V., Kaminski, F., Khachane, A.N., Lang, S., Linke, B., McHardy, A.C., Meyer, F., Nechitaylo, T., Pühler, A., Regenhardt, D., Rupp, O., Sabirova, J.S., Selbitschka, W., Yakimov, M.M., Timmis, K.N., Vorhölter, F.-J., Weidner, S., Kaiser, O., Golyshin, P.N.: Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology. 24, 997-1004 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598803
Grabley, S., Pühler, A.: BioPerspectives - From basic research to industrial production. JOURNAL OF BIOTECHNOLOGY. 124, 1-3 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
Hansmeier, N., Albersmeier, A., Tauch, A., Damberg, T., Ros, R., Anselmetti, D., Pühler, A., Kalinowski, J.: The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032. Microbiology. 152, 923-935 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
Hansmeier, N., Chao, T.C., Pühler, A., Tauch, A., Kalinowski, J.: The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032. PROTEOMICS. 6, 233-250 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598296
Nielsen, J., Pühler, A.: Highlights from ECB12 - Bringing genomes to life. JOURNAL OF BIOTECHNOLOGY. 124, 627-628 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599383
Stiens, M., Schneiker-Bekel, S., Keller, M., Kuhn, S., Pühler, A., Schlüter, A.: Sequence analysis of the 144-kilobase accessory plasmid pSmeSM11a, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experimerit. Appl Environ Microbiol. 72, 3662-3672 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600185
Gaillard, M., Vallaeys, T., Vorhölter, F.-J., Minoia, M., Werlen, C., Sentchilo, V., Pühler, A., van der Meer, J.R.: The clc element of Pseudomonas sp strain B13, a genomic island with various catabolic properties. JOURNAL OF BACTERIOLOGY. 188, 1999-2013 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
Tauch, A., Trost, E., Bekel, T., Goesmann, A., Ludewig, U., Pühler, A.: Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica. 4, 4-6 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853
Mormann, S., Lömker, A., Rückert, C., Gaigalat, L., Tauch, A., Pühler, A., Kalinowski, J.: Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway. BMC Genomics. 7, : 205 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
Mahne, M., Tauch, A., Pühler, A., Kalinowski, J.: The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins. FEMS MICROBIOLOGY LETTERS. 259, 226-233 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Boehm, M., Friedrich, F., Hurek, T., Krause, L., Linke, B., McHardy, A.C., Sarkar, A., Schneiker-Bekel, S., Syed, A.A., Thauer, R., Vorhölter, F.-J., Weidner, S., Pühler, A., Reinhold-Hurek, B., Kaiser, O., Goesmann, A.: Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology. 24, 1385-1391 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
Hain, T., Steinweg, C., Kuenne, C.T., Billion, A., Ghai, R., Chatterjee, S.S., Domann, E., Kaerst, U., Goesmann, A., Bekel, T., Bartels, D., Kaiser, O., Meyer, F., Pühler, A., Weisshaar, B., Wehland, J., Liang, C., Dandekar, T., Lampidis, R., Kreft, J., Goebel, W., Chakraborty, T.: Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology. 188, 8299-8302 (2006).
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631957
Krause, L., Diaz, N.N., Bartels, D., Edwards, R.A., Pühler, A., Rohwer, F., Meyer, F., Stoye, J.: Finding novel genes in bacterial communities isolated from the environment. BIOINFORMATICS. 22, e281-e289 (2006).
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2447862
Pühler, A., Becker, A., Buhrmester, J., Chao, T.-C., Rüberg, S., Weidner, S.: What can bacterial genome research teach us about iron uptake in Sinorhizobium meliloti? In: Wang, Y.-P., Lin, M., Tian, Z.-X., Elmerich, C., and Newton, W.E. (eds.) Biological Nitrogen Fixation, Sustainable Agriculture and the Environment: Proceedings of the 14th International Nitrogen Fixation Congress. Current Plant Science and Biotechnology in Agriculture, 41. p. 119-122. Springer (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458
Hüser, A.T., Chassagnole, C., Lindley, N.D., Merkamm, M., Guyonvarch, A., Elisakova, V., Patek, M., Kalinowski, J., Brune, I., Pühler, A., Tauch, A.: Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 71, 3255-3268 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
Rey, D.A., Nentwich, S.S., Koch, D.J., Rückert, C., Pühler, A., Tauch, A., Kalinowski, J.: The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032. MOLECULAR MICROBIOLOGY. 56, 871-887 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603291
Braun, S.G., Meyer, A., Olst, O., Pühler, A., Niehaus, K.: Characterization of the Xanthomonas campestris pv. campestris lipopolysaccharide substructures essential for elicitation of an oxidative burst in tobacco cells. Molecular Plant - Microbe Interactions. 18, 674-681 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604683
Fehlberg, V., Vieweg, M.F., Dohmann, E.M.N., Hohnjec, N., Pühler, A., Perlick, A.M., Küster, H.: The promoter of the leghaemoglobin gene VfLb29: functional analysis and identification of modules necessary for its activation in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots. JOURNAL OF EXPERIMENTAL BOTANY. 56, 799-806 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., Stoye, J., Meyer, F., Schuster, S.C.: BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics. 21, 853-859 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604328
Szczepanowski, R., Braun, S., Riedel, V., Schneiker-Bekel, S., Krahn, I., Pühler, A., Schlüter, A.: The 120 592 bp lncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different anti biotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions. MICROBIOLOGY-SGM. 151, 1095-1111 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1864013
Tennstedt, T., Heuer, H., Top, E.M., Szczepanowski, R., Pühler, A., Schlüter, A.: Genomics of resistance plasmids isolated from wastewater treatment plants. Plasmid. 53, 40-41 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602311
Schlüter, A., Heuer, H., Szczepanowski, R., Poler, S.M., Schneiker-Bekel, S., Pühler, A., Top, E.M.: Plasmid pB8 is closely related to the prototype IncP-1 beta plasmid R751 but transfers poorly to Escherichia coli and carries a new transposon encoding a small multidrug resistance efflux protein. PLASMID. 54, 135-148 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Buttner, D., Caldana, C., Gaigalat, L., Goesmann, A., Kay, S., Kirchner, O., Lanz, C., Linke, B., McHardy, A.C., Meyer, F., Mittenhuber, G., Nies, D.H., Niesbach-Klosgen, U., Patschkowski, T., Rückert, C., Rupp, O., Schneiker-Bekel, S., Schuster, S.C., Vorhölter, F.-J., Weber, E., Pühler, A., Bonas, U., Bartels, D., Kaiser, O.: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY. 187, 7254-7266 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602933
Frenzel, A., Manthey, K., Perlick, A.M., Meyer, F., Pühler, A., Küster, H., Krajinski, F.: Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific Medicago truncatula lectin genes. Mol Plant-Microbe Interact. 18, 771-782 (2005).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601308
Reiss, G., Brückl, H., Hütten, A., Schotter, J., Brzeska, M., Panhorst, M., Sudfeld, D., Becker, A., Kamp, P.-B., Pühler, A., Wojczykowski, K., Jutzi, P.: Magnetoresistive sensors and magnetic nanoparticles for biotechnology. Journal of Materials Research. 20, 3294-3302 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771
Rückert, C., Koch, D.J., Rey, D.A., Albersmeier, A., Mormann, S., Pühler, A., Kalinowski, J.: Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction. BMC Genomics. 6, : 121 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602010
Chao, T.-C., Buhrmester, J., Hansmeier, N., Pühler, A., Weidner, S.: Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 71, 5969-5982 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017
Koch, D.J., Rückert, C., Rey, D.A., Mix, A., Pühler, A., Kalinowski, J.: Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 71, 6104-6114 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137
Koch, D.J., Rückert, C., Albersmeier, A., Hüser, A.T., Tauch, A., Pühler, A., Kalinowski, J.: The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate. Mol Microbiol. 58, 480-494 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604877
Risse, J.M., Pühler, A., Flaschel, E.: Production of N-acetyl-phosphinothricin: A substance used for inducing male sterility in transgenic plants. ENGINEERING IN LIFE SCIENCES. 5, 38-45 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603956
Tennstedt, T., Szczepanowski, R., Krahn, I., Pühler, A., Schlüter, A.: Sequence of the 68,869 bp IncP-1 alpha plasmid pTB11 from a waste-water treatment plant reveals a highly conserved backbone, a Tn402-like integron and other transposable elements. PLASMID. 53, 218-238 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604074
Hohnjec, N., Vieweg, M.E., Pühler, A., Becker, A., Küster, H.: Overlaps in the transcriptional profiles of Medicago truncatula roots inoculated with two different Glomus fungi provide insights into the genetic program activated during arbuscular mycorrhiza. Plant Physiol. 137, 1283-1301 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955
Silberbach, M., Hüser, A.T., Kalinowski, J., Pühler, A., Walter, B., Kramer, R., Burkovski, A.: DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum. JOURNAL OF BIOTECHNOLOGY. 119, 357-367 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., Bischoff, N., Brune, I., Chakraborty, T., Kalinowski, J., Meyer, F., Rupp, O., Schneiker-Bekel, S., Viehöver, P., Pühler, A.: Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology. 187, 4671-4682 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606
Brune, I., Brinkrolf, K., Kalinowski, J., Pühler, A., Tauch, A.: The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences. BMC Genomics. 6, : 86 (2005).
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601922
Firnhaber, C., Pühler, A., Küster, H.: EST sequencing and time course microarray hybridizations identify more than 700 Medicago truncatula genes with developmental expression regulation in flowers and pods. Planta. 222, 269-283 (2005).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889
Silberbach, M., Schafer, M., Hüser, A.T., Kalinowski, J., Pühler, A., Kramer, R., Burkovski, A.: Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 71, 2391-2402 (2005).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687
Küster, H., Hohnjec, N., Krajinski, F., El Yahyaoui, F., Manthey, K., Gouzy, J., Dondrup, M., Meyer, F., Kalinowski, J., Brechenmacher, L., van Tuinen, D., Gianinazzi-Pearson, V., Pühler, A., Gamas, P., Becker, A.: Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula. JOURNAL OF BIOTECHNOLOGY. 108, 95-113 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839
McHardy, A.C., Pühler, A., Kalinowski, J., Meyer, F.: Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'. PROTEOMICS. 4, 46-58 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606270
Hartmann, M., Barsch, A., Niehaus, K., Pühler, A., Tauch, A., Kalinowski, J.: The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum. ARCHIVES OF MICROBIOLOGY. 182, 299-312 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
Szczepanowski, R., Krahn, I., Linke, B., Goesmann, A., Pühler, A., Schlüter, A.: Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology. 150, 3613-3630 (2004).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
McHardy, A.C., Goesmann, A., Pühler, A., Meyer, F.: Development of joint application strategies for two microbial gene finders. BIOINFORMATICS. 20, 1622-1631 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608345
Becker, A., Berges, H., Krol, E., Bruand, C., Rüberg, S., Capela, D., Lauber, E., Meilhoc, E., Ampe, F., de Bruijn, F.J., Fourment, J., Francez-Charlot, A., Kahn, D., Küster, H., Liebe, C., Pühler, A., Weidner, S., Batut, J.: Global changes in gene expression in Sinorhizobium meliloti 1021 under microoxic and symbiotic conditions. MOLECULAR PLANT-MICROBE INTERACTIONS. 17, 292-303 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606360
von Stockar, U., Pühler, A.: Highlights from the ECB11: building bridges between biosciences and bioengineering. JOURNAL OF BIOTECHNOLOGY. 113, 1-2 (2004).
PUB | DOI | WoS
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606500
Tauch, A., Bischoff, N., Pühler, A., Kalinowski, J.: Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium. PLASMID. 52, 102-118 (2004).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606644
Brzeska, M., Panhorst, M., Kamp, P.-B., Schotter, J., Reiss, G., Pühler, A., Becker, A., Brückl, H.: Detection and manipulation of biomolecules by magnetic carriers. JOURNAL OF BIOTECHNOLOGY. 112, 25-33 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607832
Chao, T.-C., Becker, A., Buhrmester, J., Pühler, A., Weidner, S.: The Sinorhizobium meliloti fur gene regulates, with dependence on Mn(II), transcription of the sitABCD operon, encoding a metal-type transporter. JOURNAL OF BACTERIOLOGY. 186, 3609-3620 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605648
Heuer, H., Szczepanowski, R., Schneiker-Bekel, S., Pühler, A., Top, E.M., Schlüter, A.: The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1 beta group without any accessory genes. Microbiology. 150, 3591-3599 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605701
Krahn, I., Szczepanowski, R., Pühler, A., Schlüter, A.: Different molecular rearrangements in the integron of the IncP-1 beta resistance plasmid pB10 isolated from a wastewater treatment plant result in elevated beta-lactam resistance levels. ARCHIVES OF MICROBIOLOGY. 182, 429-435 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606228
El Yahyaoui, F., Küster, H., Ben Amor, B., Hohnjec, N., Pühler, A., Becker, A., Gouzy, J., Vernie, T., Gough, C., Niebel, A., Godiard, L., Gamas, P.: Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program(1[w]). PLANT PHYSIOLOGY. 136, 3159-3176 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606475
Manthey, K., Krajinski, F., Hohnjec, N., Firnhaber, C., Pühler, A., Perlick, A.M., Küster, H.: Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses. Mol Plant-Microbe Interact. 17, 1063-1077 (2004).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606843
Schiene, K., Donath, S., Brecht, M., Pühler, A., Niehaus, K.: A Rab-related small GTP binding protein is predominantly expressed in root nodules of Medicago sativa. Molecular Genetics and Genomics. 272, 57-66 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773148
Ros, R., Eckel, R., Bartels, F.W., Sischka, A., Baumgarth, B., Wilking, S.D., Pühler, A., Sewald, N., Becker, A., Anselmetti, D.: Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications. Journal of Biotechnology. 112, 5-12 (2004).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130
Hansmeier, N., Bartels, F.W., Ros, R., Anselmetti, D., Tauch, A., Pühler, A., Kalinowski, J.: Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy. J Biotechnol. 112, 177-193 (2004).
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608095
Schotter, J., Kamp, P.-B., Becker, A., Pühler, A., Reiss, G., Brückl, H.: Comparison of a prototype magnetoresistive biosensor to standard fluorescent DNA detection. BIOSENSORS & BIOELECTRONICS. 19, 1149-1156 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608254
Pühler, A., Arlat, M., Becker, A., Gottfert, M., Morrissey, J.P., O'Gara, F.: What can bacterial genome research teach us about bacteria-plant interactions? Current Opinion in Plant Biology. 7, 137-147 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608336
Vieweg, M.F., Fruhling, M., Quandt, H.J., Heim, U., Baumlein, H., Pühler, A., Küster, H., Perlick, A.M.: The promoter of the Vicia faba L. leghemoglobin gene VfLb29 is specifically activated in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots from different legume and nonlegume plants. Mol Plant Microbe Interact. 17, 62-69 (2004).
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773125
Kleine, H., Wilke, R., Pelargus, C., Rott, K., Pühler, A., Reiss, G., Ros, R., Anselmetti, D.: Absence of intrinsic electric conductivity in single dsDNA molecules. Journal of Biotechnology. 112, 91-95 (2004).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286
Goesmann, A., Linke, B., Rupp, O., Krause, L., Bartels, D., Dondrup, M., McHardy, A.C., Wilke, A., Pühler, A., Meyer, F.: Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. JOURNAL OF BIOTECHNOLOGY. 106, 157-167 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609306
Vorhölter, F.-J., Thias, T., Meyer, F., Bekel, T., Kaiser, O., Pühler, A., Niehaus, K.: Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition. Journal of Biotechnology. 106, 193-202 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609647
Schlüter, A., Heuer, H., Szczepanowski, R., Forney, L.J., Thomas, C.M., Pühler, A., Top, E.M.: The 64 508 bp IncP-1 beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1 beta group. Microbiology. 149, 3139-3153 (2003).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610221
Pühler, A., Tauch, A.: A new era in Corynebacterium glutamicum biotechnology. JOURNAL OF BIOTECHNOLOGY. 104, 1-3 (2003).
PUB | DOI | WoS
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269
Rückert, C., Pühler, A., Kalinowski, J.: Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation. JOURNAL OF BIOTECHNOLOGY. 104, 213-228 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611452
Weidner, S., Pühler, A., Küster, H.: Genomics insights into symbiotic nitrogen fixation. CURRENT OPINION IN BIOTECHNOLOGY. 14, 200-205 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609247
Pühler, A., Selbitschka, W.: Genome research on bacteria relevant for agriculture, environment and biotechnology. JOURNAL OF BIOTECHNOLOGY. 106, 119-120 (2003).
PUB | DOI | WoS
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610193
Hohnjec, N., Perlick, A.M., Pühler, A., Küster, H.: The Medicago truncatula sucrose synthase gene MtSucS1 is activated both in the infected region of root nodules and in the cortex of roots colonized by arbuscular mycorrhizal fungi. Mol Plant Microbe Interact. 16, 903-915 (2003).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610484
Tennstedt, T., Szczepanowski, R., Braun, S., Pühler, A., Schluter, A.: Occurrence of integron-associated resistance gene cassettes located on antibiotic resistance plasmids isolated from a wastewater treatment plant. FEMS MICROBIOLOGY ECOLOGY. 45, 239-252 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014
Brand, S., Niehaus, K., Pühler, A., Kalinowski, J.: Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope. Archives of Microbiology. 180, 33-44 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260
Hartmann, M., Tauch, A., Eggeling, L., Bathe, B., Mockel, B., Pühler, A., Kalinowski, J.: Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum. J Biotechnol. 104, 199-211 (2003).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
Kaiser, O., Bartels, D., Bekel, T., Goesmann, A., Kespohl, S., Pühler, A., Meyer, F.: Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique. JOURNAL OF BIOTECHNOLOGY. 106, 121-133 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., Sczyrba, A., Pühler, A., Meyer, F.: EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY. 106, 135-146 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272
Wilke, A., Rückert, C., Bartels, D., Dondrup, M., Goesmann, A., Hüser, A.T., Kespohl, S., Linke, B., Mahne, M., McHardy, A., Pühler, A., Meyer, F.: Bioinformatics support for high-throughput proteomics. JOURNAL OF BIOTECHNOLOGY. 106, 147-156 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609328
Rüberg, S., Tian, Z.X., Krol, E., Linke, B., Meyer, F., Wang, Y.P., Pühler, A., Weidner, S., Becker, A.: Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression. JOURNAL OF BIOTECHNOLOGY. 106, 255-268 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274
McHardy, A.C., Tauch, A., Rückert, C., Pühler, A., Kalinowski, J.: Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum. J Biotechnol. 104, 229-240 (2003).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324
Tauch, A., Schlüter, A., Bischoff, N., Goesmann, A., Meyer, F., Pühler, A.: The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family. Molecular Genetics and Genomics. 268, 570-584 (2003).
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer, F., Goesmann, A., McHardy, A.C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., Pühler, A.: GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research. 31, 2187-2195 (2003).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
Tauch, A., Pühler, A., Kalinowski, J., Thierbach, G.: Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics. JOURNAL OF BIOTECHNOLOGY. 104, 27-40 (2003).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
Rey, D.A., Pühler, A., Kalinowski, J.: The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum. JOURNAL OF BIOTECHNOLOGY. 103, 51-65 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609315
Golyshin, P.N., Martins Dos Santos, V.A., Kaiser, O., Ferrer, M., Sabirova, Y.S., Lünsdorf, H., Chernikova, T.N., Golyshina, O.V., Yakimov, M.M., Pühler, A., Timmis, K.N.: Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. Journal of Biotechnology. 106, 215-220 (2003).
PUB | DOI | WoS | PubMed | Europe PMC
 

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