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544 Publikationen

2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595908
Szczepanowski R, Krahn I, Bohn N, Pühler A, Schlueter A (2007)
Novel macrolide resistance module carried by the IncP-1 beta resistance plasmid pRSB111, isolated from a wastewater treatment plant.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 51(2): 673-678.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595939
Pühler A, Strack D (2007)
Molecular basics of mycorrhizal symbioses.
PHYTOCHEMISTRY 68(1): 6-7.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune I, Jochmann N, Brinkrolf K, Hueser AT, Gerstmeir R, Eikmanns BJ, Kalinowski J, Pühler A, Tauch A (2007)
The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum.
JOURNAL OF BACTERIOLOGY 189(7): 2720-2733.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier N, Chao T-C, Daschkey S, Muesken M, Kalinowski J, Pühler A, Tauch A (2007)
A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411.
PROTEOMICS 7(7): 1076-1096.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631103
Rinas U, Pühler A (2007)
In memoriam: Wolf-Dieter Deckwer - Merging process engineering and systems biology.
JOURNAL OF BIOTECHNOLOGY 132(4): 341.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593538
Schlüter A, Szczepanowski R, Pühler A, Top EM (2007)
Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool.
FEMS MICROBIOLOGY REVIEWS 31(4): 449-477.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst D, Larisch C, Hueser AT, Tauch A, Pühler A, Kalinowski J (2007)
The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes.
JOURNAL OF BACTERIOLOGY 189(13): 4696-4707.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595014
Schlüter A, Szczepanowski R, Kurz N, Schneiker-Bekel S, Krahn I, Pühler A (2007)
Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73(6): 1952-1960.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596137
Del Papa MF, Pistorio M, Draghi WO, Lozano MJ, Giusti MA, Medina C, van Dillewijn P, Martinez-Abarca F, Flores BM, Ruiz-Sainz JE, Megias M, Pühler A, Niehaus K, Toro N, Lagares A (2007)
Identification and characterization of a nodH ortholog from the alfalfa-nodulating Or191-like rhizobia.
Molecular Plant - Microbe Interactions 20(2): 138-145.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593746
Stiens M, Schneiker-Bekel S, Pühler A, Schlüter A (2007)
Sequence analysis of the 181-kb accessory plasmid pSmeSM11b, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment.
FEMS MICROBIOLOGY LETTERS 271(2): 297-309.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster H, Becker A, Firnhaber C, Hohnjec N, Manthey K, Perlick AM, Bekel T, Dondrup M, Henckel K, Goesmann A, Meyer F, Wipf D, Requena N, Hildebrandt U, Hampp R, Nehls U, Krajinski F, Franken P, Pühler A (2007)
Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.
Phytochemistry 68(1): 19-32.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345
Krause L, McHardy AC, Nattkemper TW, Pühler A, Stoye J, Meyer F (2007)
GISMO - gene identification using a support vector machine for ORF classification.
Nucleic Acids Research 35(2): 540-549.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727
Gaigalat L, Schlüter J-P, Hartmann M, Mormann S, Tauch A, Pühler A, Kalinowski J (2007)
The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum.
BMC Molecular Biology 8(1): 104.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593996
Sewald N, Pühler A (2007)
Molecular systems biology.
JOURNAL OF BIOTECHNOLOGY 129(2): 171-172.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946125
Schlüter A, Krahn I, Kollin F, Bonemann G, Stiens M, Szczepanowski R, Schneiker-Bekel S, Pühler A (2007)
IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes.
Appl Environ Microbiol 73(20): 6345-6350.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune I, Becker A, Paarmann D, Albersmeier A, Kalinowski J, Pühler A, Tauch A (2006)
Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression.
J Biotechnol 127(1): 21-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628
Brune I, Werner H, Hüser AT, Kalinowski J, Pühler A, Tauch A (2006)
The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum.
BMC Genomics 7(1): 21.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier N, Chao TC, Kalinowski J, Pühler A, Tauch A (2006)
Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae.
PROTEOMICS 6(8): 2465-2476.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597413
Gottschalk G, Goebel W, Pühler A (2006)
Aspects of prokaryotic genome research.
JOURNAL OF BIOTECHNOLOGY 126(1): 1-2.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598081
Bönemann G, Stiens M, Pühler A, Schlüter A (2006)
Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 50(9): 3075-3080.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
Schneiker-Bekel S, dos Santos VAPM, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter F-J, Weidner S, Kaiser O, Golyshin PN (2006)
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Nature Biotechnology 24(8): 997-1004.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598803
Grabley S, Pühler A (2006)
BioPerspectives - From basic research to industrial production.
JOURNAL OF BIOTECHNOLOGY 124(1): 1-3.
PUB | DOI | WoS
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596821
Selbitschka W, Keller M, Miethling-Graff R, Dresing U, Schwieger F, Krahn I, Homann I, Dammann-Kalinowski T, Pühler A, Tebbe CC (2006)
Long-term field release of bioluminescent Sinorhizobium meliloti strains to assess the influence of a recA mutation on the strains' survival.
MICROBIAL ECOLOGY 52(3): 583-595.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
Hansmeier N, Albersmeier A, Tauch A, Damberg T, Ros R, Anselmetti D, Pühler A, Kalinowski J (2006)
The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032.
Microbiology 152(4): 923-935.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
Hansmeier N, Chao TC, Pühler A, Tauch A, Kalinowski J (2006)
The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032.
PROTEOMICS 6(1): 233-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598296
Nielsen J, Pühler A (2006)
Highlights from ECB12 - Bringing genomes to life.
JOURNAL OF BIOTECHNOLOGY 124(4): 627-628.
PUB | DOI | WoS
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599383
Stiens M, Schneiker-Bekel S, Keller M, Kuhn S, Pühler A, Schlüter A (2006)
Sequence analysis of the 144-kilobase accessory plasmid pSmeSM11a, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experimerit.
Appl Environ Microbiol 72(5): 3662-3672.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600185
Gaillard M, Vallaeys T, Vorhölter F-J, Minoia M, Werlen C, Sentchilo V, Pühler A, van der Meer JR (2006)
The clc element of Pseudomonas sp strain B13, a genomic island with various catabolic properties.
JOURNAL OF BACTERIOLOGY 188(5): 1999-2013.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
Tauch A, Trost E, Bekel T, Goesmann A, Ludewig U, Pühler A (2006)
Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System.
Biochemica 4: 4-6.
PUB
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853
Mormann S, Lömker A, Rückert C, Gaigalat L, Tauch A, Pühler A, Kalinowski J (2006)
Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway.
BMC Genomics 7(1): 205.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
Mahne M, Tauch A, Pühler A, Kalinowski J (2006)
The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins.
FEMS MICROBIOLOGY LETTERS 259(2): 226-233.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Boehm M, Friedrich F, Hurek T, Krause L, Linke B, McHardy AC, Sarkar A, Schneiker-Bekel S, Syed AA, Thauer R, Vorhölter F-J, Weidner S, Pühler A, Reinhold-Hurek B, Kaiser O, Goesmann A (2006)
Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72.
Nature Biotechnology 24(11): 1385-1391.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
Hain T, Steinweg C, Kuenne CT, Billion A, Ghai R, Chatterjee SS, Domann E, Kaerst U, Goesmann A, Bekel T, Bartels D, Kaiser O, Meyer F, Pühler A, Weisshaar B, Wehland J, Liang C, Dandekar T, Lampidis R, Kreft J, Goebel W, Chakraborty T (2006)
Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.
Journal of Bacteriology 188(23): 8299-8302.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631957
Krause L, Diaz NN, Bartels D, Edwards RA, Pühler A, Rohwer F, Meyer F, Stoye J (2006)
Finding novel genes in bacterial communities isolated from the environment.
BIOINFORMATICS 22(14): e281-e289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2447862
Pühler A, Becker A, Buhrmester J, Chao T-C, Rüberg S, Weidner S (2005)
What can bacterial genome research teach us about iron uptake in Sinorhizobium meliloti?
In: Biological Nitrogen Fixation, Sustainable Agriculture and the Environment: Proceedings of the 14th International Nitrogen Fixation Congress. Wang Y-P, Lin M, Tian Z-X, Elmerich C, Newton WE (Eds); Current Plant Science and Biotechnology in Agriculture, 41, Springer: 119-122.
PUB
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458
Hüser AT, Chassagnole C, Lindley ND, Merkamm M, Guyonvarch A, Elisakova V, Patek M, Kalinowski J, Brune I, Pühler A, Tauch A (2005)
Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(6): 3255-3268.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
Rey DA, Nentwich SS, Koch DJ, Rückert C, Pühler A, Tauch A, Kalinowski J (2005)
The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032.
MOLECULAR MICROBIOLOGY 56(4): 871-887.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603291
Braun SG, Meyer A, Olst O, Pühler A, Niehaus K (2005)
Characterization of the Xanthomonas campestris pv. campestris lipopolysaccharide substructures essential for elicitation of an oxidative burst in tobacco cells.
Molecular Plant - Microbe Interactions 18(7): 674-681.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604683
Fehlberg V, Vieweg MF, Dohmann EMN, Hohnjec N, Pühler A, Perlick AM, Küster H (2005)
The promoter of the leghaemoglobin gene VfLb29: functional analysis and identification of modules necessary for its activation in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots.
JOURNAL OF EXPERIMENTAL BOTANY 56(413): 799-806.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302
Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC (2005)
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bioinformatics 21(7): 853-859.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604328
Szczepanowski R, Braun S, Riedel V, Schneiker-Bekel S, Krahn I, Pühler A, Schlüter A (2005)
The 120 592 bp lncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different anti biotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions.
MICROBIOLOGY-SGM 151(4): 1095-1111.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1864013
Tennstedt T, Heuer H, Top EM, Szczepanowski R, Pühler A, Schlüter A (2005)
Genomics of resistance plasmids isolated from wastewater treatment plants.
Plasmid 53(1): 40-41.
PUB
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602311
Schlüter A, Heuer H, Szczepanowski R, Poler SM, Schneiker-Bekel S, Pühler A, Top EM (2005)
Plasmid pB8 is closely related to the prototype IncP-1 beta plasmid R751 but transfers poorly to Escherichia coli and carries a new transposon encoding a small multidrug resistance efflux protein.
PLASMID 54(2): 135-148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klosgen U, Patschkowski T, Rückert C, Rupp O, Schneiker-Bekel S, Schuster SC, Vorhölter F-J, Weber E, Pühler A, Bonas U, Bartels D, Kaiser O (2005)
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
JOURNAL OF BACTERIOLOGY 187(21): 7254-7266.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602933
Frenzel A, Manthey K, Perlick AM, Meyer F, Pühler A, Küster H, Krajinski F (2005)
Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific Medicago truncatula lectin genes.
Mol Plant-Microbe Interact 18(8): 771-782.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601308
Reiss G, Brückl H, Hütten A, Schotter J, Brzeska M, Panhorst M, Sudfeld D, Becker A, Kamp P-B, Pühler A, Wojczykowski K, Jutzi P (2005)
Magnetoresistive sensors and magnetic nanoparticles for biotechnology.
Journal of Materials Research 20(12): 3294-3302.
PUB | DOI | WoS
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771
Rückert C, Koch DJ, Rey DA, Albersmeier A, Mormann S, Pühler A, Kalinowski J (2005)
Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction.
BMC Genomics 6(1): 121.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602010
Chao T-C, Buhrmester J, Hansmeier N, Pühler A, Weidner S (2005)
Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(10): 5969-5982.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017
Koch DJ, Rückert C, Rey DA, Mix A, Pühler A, Kalinowski J (2005)
Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(10): 6104-6114.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137
Koch DJ, Rückert C, Albersmeier A, Hüser AT, Tauch A, Pühler A, Kalinowski J (2005)
The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate.
Mol Microbiol 58(2): 480-494.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604877
Risse JM, Pühler A, Flaschel E (2005)
Production of N-acetyl-phosphinothricin: A substance used for inducing male sterility in transgenic plants.
ENGINEERING IN LIFE SCIENCES 5(1): 38-45.
PUB | DOI | WoS
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603956
Tennstedt T, Szczepanowski R, Krahn I, Pühler A, Schlüter A (2005)
Sequence of the 68,869 bp IncP-1 alpha plasmid pTB11 from a waste-water treatment plant reveals a highly conserved backbone, a Tn402-like integron and other transposable elements.
PLASMID 53(3): 218-238.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604074
Hohnjec N, Vieweg ME, Pühler A, Becker A, Küster H (2005)
Overlaps in the transcriptional profiles of Medicago truncatula roots inoculated with two different Glomus fungi provide insights into the genetic program activated during arbuscular mycorrhiza.
Plant Physiol 137(4): 1283-1301.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955
Silberbach M, Hüser AT, Kalinowski J, Pühler A, Walter B, Kramer R, Burkovski A (2005)
DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum.
JOURNAL OF BIOTECHNOLOGY 119(4): 357-367.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker-Bekel S, Viehöver P, Pühler A (2005)
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Journal of Bacteriology 187(13): 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606
Brune I, Brinkrolf K, Kalinowski J, Pühler A, Tauch A (2005)
The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences.
BMC Genomics 6(1): 86.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889
Silberbach M, Schafer M, Hüser AT, Kalinowski J, Pühler A, Kramer R, Burkovski A (2005)
Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(5): 2391-2402.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601922
Firnhaber C, Pühler A, Küster H (2005)
EST sequencing and time course microarray hybridizations identify more than 700 Medicago truncatula genes with developmental expression regulation in flowers and pods.
Planta 222(2): 269-283.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687
Küster H, Hohnjec N, Krajinski F, El Yahyaoui F, Manthey K, Gouzy J, Dondrup M, Meyer F, Kalinowski J, Brechenmacher L, van Tuinen D, Gianinazzi-Pearson V, Pühler A, Gamas P, Becker A (2004)
Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula.
JOURNAL OF BIOTECHNOLOGY 108(2): 95-113.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839
McHardy AC, Pühler A, Kalinowski J, Meyer F (2004)
Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'.
PROTEOMICS 4(1): 46-58.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606270
Hartmann M, Barsch A, Niehaus K, Pühler A, Tauch A, Kalinowski J (2004)
The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum.
ARCHIVES OF MICROBIOLOGY 182(4): 299-312.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
Szczepanowski R, Krahn I, Linke B, Goesmann A, Pühler A, Schlüter A (2004)
Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system.
Microbiology 150(11): 3613-3630.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
McHardy AC, Goesmann A, Pühler A, Meyer F (2004)
Development of joint application strategies for two microbial gene finders.
BIOINFORMATICS 20(10): 1622-1631.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608345
Becker A, Berges H, Krol E, Bruand C, Rüberg S, Capela D, Lauber E, Meilhoc E, Ampe F, de Bruijn FJ, Fourment J, Francez-Charlot A, Kahn D, Küster H, Liebe C, Pühler A, Weidner S, Batut J (2004)
Global changes in gene expression in Sinorhizobium meliloti 1021 under microoxic and symbiotic conditions.
MOLECULAR PLANT-MICROBE INTERACTIONS 17(3): 292-303.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606360
von Stockar U, Pühler A (2004)
Highlights from the ECB11: building bridges between biosciences and bioengineering.
JOURNAL OF BIOTECHNOLOGY 113(1-3): 1-2.
PUB | DOI | WoS
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606500
Tauch A, Bischoff N, Pühler A, Kalinowski J (2004)
Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium.
PLASMID 52(2): 102-118.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606644
Brzeska M, Panhorst M, Kamp P-B, Schotter J, Reiss G, Pühler A, Becker A, Brückl H (2004)
Detection and manipulation of biomolecules by magnetic carriers.
JOURNAL OF BIOTECHNOLOGY 112(1-2): 25-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607832
Chao T-C, Becker A, Buhrmester J, Pühler A, Weidner S (2004)
The Sinorhizobium meliloti fur gene regulates, with dependence on Mn(II), transcription of the sitABCD operon, encoding a metal-type transporter.
JOURNAL OF BACTERIOLOGY 186(11): 3609-3620.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605648
Heuer H, Szczepanowski R, Schneiker-Bekel S, Pühler A, Top EM, Schlüter A (2004)
The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1 beta group without any accessory genes.
Microbiology 150(11): 3591-3599.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605701
Krahn I, Szczepanowski R, Pühler A, Schlüter A (2004)
Different molecular rearrangements in the integron of the IncP-1 beta resistance plasmid pB10 isolated from a wastewater treatment plant result in elevated beta-lactam resistance levels.
ARCHIVES OF MICROBIOLOGY 182(6): 429-435.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606228
El Yahyaoui F, Küster H, Ben Amor B, Hohnjec N, Pühler A, Becker A, Gouzy J, Vernie T, Gough C, Niebel A, Godiard L, Gamas P (2004)
Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program(1[w]).
PLANT PHYSIOLOGY 136(2): 3159-3176.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606475
Manthey K, Krajinski F, Hohnjec N, Firnhaber C, Pühler A, Perlick AM, Küster H (2004)
Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses.
Mol Plant-Microbe Interact 17(10): 1063-1077.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606843
Schiene K, Donath S, Brecht M, Pühler A, Niehaus K (2004)
A Rab-related small GTP binding protein is predominantly expressed in root nodules of Medicago sativa.
Molecular Genetics and Genomics 272(1): 57-66.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773148
Ros R, Eckel R, Bartels FW, Sischka A, Baumgarth B, Wilking SD, Pühler A, Sewald N, Becker A, Anselmetti D (2004)
Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications.
Journal of Biotechnology 112(1-2): 5-12.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130
Hansmeier N, Bartels FW, Ros R, Anselmetti D, Tauch A, Pühler A, Kalinowski J (2004)
Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy.
J Biotechnol 112(1-2): 177-193.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608095
Schotter J, Kamp P-B, Becker A, Pühler A, Reiss G, Brückl H (2004)
Comparison of a prototype magnetoresistive biosensor to standard fluorescent DNA detection.
BIOSENSORS & BIOELECTRONICS 19(10): 1149-1156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608254
Pühler A, Arlat M, Becker A, Gottfert M, Morrissey JP, O'Gara F (2004)
What can bacterial genome research teach us about bacteria-plant interactions?
Current Opinion in Plant Biology 7(2): 137-147.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608336
Vieweg MF, Fruhling M, Quandt HJ, Heim U, Baumlein H, Pühler A, Küster H, Perlick AM (2004)
The promoter of the Vicia faba L. leghemoglobin gene VfLb29 is specifically activated in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots from different legume and nonlegume plants.
Mol Plant Microbe Interact 17(1): 62-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773125
Kleine H, Wilke R, Pelargus C, Rott K, Pühler A, Reiss G, Ros R, Anselmetti D (2004)
Absence of intrinsic electric conductivity in single dsDNA molecules.
Journal of Biotechnology 112(1-2): 91-95.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286
Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F (2003)
Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 157-167.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609306
Vorhölter F-J, Thias T, Meyer F, Bekel T, Kaiser O, Pühler A, Niehaus K (2003)
Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition.
Journal of Biotechnology 106(2-3): 193-202.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609647
Schlüter A, Heuer H, Szczepanowski R, Forney LJ, Thomas CM, Pühler A, Top EM (2003)
The 64 508 bp IncP-1 beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1 beta group.
Microbiology 149: 3139-3153.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610221
Pühler A, Tauch A (2003)
A new era in Corynebacterium glutamicum biotechnology.
JOURNAL OF BIOTECHNOLOGY 104(1-3): 1-3.
PUB | DOI | WoS
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269
Rückert C, Pühler A, Kalinowski J (2003)
Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation.
JOURNAL OF BIOTECHNOLOGY 104(1-3): 213-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611452
Weidner S, Pühler A, Küster H (2003)
Genomics insights into symbiotic nitrogen fixation.
CURRENT OPINION IN BIOTECHNOLOGY 14(2): 200-205.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609247
Pühler A, Selbitschka W (2003)
Genome research on bacteria relevant for agriculture, environment and biotechnology.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 119-120.
PUB | DOI | WoS
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610193
Hohnjec N, Perlick AM, Pühler A, Küster H (2003)
The Medicago truncatula sucrose synthase gene MtSucS1 is activated both in the infected region of root nodules and in the cortex of roots colonized by arbuscular mycorrhizal fungi.
Mol Plant Microbe Interact 16(10): 903-915.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610484
Tennstedt T, Szczepanowski R, Braun S, Pühler A, Schluter A (2003)
Occurrence of integron-associated resistance gene cassettes located on antibiotic resistance plasmids isolated from a wastewater treatment plant.
FEMS MICROBIOLOGY ECOLOGY 45(3): 239-252.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014
Brand S, Niehaus K, Pühler A, Kalinowski J (2003)
Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope.
Archives of Microbiology 180(1): 33-44.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260
Hartmann M, Tauch A, Eggeling L, Bathe B, Mockel B, Pühler A, Kalinowski J (2003)
Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum.
J Biotechnol 104(1-3): 199-211.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Pühler A, Meyer F (2003)
Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 121-133.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274
McHardy AC, Tauch A, Rückert C, Pühler A, Kalinowski J (2003)
Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum.
J Biotechnol 104(1-3): 229-240.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)
EMMA: a platform for consistent storage and efficient analysis of microarray data.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272
Wilke A, Rückert C, Bartels D, Dondrup M, Goesmann A, Hüser AT, Kespohl S, Linke B, Mahne M, McHardy A, Pühler A, Meyer F (2003)
Bioinformatics support for high-throughput proteomics.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 147-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609328
Rüberg S, Tian ZX, Krol E, Linke B, Meyer F, Wang YP, Pühler A, Weidner S, Becker A (2003)
Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 255-268.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324
Tauch A, Schlüter A, Bischoff N, Goesmann A, Meyer F, Pühler A (2003)
The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family.
Molecular Genetics and Genomics 268(5): 570-584.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)
GenDB - an open source genome annotation system for prokaryote genomes.
Nucleic Acids Research 31(8): 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
Tauch A, Pühler A, Kalinowski J, Thierbach G (2003)
Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics.
JOURNAL OF BIOTECHNOLOGY 104(1-3): 27-40.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
Rey DA, Pühler A, Kalinowski J (2003)
The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum.
JOURNAL OF BIOTECHNOLOGY 103(1): 51-65.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609315
Golyshin PN, Martins Dos Santos VA, Kaiser O, Ferrer M, Sabirova YS, Lünsdorf H, Chernikova TN, Golyshina OV, Yakimov MM, Pühler A, Timmis KN (2003)
Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.
Journal of Biotechnology 106(2-3): 215-220.
PUB | DOI | WoS | PubMed | Europe PMC
 

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