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544 Publikationen

2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595908
R. Szczepanowski, I. Krahn, N. Bohn, A. Pühler, and A. Schlueter, “Novel macrolide resistance module carried by the IncP-1 beta resistance plasmid pRSB111, isolated from a wastewater treatment plant”, ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2007, 51, 673-678.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595939
A. Pühler, and D. Strack, “Molecular basics of mycorrhizal symbioses”, PHYTOCHEMISTRY, 2007, 68, 6-7.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
I. Brune, N. Jochmann, K. Brinkrolf, A. T. Hueser, R. Gerstmeir, B. J. Eikmanns, J. Kalinowski, A. Pühler, and A. Tauch, “The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum”, JOURNAL OF BACTERIOLOGY, 2007, 189, 2720-2733.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
N. Hansmeier, T. - C. Chao, S. Daschkey, M. Muesken, J. Kalinowski, A. Pühler, and A. Tauch, “A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411”, PROTEOMICS, 2007, 7, 1076-1096.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631103
U. Rinas, and A. Pühler, “In memoriam: Wolf-Dieter Deckwer - Merging process engineering and systems biology”, JOURNAL OF BIOTECHNOLOGY, 2007, 132, 341.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593538
A. Schlüter, R. Szczepanowski, A. Pühler, and E. M. Top, “Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool”, FEMS MICROBIOLOGY REVIEWS, 2007, 31, 449-477.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
D. Nakunst, C. Larisch, A. T. Hueser, A. Tauch, A. Pühler, and J. Kalinowski, “The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes”, JOURNAL OF BACTERIOLOGY, 2007, 189, 4696-4707.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595014
A. Schlüter, R. Szczepanowski, N. Kurz, S. Schneiker-Bekel, I. Krahn, and A. Pühler, “Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73, 1952-1960.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596137
M. F. Del Papa, M. Pistorio, W. O. Draghi, M. J. Lozano, M. A. Giusti, C. Medina, P. van Dillewijn, F. Martinez-Abarca, B. M. Flores, J. E. Ruiz-Sainz, et al., “Identification and characterization of a nodH ortholog from the alfalfa-nodulating Or191-like rhizobia”, Molecular Plant - Microbe Interactions, 2007, 20, 138-145.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593746
M. Stiens, S. Schneiker-Bekel, A. Pühler, and A. Schlüter, “Sequence analysis of the 181-kb accessory plasmid pSmeSM11b, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment”, FEMS MICROBIOLOGY LETTERS, 2007, 271, 297-309.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345
L. Krause, A. C. McHardy, T. W. Nattkemper, A. Pühler, J. Stoye, and F. Meyer, “GISMO - gene identification using a support vector machine for ORF classification”, Nucleic Acids Research, 2007, 35, 540-549.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
H. Küster, A. Becker, C. Firnhaber, N. Hohnjec, K. Manthey, A. M. Perlick, T. Bekel, M. Dondrup, K. Henckel, A. Goesmann, et al., “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”, Phytochemistry, 2007, 68, 19-32.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727
L. Gaigalat, J. - P. Schlüter, M. Hartmann, S. Mormann, A. Tauch, A. Pühler, and J. Kalinowski, “The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum”, BMC Molecular Biology, 2007, 8, 104.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593996
N. Sewald, and A. Pühler, “Molecular systems biology”, JOURNAL OF BIOTECHNOLOGY, 2007, 129, 171-172.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946125
A. Schlüter, I. Krahn, F. Kollin, G. Bonemann, M. Stiens, R. Szczepanowski, S. Schneiker-Bekel, and A. Pühler, “IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes”, Appl Environ Microbiol, 2007, 73, 6345-6350.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
I. Brune, A. Becker, D. Paarmann, A. Albersmeier, J. Kalinowski, A. Pühler, and A. Tauch, “Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression”, J Biotechnol, 2006, 127, 21-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628
I. Brune, H. Werner, A. T. Hüser, J. Kalinowski, A. Pühler, and A. Tauch, “The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum”, BMC Genomics, 2006, 7, : 21.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
N. Hansmeier, T. C. Chao, J. Kalinowski, A. Pühler, and A. Tauch, “Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae”, PROTEOMICS, 2006, 6, 2465-2476.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598081
G. Bönemann, M. Stiens, A. Pühler, and A. Schlüter, “Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant”, ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2006, 50, 3075-3080.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
S. Schneiker-Bekel, V. A. P. M. dos Santos, D. Bartels, T. Bekel, M. Brecht, J. Buhrmester, T. N. Chernikova, R. Denaro, M. Ferrer, C. Gertler, et al., “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”, Nature Biotechnology, 2006, 24, 997-1004.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598803
S. Grabley, and A. Pühler, “BioPerspectives - From basic research to industrial production”, JOURNAL OF BIOTECHNOLOGY, 2006, 124, 1-3.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596821
W. Selbitschka, M. Keller, R. Miethling-Graff, U. Dresing, F. Schwieger, I. Krahn, I. Homann, T. Dammann-Kalinowski, A. Pühler, and C. C. Tebbe, “Long-term field release of bioluminescent Sinorhizobium meliloti strains to assess the influence of a recA mutation on the strains' survival”, MICROBIAL ECOLOGY, 2006, 52, 583-595.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597413
G. Gottschalk, W. Goebel, and A. Pühler, “Aspects of prokaryotic genome research”, JOURNAL OF BIOTECHNOLOGY, 2006, 126, 1-2.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
N. Hansmeier, A. Albersmeier, A. Tauch, T. Damberg, R. Ros, D. Anselmetti, A. Pühler, and J. Kalinowski, “The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032”, Microbiology, 2006, 152, 923-935.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
N. Hansmeier, T. C. Chao, A. Pühler, A. Tauch, and J. Kalinowski, “The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032”, PROTEOMICS, 2006, 6, 233-250.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598296
J. Nielsen, and A. Pühler, “Highlights from ECB12 - Bringing genomes to life”, JOURNAL OF BIOTECHNOLOGY, 2006, 124, 627-628.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599383
M. Stiens, S. Schneiker-Bekel, M. Keller, S. Kuhn, A. Pühler, and A. Schlüter, “Sequence analysis of the 144-kilobase accessory plasmid pSmeSM11a, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experimerit”, Appl Environ Microbiol, 2006, 72, 3662-3672.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600185
M. Gaillard, T. Vallaeys, F. - J. Vorhölter, M. Minoia, C. Werlen, V. Sentchilo, A. Pühler, and J. R. van der Meer, “The clc element of Pseudomonas sp strain B13, a genomic island with various catabolic properties”, JOURNAL OF BACTERIOLOGY, 2006, 188, 1999-2013.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
A. Tauch, E. Trost, T. Bekel, A. Goesmann, U. Ludewig, and A. Pühler, “Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System”, Biochemica, 2006, 4, 4-6.
PUB
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853
S. Mormann, A. Lömker, C. Rückert, L. Gaigalat, A. Tauch, A. Pühler, and J. Kalinowski, “Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway”, BMC Genomics, 2006, 7, : 205.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
M. Mahne, A. Tauch, A. Pühler, and J. Kalinowski, “The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins”, FEMS MICROBIOLOGY LETTERS, 2006, 259, 226-233.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
A. Krause, A. Ramakumar, D. Bartels, F. Battistoni, T. Bekel, J. Boch, M. Boehm, F. Friedrich, T. Hurek, L. Krause, et al., “Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72”, Nature Biotechnology, 2006, 24, 1385-1391.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
T. Hain, C. Steinweg, C. T. Kuenne, A. Billion, R. Ghai, S. S. Chatterjee, E. Domann, U. Kaerst, A. Goesmann, T. Bekel, et al., “Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes”, Journal of Bacteriology, 2006, 188, 8299-8302.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631957
L. Krause, N. N. Diaz, D. Bartels, R. A. Edwards, A. Pühler, F. Rohwer, F. Meyer, and J. Stoye, “Finding novel genes in bacterial communities isolated from the environment”, BIOINFORMATICS, 2006, 22, e281-e289.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2447862
A. Pühler, A. Becker, J. Buhrmester, T. - C. Chao, S. Rüberg, and S. Weidner, in Biological Nitrogen Fixation, Sustainable Agriculture and the Environment: Proceedings of the 14th International Nitrogen Fixation Congress (Eds.: Y.-P. Wang, M. Lin, Z.-X. Tian, C. Elmerich, W.E. Newton), Springer, 2005, p. 119-122.
PUB
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458
A. T. Hüser, C. Chassagnole, N. D. Lindley, M. Merkamm, A. Guyonvarch, V. Elisakova, M. Patek, J. Kalinowski, I. Brune, A. Pühler, et al., “Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71, 3255-3268.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
D. A. Rey, S. S. Nentwich, D. J. Koch, C. Rückert, A. Pühler, A. Tauch, and J. Kalinowski, “The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032”, MOLECULAR MICROBIOLOGY, 2005, 56, 871-887.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603291
S. G. Braun, A. Meyer, O. Olst, A. Pühler, and K. Niehaus, “Characterization of the Xanthomonas campestris pv. campestris lipopolysaccharide substructures essential for elicitation of an oxidative burst in tobacco cells”, Molecular Plant - Microbe Interactions, 2005, 18, 674-681.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604683
V. Fehlberg, M. F. Vieweg, E. M. N. Dohmann, N. Hohnjec, A. Pühler, A. M. Perlick, and H. Küster, “The promoter of the leghaemoglobin gene VfLb29: functional analysis and identification of modules necessary for its activation in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots”, JOURNAL OF EXPERIMENTAL BOTANY, 2005, 56, 799-806.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302
D. Bartels, S. Kespohl, S. Albaum, T. Drüke, A. Goesmann, J. Herold, O. Kaiser, A. Pühler, F. Pfeiffer, G. Raddatz, et al., “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”, Bioinformatics, 2005, 21, 853-859.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604328
R. Szczepanowski, S. Braun, V. Riedel, S. Schneiker-Bekel, I. Krahn, A. Pühler, and A. Schlüter, “The 120 592 bp lncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different anti biotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions”, MICROBIOLOGY-SGM, 2005, 151, 1095-1111.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1864013
T. Tennstedt, H. Heuer, E. M. Top, R. Szczepanowski, A. Pühler, and A. Schlüter, “Genomics of resistance plasmids isolated from wastewater treatment plants”, Plasmid, 2005, 53, 40-41.
PUB
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602311
A. Schlüter, H. Heuer, R. Szczepanowski, S. M. Poler, S. Schneiker-Bekel, A. Pühler, and E. M. Top, “Plasmid pB8 is closely related to the prototype IncP-1 beta plasmid R751 but transfers poorly to Escherichia coli and carries a new transposon encoding a small multidrug resistance efflux protein”, PLASMID, 2005, 54, 135-148.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
F. Thieme, R. Koebnik, T. Bekel, C. Berger, J. Boch, D. Buttner, C. Caldana, L. Gaigalat, A. Goesmann, S. Kay, et al., “Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence”, JOURNAL OF BACTERIOLOGY, 2005, 187, 7254-7266.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602933
A. Frenzel, K. Manthey, A. M. Perlick, F. Meyer, A. Pühler, H. Küster, and F. Krajinski, “Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific Medicago truncatula lectin genes”, Mol Plant-Microbe Interact, 2005, 18, 771-782.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602010
T. - C. Chao, J. Buhrmester, N. Hansmeier, A. Pühler, and S. Weidner, “Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71, 5969-5982.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601308
G. Reiss, H. Brückl, A. Hütten, J. Schotter, M. Brzeska, M. Panhorst, D. Sudfeld, A. Becker, P. - B. Kamp, A. Pühler, et al., “Magnetoresistive sensors and magnetic nanoparticles for biotechnology”, Journal of Materials Research, 2005, 20, 3294-3302.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771
C. Rückert, D. J. Koch, D. A. Rey, A. Albersmeier, S. Mormann, A. Pühler, and J. Kalinowski, “Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction”, BMC Genomics, 2005, 6, : 121.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017
D. J. Koch, C. Rückert, D. A. Rey, A. Mix, A. Pühler, and J. Kalinowski, “Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71, 6104-6114.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137
D. J. Koch, C. Rückert, A. Albersmeier, A. T. Hüser, A. Tauch, A. Pühler, and J. Kalinowski, “The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate”, Mol Microbiol, 2005, 58, 480-494.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604877
J. M. Risse, A. Pühler, and E. Flaschel, “Production of N-acetyl-phosphinothricin: A substance used for inducing male sterility in transgenic plants”, ENGINEERING IN LIFE SCIENCES, 2005, 5, 38-45.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603956
T. Tennstedt, R. Szczepanowski, I. Krahn, A. Pühler, and A. Schlüter, “Sequence of the 68,869 bp IncP-1 alpha plasmid pTB11 from a waste-water treatment plant reveals a highly conserved backbone, a Tn402-like integron and other transposable elements”, PLASMID, 2005, 53, 218-238.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604074
N. Hohnjec, M. E. Vieweg, A. Pühler, A. Becker, and H. Küster, “Overlaps in the transcriptional profiles of Medicago truncatula roots inoculated with two different Glomus fungi provide insights into the genetic program activated during arbuscular mycorrhiza”, Plant Physiol, 2005, 137, 1283-1301.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955
M. Silberbach, A. T. Hüser, J. Kalinowski, A. Pühler, B. Walter, R. Kramer, and A. Burkovski, “DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum”, JOURNAL OF BIOTECHNOLOGY, 2005, 119, 357-367.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
A. Tauch, O. Kaiser, T. Hain, A. Goesmann, B. Weisshaar, A. Albersmeier, T. Bekel, N. Bischoff, I. Brune, T. Chakraborty, et al., “Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora”, Journal of Bacteriology, 2005, 187, 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606
I. Brune, K. Brinkrolf, J. Kalinowski, A. Pühler, and A. Tauch, “The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences”, BMC Genomics, 2005, 6, : 86.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601922
C. Firnhaber, A. Pühler, and H. Küster, “EST sequencing and time course microarray hybridizations identify more than 700 Medicago truncatula genes with developmental expression regulation in flowers and pods”, Planta, 2005, 222, 269-283.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889
M. Silberbach, M. Schafer, A. T. Hüser, J. Kalinowski, A. Pühler, R. Kramer, and A. Burkovski, “Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71, 2391-2402.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687
H. Küster, N. Hohnjec, F. Krajinski, F. El Yahyaoui, K. Manthey, J. Gouzy, M. Dondrup, F. Meyer, J. Kalinowski, L. Brechenmacher, et al., “Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula”, JOURNAL OF BIOTECHNOLOGY, 2004, 108, 95-113.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839
A. C. McHardy, A. Pühler, J. Kalinowski, and F. Meyer, “Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'”, PROTEOMICS, 2004, 4, 46-58.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606270
M. Hartmann, A. Barsch, K. Niehaus, A. Pühler, A. Tauch, and J. Kalinowski, “The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum”, ARCHIVES OF MICROBIOLOGY, 2004, 182, 299-312.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
R. Szczepanowski, I. Krahn, B. Linke, A. Goesmann, A. Pühler, and A. Schlüter, “Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system”, Microbiology, 2004, 150, 3613-3630.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
A. C. McHardy, A. Goesmann, A. Pühler, and F. Meyer, “Development of joint application strategies for two microbial gene finders”, BIOINFORMATICS, 2004, 20, 1622-1631.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608345
A. Becker, H. Berges, E. Krol, C. Bruand, S. Rüberg, D. Capela, E. Lauber, E. Meilhoc, F. Ampe, F. J. de Bruijn, et al., “Global changes in gene expression in Sinorhizobium meliloti 1021 under microoxic and symbiotic conditions”, MOLECULAR PLANT-MICROBE INTERACTIONS, 2004, 17, 292-303.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606360
U. von Stockar, and A. Pühler, “Highlights from the ECB11: building bridges between biosciences and bioengineering”, JOURNAL OF BIOTECHNOLOGY, 2004, 113, 1-2.
PUB | DOI | WoS
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606500
A. Tauch, N. Bischoff, A. Pühler, and J. Kalinowski, “Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium”, PLASMID, 2004, 52, 102-118.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606644
M. Brzeska, M. Panhorst, P. - B. Kamp, J. Schotter, G. Reiss, A. Pühler, A. Becker, and H. Brückl, “Detection and manipulation of biomolecules by magnetic carriers”, JOURNAL OF BIOTECHNOLOGY, 2004, 112, 25-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607832
T. - C. Chao, A. Becker, J. Buhrmester, A. Pühler, and S. Weidner, “The Sinorhizobium meliloti fur gene regulates, with dependence on Mn(II), transcription of the sitABCD operon, encoding a metal-type transporter”, JOURNAL OF BACTERIOLOGY, 2004, 186, 3609-3620.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605648
H. Heuer, R. Szczepanowski, S. Schneiker-Bekel, A. Pühler, E. M. Top, and A. Schlüter, “The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1 beta group without any accessory genes”, Microbiology, 2004, 150, 3591-3599.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605701
I. Krahn, R. Szczepanowski, A. Pühler, and A. Schlüter, “Different molecular rearrangements in the integron of the IncP-1 beta resistance plasmid pB10 isolated from a wastewater treatment plant result in elevated beta-lactam resistance levels”, ARCHIVES OF MICROBIOLOGY, 2004, 182, 429-435.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606228
F. El Yahyaoui, H. Küster, B. Ben Amor, N. Hohnjec, A. Pühler, A. Becker, J. Gouzy, T. Vernie, C. Gough, A. Niebel, et al., “Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program(1[w])”, PLANT PHYSIOLOGY, 2004, 136, 3159-3176.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606475
K. Manthey, F. Krajinski, N. Hohnjec, C. Firnhaber, A. Pühler, A. M. Perlick, and H. Küster, “Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses”, Mol Plant-Microbe Interact, 2004, 17, 1063-1077.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606843
K. Schiene, S. Donath, M. Brecht, A. Pühler, and K. Niehaus, “A Rab-related small GTP binding protein is predominantly expressed in root nodules of Medicago sativa”, Molecular Genetics and Genomics, 2004, 272, 57-66.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773148
R. Ros, R. Eckel, F. W. Bartels, A. Sischka, B. Baumgarth, S. D. Wilking, A. Pühler, N. Sewald, A. Becker, and D. Anselmetti, “Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications”, Journal of Biotechnology, 2004, 112, 5-12.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130
N. Hansmeier, F. W. Bartels, R. Ros, D. Anselmetti, A. Tauch, A. Pühler, and J. Kalinowski, “Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy”, J Biotechnol, 2004, 112, 177-193.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608095
J. Schotter, P. - B. Kamp, A. Becker, A. Pühler, G. Reiss, and H. Brückl, “Comparison of a prototype magnetoresistive biosensor to standard fluorescent DNA detection”, BIOSENSORS & BIOELECTRONICS, 2004, 19, 1149-1156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608254
A. Pühler, M. Arlat, A. Becker, M. Gottfert, J. P. Morrissey, and F. O'Gara, “What can bacterial genome research teach us about bacteria-plant interactions?”, Current Opinion in Plant Biology, 2004, 7, 137-147.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608336
M. F. Vieweg, M. Fruhling, H. J. Quandt, U. Heim, H. Baumlein, A. Pühler, H. Küster, and A. M. Perlick, “The promoter of the Vicia faba L. leghemoglobin gene VfLb29 is specifically activated in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots from different legume and nonlegume plants”, Mol Plant Microbe Interact, 2004, 17, 62-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773125
H. Kleine, R. Wilke, C. Pelargus, K. Rott, A. Pühler, G. Reiss, R. Ros, and D. Anselmetti, “Absence of intrinsic electric conductivity in single dsDNA molecules”, Journal of Biotechnology, 2004, 112, 91-95.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286
A. Goesmann, B. Linke, O. Rupp, L. Krause, D. Bartels, M. Dondrup, A. C. McHardy, A. Wilke, A. Pühler, and F. Meyer, “Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 157-167.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609306
F. - J. Vorhölter, T. Thias, F. Meyer, T. Bekel, O. Kaiser, A. Pühler, and K. Niehaus, “Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition”, Journal of Biotechnology, 2003, 106, 193-202.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609647
A. Schlüter, H. Heuer, R. Szczepanowski, L. J. Forney, C. M. Thomas, A. Pühler, and E. M. Top, “The 64 508 bp IncP-1 beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1 beta group”, Microbiology, 2003, 149, 3139-3153.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610221
A. Pühler, and A. Tauch, “A new era in Corynebacterium glutamicum biotechnology”, JOURNAL OF BIOTECHNOLOGY, 2003, 104, 1-3.
PUB | DOI | WoS
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269
C. Rückert, A. Pühler, and J. Kalinowski, “Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation”, JOURNAL OF BIOTECHNOLOGY, 2003, 104, 213-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611452
S. Weidner, A. Pühler, and H. Küster, “Genomics insights into symbiotic nitrogen fixation”, CURRENT OPINION IN BIOTECHNOLOGY, 2003, 14, 200-205.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609247
A. Pühler, and W. Selbitschka, “Genome research on bacteria relevant for agriculture, environment and biotechnology”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 119-120.
PUB | DOI | WoS
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610193
N. Hohnjec, A. M. Perlick, A. Pühler, and H. Küster, “The Medicago truncatula sucrose synthase gene MtSucS1 is activated both in the infected region of root nodules and in the cortex of roots colonized by arbuscular mycorrhizal fungi”, Mol Plant Microbe Interact, 2003, 16, 903-915.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610484
T. Tennstedt, R. Szczepanowski, S. Braun, A. Pühler, and A. Schluter, “Occurrence of integron-associated resistance gene cassettes located on antibiotic resistance plasmids isolated from a wastewater treatment plant”, FEMS MICROBIOLOGY ECOLOGY, 2003, 45, 239-252.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014
S. Brand, K. Niehaus, A. Pühler, and J. Kalinowski, “Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope”, Archives of Microbiology, 2003, 180, 33-44.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260
M. Hartmann, A. Tauch, L. Eggeling, B. Bathe, B. Mockel, A. Pühler, and J. Kalinowski, “Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum”, J Biotechnol, 2003, 104, 199-211.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
O. Kaiser, D. Bartels, T. Bekel, A. Goesmann, S. Kespohl, A. Pühler, and F. Meyer, “Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 121-133.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
M. Dondrup, A. Goesmann, D. Bartels, J. Kalinowski, L. Krause, B. Linke, O. Rupp, A. Sczyrba, A. Pühler, and F. Meyer, “EMMA: a platform for consistent storage and efficient analysis of microarray data”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272
A. Wilke, C. Rückert, D. Bartels, M. Dondrup, A. Goesmann, A. T. Hüser, S. Kespohl, B. Linke, M. Mahne, A. McHardy, et al., “Bioinformatics support for high-throughput proteomics”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 147-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609328
S. Rüberg, Z. X. Tian, E. Krol, B. Linke, F. Meyer, Y. P. Wang, A. Pühler, S. Weidner, and A. Becker, “Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 255-268.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274
A. C. McHardy, A. Tauch, C. Rückert, A. Pühler, and J. Kalinowski, “Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum”, J Biotechnol, 2003, 104, 229-240.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324
A. Tauch, A. Schlüter, N. Bischoff, A. Goesmann, F. Meyer, and A. Pühler, “The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family”, Molecular Genetics and Genomics, 2003, 268, 570-584.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
F. Meyer, A. Goesmann, A. C. McHardy, D. Bartels, T. Bekel, J. Clausen, J. Kalinowski, B. Linke, O. Rupp, R. Giegerich, et al., “GenDB - an open source genome annotation system for prokaryote genomes”, Nucleic Acids Research, 2003, 31, 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
A. Tauch, A. Pühler, J. Kalinowski, and G. Thierbach, “Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics”, JOURNAL OF BIOTECHNOLOGY, 2003, 104, 27-40.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
D. A. Rey, A. Pühler, and J. Kalinowski, “The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum”, JOURNAL OF BIOTECHNOLOGY, 2003, 103, 51-65.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609315
P. N. Golyshin, V. A. Martins Dos Santos, O. Kaiser, M. Ferrer, Y. S. Sabirova, H. Lünsdorf, T. N. Chernikova, O. V. Golyshina, M. M. Yakimov, A. Pühler, et al., “Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems”, Journal of Biotechnology, 2003, 106, 215-220.
PUB | DOI | WoS | PubMed | Europe PMC
 

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