Please note that PUB no longer supports Internet Explorer versions 8 or 9 (or earlier).

We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.

544 Publikationen

2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S. H., Höner zu Siederdissen, C., Bort, J. A. H., Wieser, M., et al. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology 153, 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968039
Torres Tejerizo, G., Florencia Del Papa, M., Eugenia Soria-Diaz, M., Draghi, W., Lozano, M., de los Angeles Giusti, M., Manyani, H., Megias, M., Gil Serrano, A., Pühler, A., et al. (2011). The Nodulation of Alfalfa by the Acid-Tolerant Rhizobium sp. Strain LPU83 Does Not Require Sulfated Forms of Lipochitooligosaccharide Nodulation Signals. Journal of Bacteriology 193, 30-39.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400
Kalinowski, J., Rückert, C., Szczepanowski, R., and Pühler, A. (2010). Advanced Genomics and Transcriptomics of Industrial Microorganisms. Chemie Ingenieur Technik 82, 1518-1519.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1903875
de Lucena, D. K., Pühler, A., and Weidner, S. (2010). The role of sigma factor RpoH1 in the pH stress response of Sinorhizobium meliloti. BMC Microbiology 10, 256.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275
Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., Arnold, W., Bekel, T., Blom, J., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics 11:91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
Steinweg, C., Kuenne, C. T., Billion, A., Mraheil, M. A., Domann, E., Ghai, R., Barbuddhe, S. B., Kaerst, U., Goesmann, A., Pühler, A., et al. (2010). Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology 192, 1473-1474.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
Gölzhäuser, A., Nattkemper, T. W., Niehaus, K., Pühler, A., and Sauer, M. (2010). BioImaging: Contributions from biology, physics and informatics. Journal of Biotechnology 149, 227-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635309
Hellweg, C., Pühler, A., and Weidner, S. (2009). The time course of the transcriptomic response of Sinorhizobium meliloti 1021 following a shift to acidic pH. BMC MICROBIOLOGY 9, 37.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., and Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10:154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635951
Nentwich, S. S., Brinkrolf, K., Gaigalat, L., Hueser, A. T., Rey, D. A., Mohrbach, T., Marin, K., Pühler, A., Tauch, A., and Kalinowski, J. (2009). Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032. MICROBIOLOGY 155, 150-164.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., Fricke, W. F., Martinez-Arias, R., Bartels, D., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY 11, 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634443
Pühler, A., and Selbitschka, W. (2009). Functional genome research on bacteria relevant for agriculture, environment and biotechnology. JOURNAL OF BIOTECHNOLOGY 140, 1-2.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., Rüberg, S., Runte, K., Schroeder, B. K., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY 140, 45-50.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., Kuester, H., Linke, B., Mertens, D., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10:50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591546
Szczepanowski, R., Linke, B., Krahn, I., Gartemann, K. - H., Guetzkow, T., Eichler, W., Pühler, A., and Schlueter, A. (2009). Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics. MICROBIOLOGY 155, 2306-2319.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591844
Kroeber, M., Bekel, T., Diaz, N. N., Goesmann, A., Jaenicke, S., Krause, L., Miller, D., Runte, K. J., Viehoever, P., Pühler, A., et al. (2009). Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. JOURNAL OF BIOTECHNOLOGY 142, 38-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1633812
Jochmann, N., Kurze, A. - K., Czaja, L. F., Brinkrolf, K., Brune, I., Hueser, A. T., Hansmeier, N., Pühler, A., Borovok, I., and Tauch, A. (2009). Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays. MICROBIOLOGY 155, 1459-1477.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., Rupp, O., Zakrzewski, M., Pühler, A., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292
Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., Bartels, D., Buhrmester, J., Choudhuri, J. V., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics 9, 449.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
Vorhölter, F. - J., Schneiker-Bekel, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., Patschkowski, T., Rückert, C., Schmid, J., et al. (2008). The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology 134, 33-45.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078
Brinkrolf, K., Ploeger, S., Solle, S., Brune, I., Nentwich, S. S., Hueser, A. T., Kalinowski, J., Pühler, A., and Tauch, A. (2008). The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences. MICROBIOLOGY 154, 1068-1081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585980
Schlueter, A., Krause, L., Szczepanowski, R., Goesmann, A., and Pühler, A. (2008). Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant. Journal of Biotechnology 136, 65-76.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592318
Meschini, E. P., Blanco, F. A., Zanetti, M. E., Beker, M. P., Küster, H., Pühler, A., and Aguilar, O. M. (2008). Host genes involved in nodulation preference in common bean (Phaseolus vulgaris)-Rhizobium etli symbiosis revealed - by suppressive subtractive hybridization. MOLECULAR PLANT-MICROBE INTERACTIONS 21, 459-468.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560
Rückert, C., Milse, J., Albersmeier, A., Koch, D. J., Pühler, A., and Kalinowski, J. (2008). The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules. BMC GENOMICS 9, 483.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585914
Pühler, A., and Selbitschka, W. (2008). Genome research in the light of ultrafast sequencing technologies. JOURNAL OF BIOTECHNOLOGY 136, 1-2.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585969
Szczepanowski, R., Bekel, T., Goesmann, A., Krause, L., Kroemeke, H., Kaiser, O., Eichler, W., Pühler, A., and Schlueter, A. (2008). Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology. JOURNAL OF BIOTECHNOLOGY 136, 54-64.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592210
Jungwirth, B., Emer, D., Brune, I., Hansmeier, N., Pühler, A., Eikmanns, B. J., and Tauch, A. (2008). Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR. FEMS MICROBIOLOGY LETTERS 281, 190-197.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586869
Serrania, J., Vorhölter, F. - J., Niehaus, K., Pühler, A., and Becker, A. (2008). Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data. Journal of Biotechnology 135, 309-317.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K. J., Schlüter, A., Stoye, J., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136, 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586719
Kohl, T., Baumbach, J., Jungwirth, B., Pühler, A., and Tauch, A. (2008). The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator. JOURNAL OF BIOTECHNOLOGY 135, 340-350.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
Stiens, M., Becker, A., Bekel, T., Gödde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., Selbitschka, W., Weidner, S., Schlüter, A., et al. (2008). Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology 136, 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
Schlüter, A., Bekel, T., Diaz, N. N., Dondrup, M., Eichenlaub, R., Gartemann, K. - H., Krahn, I., Krause, L., Kroemeke, H., Kruse, O., et al. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology 136, 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., Bekel, T., Brinkrolf, K., Brune, I., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology 136, 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345
Gartemann, K. - H., Abt, B., Bekel, T., Burger, A., Engemann, J., Fluegel, M., Gaigalat, L., Goesmann, A., Graefen, I., Kalinowski, J., et al. (2008). The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY 190, 2138-2149.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., Blom, J., Brinkrolf, K., Brune, I., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology 136, 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631126
Kuhn, S., Stiens, M., Pühler, A., and Schlüter, A. (2008). Prevalence of pSmeSM11a-like plasmids in indigenous Sinorhizobium meliloti strains isolated in the course of a field release experiment with genetically modified S-meliloti strains. FEMS MICROBIOLOGY ECOLOGY 63, 118-131.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., and Beutin, L. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity 76, 5466-5477.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2914794
Schotter, J., Panhorst, M., Brzeska, M., Kamp, P. - B., Becker, A., Pühler, A., Reiss, G., and Brückl, H. (2007). “Molecular Detection with Magnetic Labels and Magnetoresistive Sensors” in Nanoscale Devices - Fundamentals and Applications, Gross, R., Sidorenko, A., and Tagirov, L. eds. NATO Science Series, vol. 233, (Dordrecht: Springer Netherlands), 35-46.
PUB | DOI
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1, 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S., Bode, E., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25, 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595908
Szczepanowski, R., Krahn, I., Bohn, N., Pühler, A., and Schlueter, A. (2007). Novel macrolide resistance module carried by the IncP-1 beta resistance plasmid pRSB111, isolated from a wastewater treatment plant. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 51, 673-678.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595939
Pühler, A., and Strack, D. (2007). Molecular basics of mycorrhizal symbioses. PHYTOCHEMISTRY 68, 6-7.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune, I., Jochmann, N., Brinkrolf, K., Hueser, A. T., Gerstmeir, R., Eikmanns, B. J., Kalinowski, J., Pühler, A., and Tauch, A. (2007). The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum. JOURNAL OF BACTERIOLOGY 189, 2720-2733.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier, N., Chao, T. - C., Daschkey, S., Muesken, M., Kalinowski, J., Pühler, A., and Tauch, A. (2007). A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411. PROTEOMICS 7, 1076-1096.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631103
Rinas, U., and Pühler, A. (2007). In memoriam: Wolf-Dieter Deckwer - Merging process engineering and systems biology. JOURNAL OF BIOTECHNOLOGY 132, 341.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593538
Schlüter, A., Szczepanowski, R., Pühler, A., and Top, E. M. (2007). Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. FEMS MICROBIOLOGY REVIEWS 31, 449-477.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst, D., Larisch, C., Hueser, A. T., Tauch, A., Pühler, A., and Kalinowski, J. (2007). The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes. JOURNAL OF BACTERIOLOGY 189, 4696-4707.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593746
Stiens, M., Schneiker-Bekel, S., Pühler, A., and Schlüter, A. (2007). Sequence analysis of the 181-kb accessory plasmid pSmeSM11b, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment. FEMS MICROBIOLOGY LETTERS 271, 297-309.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595014
Schlüter, A., Szczepanowski, R., Kurz, N., Schneiker-Bekel, S., Krahn, I., and Pühler, A. (2007). Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73, 1952-1960.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596137
Del Papa, M. F., Pistorio, M., Draghi, W. O., Lozano, M. J., Giusti, M. A., Medina, C., van Dillewijn, P., Martinez-Abarca, F., Flores, B. M., Ruiz-Sainz, J. E., et al. (2007). Identification and characterization of a nodH ortholog from the alfalfa-nodulating Or191-like rhizobia. Molecular Plant - Microbe Interactions 20, 138-145.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345
Krause, L., McHardy, A. C., Nattkemper, T. W., Pühler, A., Stoye, J., and Meyer, F. (2007). GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research 35, 540-549.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A. M., Bekel, T., Dondrup, M., Henckel, K., Goesmann, A., et al. (2007). Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry 68, 19-32.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727
Gaigalat, L., Schlüter, J. - P., Hartmann, M., Mormann, S., Tauch, A., Pühler, A., and Kalinowski, J. (2007). The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum. BMC Molecular Biology 8, 104.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593996
Sewald, N., and Pühler, A. (2007). Molecular systems biology. JOURNAL OF BIOTECHNOLOGY 129, 171-172.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946125
Schlüter, A., Krahn, I., Kollin, F., Bonemann, G., Stiens, M., Szczepanowski, R., Schneiker-Bekel, S., and Pühler, A. (2007). IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes. Appl Environ Microbiol 73, 6345-6350.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune, I., Becker, A., Paarmann, D., Albersmeier, A., Kalinowski, J., Pühler, A., and Tauch, A. (2006). Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression. J Biotechnol 127, 21-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628
Brune, I., Werner, H., Hüser, A. T., Kalinowski, J., Pühler, A., and Tauch, A. (2006). The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum. BMC Genomics 7:21.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier, N., Chao, T. C., Kalinowski, J., Pühler, A., and Tauch, A. (2006). Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae. PROTEOMICS 6, 2465-2476.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598081
Bönemann, G., Stiens, M., Pühler, A., and Schlüter, A. (2006). Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 50, 3075-3080.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
Schneiker-Bekel, S., dos Santos, V. A. P. M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., et al. (2006). Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology 24, 997-1004.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598803
Grabley, S., and Pühler, A. (2006). BioPerspectives - From basic research to industrial production. JOURNAL OF BIOTECHNOLOGY 124, 1-3.
PUB | DOI | WoS
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596821
Selbitschka, W., Keller, M., Miethling-Graff, R., Dresing, U., Schwieger, F., Krahn, I., Homann, I., Dammann-Kalinowski, T., Pühler, A., and Tebbe, C. C. (2006). Long-term field release of bioluminescent Sinorhizobium meliloti strains to assess the influence of a recA mutation on the strains' survival. MICROBIAL ECOLOGY 52, 583-595.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597413
Gottschalk, G., Goebel, W., and Pühler, A. (2006). Aspects of prokaryotic genome research. JOURNAL OF BIOTECHNOLOGY 126, 1-2.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
Hansmeier, N., Chao, T. C., Pühler, A., Tauch, A., and Kalinowski, J. (2006). The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032. PROTEOMICS 6, 233-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
Hansmeier, N., Albersmeier, A., Tauch, A., Damberg, T., Ros, R., Anselmetti, D., Pühler, A., and Kalinowski, J. (2006). The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032. Microbiology 152, 923-935.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600185
Gaillard, M., Vallaeys, T., Vorhölter, F. - J., Minoia, M., Werlen, C., Sentchilo, V., Pühler, A., and van der Meer, J. R. (2006). The clc element of Pseudomonas sp strain B13, a genomic island with various catabolic properties. JOURNAL OF BACTERIOLOGY 188, 1999-2013.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598296
Nielsen, J., and Pühler, A. (2006). Highlights from ECB12 - Bringing genomes to life. JOURNAL OF BIOTECHNOLOGY 124, 627-628.
PUB | DOI | WoS
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599383
Stiens, M., Schneiker-Bekel, S., Keller, M., Kuhn, S., Pühler, A., and Schlüter, A. (2006). Sequence analysis of the 144-kilobase accessory plasmid pSmeSM11a, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experimerit. Appl Environ Microbiol 72, 3662-3672.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
Tauch, A., Trost, E., Bekel, T., Goesmann, A., Ludewig, U., and Pühler, A. (2006). Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica 4, 4-6.
PUB
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853
Mormann, S., Lömker, A., Rückert, C., Gaigalat, L., Tauch, A., Pühler, A., and Kalinowski, J. (2006). Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway. BMC Genomics 7:205.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
Mahne, M., Tauch, A., Pühler, A., and Kalinowski, J. (2006). The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins. FEMS MICROBIOLOGY LETTERS 259, 226-233.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Boehm, M., Friedrich, F., Hurek, T., Krause, L., et al. (2006). Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology 24, 1385-1391.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
Hain, T., Steinweg, C., Kuenne, C. T., Billion, A., Ghai, R., Chatterjee, S. S., Domann, E., Kaerst, U., Goesmann, A., Bekel, T., et al. (2006). Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology 188, 8299-8302.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631957
Krause, L., Diaz, N. N., Bartels, D., Edwards, R. A., Pühler, A., Rohwer, F., Meyer, F., and Stoye, J. (2006). Finding novel genes in bacterial communities isolated from the environment. BIOINFORMATICS 22, e281-e289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2447862
Pühler, A., Becker, A., Buhrmester, J., Chao, T. - C., Rüberg, S., and Weidner, S. (2005). “What can bacterial genome research teach us about iron uptake in Sinorhizobium meliloti?” in Biological Nitrogen Fixation, Sustainable Agriculture and the Environment: Proceedings of the 14th International Nitrogen Fixation Congress, Wang, Y. - P., Lin, M., Tian, Z. - X., Elmerich, C., and Newton, W. E. eds. Current Plant Science and Biotechnology in Agriculture, 41 (Springer), 119-122.
PUB
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458
Hüser, A. T., Chassagnole, C., Lindley, N. D., Merkamm, M., Guyonvarch, A., Elisakova, V., Patek, M., Kalinowski, J., Brune, I., Pühler, A., et al. (2005). Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 3255-3268.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
Rey, D. A., Nentwich, S. S., Koch, D. J., Rückert, C., Pühler, A., Tauch, A., and Kalinowski, J. (2005). The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032. MOLECULAR MICROBIOLOGY 56, 871-887.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603291
Braun, S. G., Meyer, A., Olst, O., Pühler, A., and Niehaus, K. (2005). Characterization of the Xanthomonas campestris pv. campestris lipopolysaccharide substructures essential for elicitation of an oxidative burst in tobacco cells. Molecular Plant - Microbe Interactions 18, 674-681.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604683
Fehlberg, V., Vieweg, M. F., Dohmann, E. M. N., Hohnjec, N., Pühler, A., Perlick, A. M., and Küster, H. (2005). The promoter of the leghaemoglobin gene VfLb29: functional analysis and identification of modules necessary for its activation in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots. JOURNAL OF EXPERIMENTAL BOTANY 56, 799-806.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21, 853-859.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604328
Szczepanowski, R., Braun, S., Riedel, V., Schneiker-Bekel, S., Krahn, I., Pühler, A., and Schlüter, A. (2005). The 120 592 bp lncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different anti biotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions. MICROBIOLOGY-SGM 151, 1095-1111.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1864013
Tennstedt, T., Heuer, H., Top, E. M., Szczepanowski, R., Pühler, A., and Schlüter, A. (2005). Genomics of resistance plasmids isolated from wastewater treatment plants. Plasmid 53, 40-41.
PUB
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602311
Schlüter, A., Heuer, H., Szczepanowski, R., Poler, S. M., Schneiker-Bekel, S., Pühler, A., and Top, E. M. (2005). Plasmid pB8 is closely related to the prototype IncP-1 beta plasmid R751 but transfers poorly to Escherichia coli and carries a new transposon encoding a small multidrug resistance efflux protein. PLASMID 54, 135-148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Buttner, D., Caldana, C., Gaigalat, L., Goesmann, A., Kay, S., et al. (2005). Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY 187, 7254-7266.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602933
Frenzel, A., Manthey, K., Perlick, A. M., Meyer, F., Pühler, A., Küster, H., and Krajinski, F. (2005). Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific Medicago truncatula lectin genes. Mol Plant-Microbe Interact 18, 771-782.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601308
Reiss, G., Brückl, H., Hütten, A., Schotter, J., Brzeska, M., Panhorst, M., Sudfeld, D., Becker, A., Kamp, P. - B., Pühler, A., et al. (2005). Magnetoresistive sensors and magnetic nanoparticles for biotechnology. Journal of Materials Research 20, 3294-3302.
PUB | DOI | WoS
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771
Rückert, C., Koch, D. J., Rey, D. A., Albersmeier, A., Mormann, S., Pühler, A., and Kalinowski, J. (2005). Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction. BMC Genomics 6:121.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602010
Chao, T. - C., Buhrmester, J., Hansmeier, N., Pühler, A., and Weidner, S. (2005). Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 5969-5982.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017
Koch, D. J., Rückert, C., Rey, D. A., Mix, A., Pühler, A., and Kalinowski, J. (2005). Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 6104-6114.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137
Koch, D. J., Rückert, C., Albersmeier, A., Hüser, A. T., Tauch, A., Pühler, A., and Kalinowski, J. (2005). The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate. Mol Microbiol 58, 480-494.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604877
Risse, J. M., Pühler, A., and Flaschel, E. (2005). Production of N-acetyl-phosphinothricin: A substance used for inducing male sterility in transgenic plants. ENGINEERING IN LIFE SCIENCES 5, 38-45.
PUB | DOI | WoS
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603956
Tennstedt, T., Szczepanowski, R., Krahn, I., Pühler, A., and Schlüter, A. (2005). Sequence of the 68,869 bp IncP-1 alpha plasmid pTB11 from a waste-water treatment plant reveals a highly conserved backbone, a Tn402-like integron and other transposable elements. PLASMID 53, 218-238.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1604074
Hohnjec, N., Vieweg, M. E., Pühler, A., Becker, A., and Küster, H. (2005). Overlaps in the transcriptional profiles of Medicago truncatula roots inoculated with two different Glomus fungi provide insights into the genetic program activated during arbuscular mycorrhiza. Plant Physiol 137, 1283-1301.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., Bischoff, N., Brune, I., Chakraborty, T., et al. (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology 187, 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955
Silberbach, M., Hüser, A. T., Kalinowski, J., Pühler, A., Walter, B., Kramer, R., and Burkovski, A. (2005). DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum. JOURNAL OF BIOTECHNOLOGY 119, 357-367.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606
Brune, I., Brinkrolf, K., Kalinowski, J., Pühler, A., and Tauch, A. (2005). The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences. BMC Genomics 6:86.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889
Silberbach, M., Schafer, M., Hüser, A. T., Kalinowski, J., Pühler, A., Kramer, R., and Burkovski, A. (2005). Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 2391-2402.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601922
Firnhaber, C., Pühler, A., and Küster, H. (2005). EST sequencing and time course microarray hybridizations identify more than 700 Medicago truncatula genes with developmental expression regulation in flowers and pods. Planta 222, 269-283.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687
Küster, H., Hohnjec, N., Krajinski, F., El Yahyaoui, F., Manthey, K., Gouzy, J., Dondrup, M., Meyer, F., Kalinowski, J., Brechenmacher, L., et al. (2004). Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula. JOURNAL OF BIOTECHNOLOGY 108, 95-113.
PUB | DOI | WoS | PubMed | Europe PMC
 
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839
McHardy, A. C., Pühler, A., Kalinowski, J., and Meyer, F. (2004). Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'. PROTEOMICS 4, 46-58.
PUB | DOI | WoS | PubMed | Europe PMC
 

Filter und Suchbegriffe

author=21937

Suche

Publikationen filtern

Darstellung / Sortierung

Zitationsstil: frontiers

Export / Einbettung