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545 Publikationen

2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207
Eikmeyer, F. G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., Mayrhuber, E., et al. (2013). Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging. Journal of Biotechnology, 167(3), 334-343. doi:10.1016/j.jbiotec.2013.07.021
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557080
Bonnin, R. A., Poirel, L., Nordmann, P., Eikmeyer, F. G., Wibberg, D., Pühler, A., & Schlüter, A. (2013). Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa. Journal of Antimicrobial Chemotherapy, 68(5), 1060-1065. doi:10.1093/jac/dks526
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, P., Wendler, S., Neshat, A., Eirich, C., Rückert, C., Klein, A., Wehmeier, U. F., et al. (2013). Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology, 167(2), 166-177. doi:10.1016/j.jbiotec.2012.10.019
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, V. M., Acera, F., Igeño, M. I., Wibberg, D., Roldán, M. D., Sáez, L. P., Hennig, M., et al. (2013). Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology, 15(1), 253-270. doi:10.1111/j.1462-2920.2012.02875.x
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
Plassmeier, J., Busche, T., Molck, S., Persicke, M., Pühler, A., Rückert, C., & Kalinowski, J. (2013). A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways. Journal of Biotechnology, 163(2), 225-232. doi:10.1016/j.jbiotec.2012.08.009
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2546244
Wibberg, D., Szczepanowski, R., Eikmeyer, F. G., Pühler, A., & Schlüter, A. (2013). The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates. Plasmid, 69(2), 127-137. doi:10.1016/j.plasmid.2012.11.001
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., et al. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology, 167(2), 156-165. doi:10.1016/j.jbiotec.2012.09.013
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553286
Jungbauer, A., Scheper, T., & Pühler, A. (2012). Current research and future perspectives of applied biotechnology. Journal of Biotechnology, 162(4), 355. doi:10.1016/j.jbiotec.2012.11.004
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849
Weidner, S., Becker, A., Bonilla, I., Jaenicke, S., Lloret, J., Margaret, I., Pühler, A., et al. (2012). Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103. Journal of Bacteriology, 194(6), 1617-1618. doi:10.1128/JB.06729-11
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., et al. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology, 158(4), 248-258. doi:10.1016/j.jbiotec.2012.01.020
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2537690 OA
Vorhölter, F. - J., Wiggerich, H. - G., Scheidle, H., Sidhu, V. K., Mrozek, K., Küster, H., Pühler, A., et al. (2012). Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases. BMC Microbiology, 12(1), 239. doi:10.1186/1471-2180-12-239
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279
Eikmeyer, F. G., Hadiati, A., Szczepanowski, R., Wibberg, D., Schneiker-Bekel, S., Rogers, L. M., Brown, C. B., et al. (2012). The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution. Plasmid, 68(1), 13-24. doi:10.1016/j.plasmid.2012.01.011
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology, 161(2), 153-166. doi:10.1016/j.jbiotec.2012.03.007
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., et al. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology, 79(3), 785-799. doi:10.1111/j.1574-6941.2011.01265.x
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060 OA
Schwientek, P., Szczepanowski, R., Rückert, C., Kalinowski, J., Klein, A., Selber, K., Wehmeier, U. F., et al. (2012). The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics, 13(1), 112. doi:10.1186/1471-2164-13-112
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501307
Pietruszka, J., Pühler, A., & Schembecker, G. (2012). Research on industrial biotechnology within the CLIB-Graduate Cluster - Part I. Journal of Biotechnology, 159(3), 121-122. doi:10.1016/j.jbiotec.2012.04.012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
Meleady, P., Hoffrogge, R., Henry, M., Rupp, O., Bort, J. H., Clarke, C., Brinkrolf, K., et al. (2012). Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics. Biotechnology and Bioengineering, 109(6), 1386-1394. doi:10.1002/bit.24476
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology, 158(3), 151-155. doi:10.1016/j.jbiotec.2012.01.019
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501774
Wendisch, V. F., & Pühler, A. (2012). Microbes and industrial biotechnology. Journal of Biotechnology, 158(4), 157-158. doi:10.1016/j.jbiotec.2012.03.019
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
Hain, T., Ghai, R., Billion, A., Kuenne, C. T., Steinweg, C., Izar, B., Mohamed, W., et al. (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics, 13(1), 144. doi:10.1186/1471-2164-13-144
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., et al. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell, 11(12), 1582-1583. doi:10.1128/EC.00258-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269 OA
Strobel, T., Al-Dilaimi, A., Blom, J., Gessner, A., Kalinowski, J., Luzhetska, M., Pühler, A., et al. (2012). Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae. BMC Genomics, 13(1), 465. doi:10.1186/1471-2164-13-465
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
Schork, S., Schlüter, A., Blom, J., Schneiker-Bekel, S., Pühler, A., Goesmann, A., Frosch, M., et al. (2012). Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology, 194(18), 5144-5145. doi:10.1128/JB.01099-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Maus, I., Wibberg, D., Stantscheff, R., Eikmeyer, F. G., Seffner, A., Boelter, J., Szczepanowski, R., et al. (2012). Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology, 194(19), 5487-5488. doi:10.1128/JB.01292-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513297
Pauling, J., Rottger, R., Neuner, A., Salgado, H., Collado-Vides, J., Kalaghatgi, P., Azevedo, V., et al. (2012). On the trail of EHEC/EAEC-unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria. Integrative Biology, 4(7), 728-733. doi:10.1039/c2ib00132b
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
Schwientek, P., Szczepanowski, R., Rückert, C., Stoye, J., & Pühler, A. (2011). Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology. Journal of Biotechnology, 155(1), 68-77. doi:10.1016/j.jbiotec.2011.04.010
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2011 | Zeitschriftenaufsatz | PUB-ID: 2401477
Mattiasson, B., & Pühler, A. (2011). Towards sustainable biotechnology. Journal of Biotechnology, 152(4), 113. doi:10.1016/j.jbiotec.2011.03.018
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., & Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters, 323(1), 52-60. doi:10.1111/j.1574-6968.2011.02352.x
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology, 155(1), 50-62. doi:10.1016/j.jbiotec.2011.01.010
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology, 154(4), 312-320. doi:10.1016/j.jbiotec.2011.04.014
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology, 156(3), 227-235. doi:10.1016/j.jbiotec.2011.09.014
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
Persicke, M., Plassmeier, J., Neuweger, H., Rückert, C., Pühler, A., & Kalinowski, J. (2011). Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites. Journal of Biotechnology, 154(2-3), 171-178. doi:10.1016/j.jbiotec.2010.08.016
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
Borriss, R., Chen, X. - H., Rückert, C., Blom, J., Becker, A., Baumgarth, B., Fan, B., et al. (2011). Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons. Int J Syst Evol Microbiol, 61(8), 1786-1801. doi:10.1099/ijs.0.023267-0
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326481
Mayer, L., Vendruscolo, C. T., da Silva, W. P., Vorhölter, F. - J., Becker, A., & Pühler, A. (2011). Insights into the genome of the xanthan-producing phytopathogen Xanthomonas arboricola pv. pruni 109 by comparative genomic hybridization. Journal of Biotechnology, 155(1), 40-49. doi:10.1016/j.jbiotec.2011.04.012
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808
Plassmeier, J., Persicke, M., Pühler, A., Sterthoff, C., Rückert, C., & Kalinowski, J. (2011). Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicum. Journal of Biotechnology, 159(1-2), 1-11. doi:10.1016/j.jbiotec.2011.09.009
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings, 5(Suppl. 8), P6. doi:10.1186/1753-6561-5-S8-P6
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404874
Schatschneider, S., Vorhölter, F. - J., Rückert, C., Becker, A., Eisenreich, W., Pühler, A., & Niehaus, K. (2011). Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling. Molecular Genetics and Genomics, 286(3-4), 247-259. doi:10.1007/s00438-011-0639-7
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A., & Schlüter, A. (2011). Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In F. J. de Bruijn (Ed.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (pp. 403-414). Wiley-Blackwell. doi:10.1002/9781118010549.ch39
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317680
Zhou, L., Vorhölter, F. - J., He, Y. - Q., Jiang, B. - L., Tang, J. - L., Xu, Y., Pühler, A., et al. (2011). Gene discovery by genome-wide CDS re-prediction and microarray-based transcriptional analysis in phytopathogen Xanthomonas campestris. BMC Genomics, 12(1), 359. doi:10.1186/1471-2164-12-359
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2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., et al. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology, 155(1), 20-33. doi:10.1016/j.jbiotec.2010.12.018
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K. - H., Jünemann, S., et al. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1), e14519. doi:10.1371/journal.pone.0014519
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S. H., et al. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology, 153(1-2), 62-75. doi:10.1016/j.jbiotec.2011.02.011
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968039
Torres Tejerizo, G., Florencia Del Papa, M., Eugenia Soria-Diaz, M., Draghi, W., Lozano, M., de los Angeles Giusti, M., Manyani, H., et al. (2011). The Nodulation of Alfalfa by the Acid-Tolerant Rhizobium sp. Strain LPU83 Does Not Require Sulfated Forms of Lipochitooligosaccharide Nodulation Signals. Journal of Bacteriology, 193(1), 30-39. doi:10.1128/JB.01009-10
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400
Kalinowski, J., Rückert, C., Szczepanowski, R., & Pühler, A. (2010). Advanced Genomics and Transcriptomics of Industrial Microorganisms. Chemie Ingenieur Technik, 82(9), 1518-1519. doi:10.1002/cite.201050335
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1903875 OA
de Lucena, D. K., Pühler, A., & Weidner, S. (2010). The role of sigma factor RpoH1 in the pH stress response of Sinorhizobium meliloti. BMC Microbiology, 10(1), 256. doi:10.1186/1471-2180-10-256
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275 OA
Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics, 11(1), 91. doi:10.1186/1471-2164-11-91
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
Steinweg, C., Kuenne, C. T., Billion, A., Mraheil, M. A., Domann, E., Ghai, R., Barbuddhe, S. B., et al. (2010). Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology, 192(5), 1473-1474. doi:10.1128/JB.01415-09
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
Gölzhäuser, A., Nattkemper, T. W., Niehaus, K., Pühler, A., & Sauer, M. (2010). BioImaging: Contributions from biology, physics and informatics. Journal of Biotechnology, 149(4), 227-228. doi:10.1016/j.jbiotec.2010.08.015
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635309 OA
Hellweg, C., Pühler, A., & Weidner, S. (2009). The time course of the transcriptomic response of Sinorhizobium meliloti 1021 following a shift to acidic pH. BMC MICROBIOLOGY, 9(1), 37. doi:10.1186/1471-2180-9-37
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., & Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics, 10(1), 154. doi:10.1186/1471-2105-10-154
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635951
Nentwich, S. S., Brinkrolf, K., Gaigalat, L., Hueser, A. T., Rey, D. A., Mohrbach, T., Marin, K., et al. (2009). Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032. MICROBIOLOGY, 155(1), 150-164. doi:10.1099/mic.0.020388-0
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY, 11(5), 1038-1055. doi:10.1111/j.1462-2920.2008.01825.x
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1), 50. doi:10.1186/1471-2105-10-50
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634443
Pühler, A., & Selbitschka, W. (2009). Functional genome research on bacteria relevant for agriculture, environment and biotechnology. JOURNAL OF BIOTECHNOLOGY, 140(1-2), 1-2. doi:10.1016/j.jbiotec.2009.02.012
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY, 140(1-2), 45-50. doi:10.1016/j.jbiotec.2008.11.006
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591546
Szczepanowski, R., Linke, B., Krahn, I., Gartemann, K. - H., Guetzkow, T., Eichler, W., Pühler, A., et al. (2009). Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics. MICROBIOLOGY, 155(7), 2306-2319. doi:10.1099/mic.0.028233-0
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591844
Kroeber, M., Bekel, T., Diaz, N. N., Goesmann, A., Jaenicke, S., Krause, L., Miller, D., et al. (2009). Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. JOURNAL OF BIOTECHNOLOGY, 142(1), 38-49. doi:10.1016/j.jbiotec.2009.02.010
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1633812
Jochmann, N., Kurze, A. - K., Czaja, L. F., Brinkrolf, K., Brune, I., Hueser, A. T., Hansmeier, N., et al. (2009). Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays. MICROBIOLOGY, 155(5), 1459-1477. doi:10.1099/mic.0.025841-0
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology, 140(1-2), 3-12. doi:10.1016/j.jbiotec.2009.01.006
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292 OA
Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics, 9(1), 449. doi:10.1186/1471-2164-9-449
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
Vorhölter, F. - J., Schneiker-Bekel, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., et al. (2008). The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology, 134(1-2), 33-45. doi:10.1016/j.jbiotec.2007.12.013
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078
Brinkrolf, K., Ploeger, S., Solle, S., Brune, I., Nentwich, S. S., Hueser, A. T., Kalinowski, J., et al. (2008). The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences. MICROBIOLOGY, 154(4), 1068-1081. doi:10.1099/mic.0.2007/014001-0
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585980
Schlueter, A., Krause, L., Szczepanowski, R., Goesmann, A., & Pühler, A. (2008). Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant. Journal of Biotechnology, 136(1-2), 65-76. doi:10.1016/j.jbiotec.2008.03.017
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592318
Meschini, E. P., Blanco, F. A., Zanetti, M. E., Beker, M. P., Küster, H., Pühler, A., & Aguilar, O. M. (2008). Host genes involved in nodulation preference in common bean (Phaseolus vulgaris)-Rhizobium etli symbiosis revealed - by suppressive subtractive hybridization. MOLECULAR PLANT-MICROBE INTERACTIONS, 21(4), 459-468. doi:10.1094/MPMI-21-4-0459
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560 OA
Rückert, C., Milse, J., Albersmeier, A., Koch, D. J., Pühler, A., & Kalinowski, J. (2008). The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules. BMC GENOMICS, 9(1), 483. doi:10.1186/1471-2164-9-483
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585914
Pühler, A., & Selbitschka, W. (2008). Genome research in the light of ultrafast sequencing technologies. JOURNAL OF BIOTECHNOLOGY, 136(1-2), 1-2. doi:10.1016/j.jbiotec.2008.06.004
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585969
Szczepanowski, R., Bekel, T., Goesmann, A., Krause, L., Kroemeke, H., Kaiser, O., Eichler, W., et al. (2008). Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology. JOURNAL OF BIOTECHNOLOGY, 136(1-2), 54-64. doi:10.1016/j.jbiotec.2008.03.020
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592210
Jungwirth, B., Emer, D., Brune, I., Hansmeier, N., Pühler, A., Eikmanns, B. J., & Tauch, A. (2008). Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR. FEMS MICROBIOLOGY LETTERS, 281(2), 190-197. doi:10.1111/j.1574-6968.2008.01098.x
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586869
Serrania, J., Vorhölter, F. - J., Niehaus, K., Pühler, A., & Becker, A. (2008). Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data. Journal of Biotechnology, 135(3), 309-317. doi:10.1016/j.jbiotec.2008.04.011
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY, 136(1-2), 91-101. doi:10.1016/j.jbiotec.2008.06.003
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586719
Kohl, T., Baumbach, J., Jungwirth, B., Pühler, A., & Tauch, A. (2008). The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator. JOURNAL OF BIOTECHNOLOGY, 135(4), 340-350. doi:10.1016/j.jbiotec.2008.05.011
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
Stiens, M., Becker, A., Bekel, T., Gödde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., et al. (2008). Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology, 136(1-2), 31-37. doi:10.1016/j.jbiotec.2008.04.014
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
Schlüter, A., Bekel, T., Diaz, N. N., Dondrup, M., Eichenlaub, R., Gartemann, K. - H., Krahn, I., et al. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology, 136(1-2), 77-90. doi:10.1016/j.jbiotec.2008.05.008
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology, 136(1-2), 11-21. doi:10.1016/j.jbiotec.2008.02.009
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345
Gartemann, K. - H., Abt, B., Bekel, T., Burger, A., Engemann, J., Fluegel, M., Gaigalat, L., et al. (2008). The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY, 190(6), 2138-2149. doi:10.1128/JB.01595-07
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology, 136(1-2), 22-30. doi:10.1016/j.jbiotec.2008.03.004
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631126
Kuhn, S., Stiens, M., Pühler, A., & Schlüter, A. (2008). Prevalence of pSmeSM11a-like plasmids in indigenous Sinorhizobium meliloti strains isolated in the course of a field release experiment with genetically modified S-meliloti strains. FEMS MICROBIOLOGY ECOLOGY, 63(1), 118-131. doi:10.1111/j.1574-6941.2007.00399.x
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., et al. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity, 76(12), 5466-5477. doi:10.1128/IAI.00875-08
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2914794
Schotter, J., Panhorst, M., Brzeska, M., Kamp, P. - B., Becker, A., Pühler, A., Reiss, G., et al. (2007). Molecular Detection with Magnetic Labels and Magnetoresistive Sensors. In R. Gross, A. Sidorenko, & L. Tagirov (Eds.), NATO Science Series: Vol. 233. Nanoscale Devices - Fundamentals and Applications (pp. 35-46). Dordrecht: Springer Netherlands. doi:10.1007/978-1-4020-5107-4_4
PUB | DOI
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1), 55. doi:10.1186/1752-0509-1-55
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology, 25(11), 1281-1289. doi:10.1038/nbt1354
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595908
Szczepanowski, R., Krahn, I., Bohn, N., Pühler, A., & Schlueter, A. (2007). Novel macrolide resistance module carried by the IncP-1 beta resistance plasmid pRSB111, isolated from a wastewater treatment plant. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 51(2), 673-678. doi:10.1128/AAC.00802-06
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595939
Pühler, A., & Strack, D. (2007). Molecular basics of mycorrhizal symbioses. PHYTOCHEMISTRY, 68(1), 6-7. doi:10.1016/j.phytochem.2006.09.001
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune, I., Jochmann, N., Brinkrolf, K., Hueser, A. T., Gerstmeir, R., Eikmanns, B. J., Kalinowski, J., et al. (2007). The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum. JOURNAL OF BACTERIOLOGY, 189(7), 2720-2733. doi:10.1128/JB.01876-06
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier, N., Chao, T. - C., Daschkey, S., Muesken, M., Kalinowski, J., Pühler, A., & Tauch, A. (2007). A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411. PROTEOMICS, 7(7), 1076-1096. doi:10.1002/pmic.200600833
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631103
Rinas, U., & Pühler, A. (2007). In memoriam: Wolf-Dieter Deckwer - Merging process engineering and systems biology. JOURNAL OF BIOTECHNOLOGY, 132(4), 341. doi:10.1016/j.jbiotec.2007.10.002
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593538
Schlüter, A., Szczepanowski, R., Pühler, A., & Top, E. M. (2007). Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. FEMS MICROBIOLOGY REVIEWS, 31(4), 449-477. doi:10.1111/j.1574-6976.2007.00074.x
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst, D., Larisch, C., Hueser, A. T., Tauch, A., Pühler, A., & Kalinowski, J. (2007). The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes. JOURNAL OF BACTERIOLOGY, 189(13), 4696-4707. doi:10.1128/JB.00382-07
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593746
Stiens, M., Schneiker-Bekel, S., Pühler, A., & Schlüter, A. (2007). Sequence analysis of the 181-kb accessory plasmid pSmeSM11b, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment. FEMS MICROBIOLOGY LETTERS, 271(2), 297-309. doi:10.1111/j.1574-6968.2007.00731.x
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595014
Schlüter, A., Szczepanowski, R., Kurz, N., Schneiker-Bekel, S., Krahn, I., & Pühler, A. (2007). Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 73(6), 1952-1960. doi:10.1128/AEM.02159-06
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596137
Del Papa, M. F., Pistorio, M., Draghi, W. O., Lozano, M. J., Giusti, M. A., Medina, C., van Dillewijn, P., et al. (2007). Identification and characterization of a nodH ortholog from the alfalfa-nodulating Or191-like rhizobia. Molecular Plant - Microbe Interactions, 20(2), 138-145. doi:10.1094/MPMI-20-2-0138
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause, L., McHardy, A. C., Nattkemper, T. W., Pühler, A., Stoye, J., & Meyer, F. (2007). GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research, 35(2), 540-549. doi:10.1093/nar/gkl1083
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A. M., Bekel, T., et al. (2007). Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry, 68(1), 19-32. doi:10.1016/j.phytochem.2006.09.026
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727 OA
Gaigalat, L., Schlüter, J. - P., Hartmann, M., Mormann, S., Tauch, A., Pühler, A., & Kalinowski, J. (2007). The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum. BMC Molecular Biology, 8(1), 104. doi:10.1186/1471-2199-8-104
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593996
Sewald, N., & Pühler, A. (2007). Molecular systems biology. JOURNAL OF BIOTECHNOLOGY, 129(2), 171-172. doi:10.1016/j.jbiotec.2007.02.010
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946125
Schlüter, A., Krahn, I., Kollin, F., Bonemann, G., Stiens, M., Szczepanowski, R., Schneiker-Bekel, S., et al. (2007). IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes. Appl Environ Microbiol, 73(20), 6345-6350. doi:10.1128/AEM.01177-07
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune, I., Becker, A., Paarmann, D., Albersmeier, A., Kalinowski, J., Pühler, A., & Tauch, A. (2006). Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression. J Biotechnol, 127(1), 21-33. doi:10.1016/j.jbiotec.2006.06.011
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628 OA
Brune, I., Werner, H., Hüser, A. T., Kalinowski, J., Pühler, A., & Tauch, A. (2006). The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum. BMC Genomics, 7(1), 21. doi:10.1186/1471-2164-7-21
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier, N., Chao, T. C., Kalinowski, J., Pühler, A., & Tauch, A. (2006). Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae. PROTEOMICS, 6(8), 2465-2476. doi:10.1002/pmic.200500360
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596821
Selbitschka, W., Keller, M., Miethling-Graff, R., Dresing, U., Schwieger, F., Krahn, I., Homann, I., et al. (2006). Long-term field release of bioluminescent Sinorhizobium meliloti strains to assess the influence of a recA mutation on the strains' survival. MICROBIAL ECOLOGY, 52(3), 583-595. doi:10.1007/s00248-006-9056-6
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