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544 Publikationen

2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710114
Townsend, P. D., Jungwirth, B., Pojer, F., Bußmann, M., Money, V. A., Cole, S. T., Pühler, A., Tauch, A., Bott, M., Cann, M. J., et al. (2014). The Crystal Structures of Apo and cAMP-Bound GlxR from Corynebacterium glutamicum Reveal Structural and Dynamic Changes upon cAMP Binding in CRP/FNR Family Transcription Factors. PloS one 9, 113265.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
Wendler, S., Ortseifen, V., Persicke, M., Klein, A., Neshat, A., Niehaus, K., Schneiker-Bekel, S., Walter, F., Wehmeier, U. F., Kalinowski, J., et al. (2014). Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110. Journal of Biotechnology 191, 113-120.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676049
Schlüter, A., Nordmann, P., Bonnin, R. A., Millemann, Y., Eikmeyer, F. G., Wibberg, D., Pühler, A., and Poirel, L. (2014). IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolates. Antimicrobial Agents and Chemotherapy 58, 3768-3773.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
Wibberg, D., Luque-Almagro, V. M., Igeño, M. I., Bremges, A., Roldán, M. D., Merchán, F., Sáez, L. P., Guijo, M. I., Manso, M. I., Macías, D., et al. (2014). Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology 175, 67-68.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969
Mentz, A., Neshat, A., Pfeifer-Sancar, K., Pühler, A., Rückert, C., and Kalinowski, J. (2013). Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032. BMC Genomics 14, 714.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193
Eikmeyer, F. G., Rademacher, A., Hanreich, A., Hennig, M., Jaenicke, S., Maus, I., Wibberg, D., Zakrzewski, M., Pühler, A., Klocke, M., et al. (2013). Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms. Biotechnology for Biofuels 6:49.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548270
Jungwirth, B., Sala, C., Kohl, T. A., Uplekar, S., Baumbach, J., Cole, S. T., Pühler, A., and Tauch, A. (2013). High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum. Microbiology 159, 12-22.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., Borriss, R., Grosch, R., Pühler, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology 167, 142-155.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Wibberg, D., Blom, J., Rückert, C., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A., and Scharf, B. E. (2013). Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis. Journal of Biotechnology 168, 731-733.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., Goesmann, A., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology 168, 729-730.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
Wendler, S., Hürtgen, D., Kalinowski, J., Klein, A., Niehaus, K., Schulte, F., Schwientek, P., Wehlmann, H., Wehmeier, U. F., and Pühler, A. (2013). The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism. Journal of Biotechnology 167, 178-189.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., Romand, S., Hesse, F., Budach, W. E., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology 31, 694-695.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645247
Maus, I., Wibberg, D., Stantscheff, R., Cibis, K., Eikmeyer, F. G., König, H., Pühler, A., and Schlüter, A. (2013). Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp Mb1 isolated from a production-scale biogas plant. Journal of Biotechnology 168, 734-736.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2565642
Dagan, T., Roettger, M., Stucken, K., Landan, G., Koch, R., Major, P., Gould, S. B., Goremykin, V. V., Rippka, R., de Marsac, N. T., et al. (2013). Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids. Genome Biology And Evolution 5, 31-44.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605230
Hanreich, A., Schimpf, U., Zakrzewski, M., Schlüter, A., Benndorf, D., Heyer, R., Rapp, E., Pühler, A., Reichl, U., and Klocke, M. (2013). Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation. Systematic and Applied Microbiology 36, 330-338.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605244
Schatschneider, S., Persicke, M., Watt, T., Hublik, G., Pühler, A., Niehaus, K., and Vorhölter, F. - J. (2013). Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100. Journal of Biotechnology 167, 123-134.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168, 739-740.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
Koeck, D. E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., Zverlov, V. V., Pühler, A., Schwarz, W. H., et al. (2013). Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology 168, 62-63.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557779
Weidner, S., Baumgarth, B., Göttfert, M., Jaenicke, S., Pühler, A., Schneiker-Bekel, S., Serrania, J., Szczepanowski, R., and Becker, A. (2013). Genome Sequence of Sinorhizobium meliloti Rm41. Genome Announcements 1, e00013-12.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557080
Bonnin, R. A., Poirel, L., Nordmann, P., Eikmeyer, F. G., Wibberg, D., Pühler, A., and Schlüter, A. (2013). Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa. Journal of Antimicrobial Chemotherapy 68, 1060-1065.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614207
Eikmeyer, F. G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., Mayrhuber, E., Grabherr, R., Pühler, A., Schwab, H., et al. (2013). Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging. Journal of Biotechnology 167, 334-343.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, P., Wendler, S., Neshat, A., Eirich, C., Rückert, C., Klein, A., Wehmeier, U. F., Kalinowski, J., Stoye, J., and Pühler, A. (2013). Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology 167, 166-177.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, V. M., Acera, F., Igeño, M. I., Wibberg, D., Roldán, M. D., Sáez, L. P., Hennig, M., Quesada, A., Huertas, M. J., Blom, J., et al. (2013). Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology 15, 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
Plassmeier, J., Busche, T., Molck, S., Persicke, M., Pühler, A., Rückert, C., and Kalinowski, J. (2013). A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways. Journal of Biotechnology 163, 225-232.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2546244
Wibberg, D., Szczepanowski, R., Eikmeyer, F. G., Pühler, A., and Schlüter, A. (2013). The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates. Plasmid 69, 127-137.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., and Goesmann, A. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology 167, 156-165.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553286
Jungbauer, A., Scheper, T., and Pühler, A. (2012). Current research and future perspectives of applied biotechnology. Journal of Biotechnology 162, 355.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2473849
Weidner, S., Becker, A., Bonilla, I., Jaenicke, S., Lloret, J., Margaret, I., Pühler, A., Ruiz-Sainz, J. E., Schneiker-Bekel, S., Szczepanowski, R., et al. (2012). Genome Sequence of the Soybean Symbiont Sinorhizobium fredii HH103. Journal of Bacteriology 194, 1617-1618.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., Sørensen, S., Pühler, A., and Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology 158, 248-258.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2537690
Vorhölter, F. - J., Wiggerich, H. - G., Scheidle, H., Sidhu, V. K., Mrozek, K., Küster, H., Pühler, A., and Niehaus, K. (2012). Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases. BMC Microbiology 12, 239.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279
Eikmeyer, F. G., Hadiati, A., Szczepanowski, R., Wibberg, D., Schneiker-Bekel, S., Rogers, L. M., Brown, C. B., Top, E. M., Pühler, A., and Schlüter, A. (2012). The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution. Plasmid 68, 13-24.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., Grabherr, R., Schwab, H., Pühler, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology 161, 153-166.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., and Klocke, M. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology 79, 785-799.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
Schwientek, P., Szczepanowski, R., Rückert, C., Kalinowski, J., Klein, A., Selber, K., Wehmeier, U. F., Stoye, J., and Pühler, A. (2012). The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics 13:112.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501307
Pietruszka, J., Pühler, A., and Schembecker, G. (2012). Research on industrial biotechnology within the CLIB-Graduate Cluster - Part I. Journal of Biotechnology 159, 121-122.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364
Meleady, P., Hoffrogge, R., Henry, M., Rupp, O., Bort, J. H., Clarke, C., Brinkrolf, K., Kelly, S., Müller, B., Doolan, P., et al. (2012). Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics. Biotechnology and Bioengineering 109, 1386-1394.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., Noll, T., Borth, N., and Grillari, J. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology 158, 151-155.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501774
Wendisch, V. F., and Pühler, A. (2012). Microbes and industrial biotechnology. Journal of Biotechnology 158, 157-158.
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
Hain, T., Ghai, R., Billion, A., Kuenne, C. T., Steinweg, C., Izar, B., Mohamed, W., Mraheil, M., Domann, E., Schaffrath, S., et al. (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics 13, 144.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., Farwick, M., Goesmann, A., Pühler, A., et al. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell 11, 1582-1583.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
Strobel, T., Al-Dilaimi, A., Blom, J., Gessner, A., Kalinowski, J., Luzhetska, M., Pühler, A., Szczepanowski, R., Bechthold, A., and Rückert, C. (2012). Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae. BMC Genomics 13, 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
Schork, S., Schlüter, A., Blom, J., Schneiker-Bekel, S., Pühler, A., Goesmann, A., Frosch, M., and Schoen, C. (2012). Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology 194, 5144-5145.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Maus, I., Wibberg, D., Stantscheff, R., Eikmeyer, F. G., Seffner, A., Boelter, J., Szczepanowski, R., Blom, J., Jaenicke, S., König, H., et al. (2012). Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology 194, 5487-5488.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513297
Pauling, J., Rottger, R., Neuner, A., Salgado, H., Collado-Vides, J., Kalaghatgi, P., Azevedo, V., Tauch, A., Pühler, A., and Baumbach, J. (2012). On the trail of EHEC/EAEC-unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria. Integrative Biology 4, 728-733.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
Schwientek, P., Szczepanowski, R., Rückert, C., Stoye, J., and Pühler, A. (2011). Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology. Journal of Biotechnology 155, 68-77.
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2011 | Zeitschriftenaufsatz | PUB-ID: 2401477
Mattiasson, B., and Pühler, A. (2011). Towards sustainable biotechnology. Journal of Biotechnology 152, 113.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., and Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters 323, 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., Szczepanowski, R., Goesmann, A., Setubal, J. C., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology 155, 50-62.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., Brinkrolf, K., Goesmann, A., Szczepanowski, R., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology 154, 312-320.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., Borth, N., Goesmann, A., Grillari, J., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology 156, 227-235.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
Persicke, M., Plassmeier, J., Neuweger, H., Rückert, C., Pühler, A., and Kalinowski, J. (2011). Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites. Journal of Biotechnology 154, 171-178.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
Borriss, R., Chen, X. - H., Rückert, C., Blom, J., Becker, A., Baumgarth, B., Fan, B., Pukall, R., Schumann, P., Sproer, C., et al. (2011). Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons. Int J Syst Evol Microbiol 61, 1786-1801.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326481
Mayer, L., Vendruscolo, C. T., da Silva, W. P., Vorhölter, F. - J., Becker, A., and Pühler, A. (2011). Insights into the genome of the xanthan-producing phytopathogen Xanthomonas arboricola pv. pruni 109 by comparative genomic hybridization. Journal of Biotechnology 155, 40-49.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808
Plassmeier, J., Persicke, M., Pühler, A., Sterthoff, C., Rückert, C., and Kalinowski, J. (2011). Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicum. Journal of Biotechnology 159, 1-11.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., Tauch, A., Borth, N., Grillari, J., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings 5, P6.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404874
Schatschneider, S., Vorhölter, F. - J., Rückert, C., Becker, A., Eisenreich, W., Pühler, A., and Niehaus, K. (2011). Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling. Molecular Genetics and Genomics 286, 247-259.
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A., and Schlüter, A. (2011). “Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods” in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, de Bruijn, F. J. ed. (Wiley-Blackwell), 403-414.
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317680
Zhou, L., Vorhölter, F. - J., He, Y. - Q., Jiang, B. - L., Tang, J. - L., Xu, Y., Pühler, A., and He, Y. - W. (2011). Gene discovery by genome-wide CDS re-prediction and microarray-based transcriptional analysis in phytopathogen Xanthomonas campestris. BMC Genomics 12, 359.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., Vorhölter, F. - J., Weidner, S., Goesmann, A., et al. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology 155, 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K. - H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., et al. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE 6, e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S. H., Höner zu Siederdissen, C., Bort, J. A. H., Wieser, M., et al. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology 153, 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968039
Torres Tejerizo, G., Florencia Del Papa, M., Eugenia Soria-Diaz, M., Draghi, W., Lozano, M., de los Angeles Giusti, M., Manyani, H., Megias, M., Gil Serrano, A., Pühler, A., et al. (2011). The Nodulation of Alfalfa by the Acid-Tolerant Rhizobium sp. Strain LPU83 Does Not Require Sulfated Forms of Lipochitooligosaccharide Nodulation Signals. Journal of Bacteriology 193, 30-39.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400
Kalinowski, J., Rückert, C., Szczepanowski, R., and Pühler, A. (2010). Advanced Genomics and Transcriptomics of Industrial Microorganisms. Chemie Ingenieur Technik 82, 1518-1519.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1903875
de Lucena, D. K., Pühler, A., and Weidner, S. (2010). The role of sigma factor RpoH1 in the pH stress response of Sinorhizobium meliloti. BMC Microbiology 10, 256.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275
Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., Arnold, W., Bekel, T., Blom, J., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics 11:91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
Steinweg, C., Kuenne, C. T., Billion, A., Mraheil, M. A., Domann, E., Ghai, R., Barbuddhe, S. B., Kaerst, U., Goesmann, A., Pühler, A., et al. (2010). Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology 192, 1473-1474.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
Gölzhäuser, A., Nattkemper, T. W., Niehaus, K., Pühler, A., and Sauer, M. (2010). BioImaging: Contributions from biology, physics and informatics. Journal of Biotechnology 149, 227-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635309
Hellweg, C., Pühler, A., and Weidner, S. (2009). The time course of the transcriptomic response of Sinorhizobium meliloti 1021 following a shift to acidic pH. BMC MICROBIOLOGY 9, 37.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., and Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10:154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635951
Nentwich, S. S., Brinkrolf, K., Gaigalat, L., Hueser, A. T., Rey, D. A., Mohrbach, T., Marin, K., Pühler, A., Tauch, A., and Kalinowski, J. (2009). Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032. MICROBIOLOGY 155, 150-164.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., Fricke, W. F., Martinez-Arias, R., Bartels, D., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY 11, 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634443
Pühler, A., and Selbitschka, W. (2009). Functional genome research on bacteria relevant for agriculture, environment and biotechnology. JOURNAL OF BIOTECHNOLOGY 140, 1-2.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., Rüberg, S., Runte, K., Schroeder, B. K., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY 140, 45-50.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., Kuester, H., Linke, B., Mertens, D., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10:50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591546
Szczepanowski, R., Linke, B., Krahn, I., Gartemann, K. - H., Guetzkow, T., Eichler, W., Pühler, A., and Schlueter, A. (2009). Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics. MICROBIOLOGY 155, 2306-2319.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591844
Kroeber, M., Bekel, T., Diaz, N. N., Goesmann, A., Jaenicke, S., Krause, L., Miller, D., Runte, K. J., Viehoever, P., Pühler, A., et al. (2009). Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. JOURNAL OF BIOTECHNOLOGY 142, 38-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1633812
Jochmann, N., Kurze, A. - K., Czaja, L. F., Brinkrolf, K., Brune, I., Hueser, A. T., Hansmeier, N., Pühler, A., Borovok, I., and Tauch, A. (2009). Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays. MICROBIOLOGY 155, 1459-1477.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., Rupp, O., Zakrzewski, M., Pühler, A., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292
Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., Bartels, D., Buhrmester, J., Choudhuri, J. V., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics 9, 449.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
Vorhölter, F. - J., Schneiker-Bekel, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., Patschkowski, T., Rückert, C., Schmid, J., et al. (2008). The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology 134, 33-45.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585980
Schlueter, A., Krause, L., Szczepanowski, R., Goesmann, A., and Pühler, A. (2008). Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant. Journal of Biotechnology 136, 65-76.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078
Brinkrolf, K., Ploeger, S., Solle, S., Brune, I., Nentwich, S. S., Hueser, A. T., Kalinowski, J., Pühler, A., and Tauch, A. (2008). The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences. MICROBIOLOGY 154, 1068-1081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592318
Meschini, E. P., Blanco, F. A., Zanetti, M. E., Beker, M. P., Küster, H., Pühler, A., and Aguilar, O. M. (2008). Host genes involved in nodulation preference in common bean (Phaseolus vulgaris)-Rhizobium etli symbiosis revealed - by suppressive subtractive hybridization. MOLECULAR PLANT-MICROBE INTERACTIONS 21, 459-468.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560
Rückert, C., Milse, J., Albersmeier, A., Koch, D. J., Pühler, A., and Kalinowski, J. (2008). The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules. BMC GENOMICS 9, 483.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585914
Pühler, A., and Selbitschka, W. (2008). Genome research in the light of ultrafast sequencing technologies. JOURNAL OF BIOTECHNOLOGY 136, 1-2.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585969
Szczepanowski, R., Bekel, T., Goesmann, A., Krause, L., Kroemeke, H., Kaiser, O., Eichler, W., Pühler, A., and Schlueter, A. (2008). Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology. JOURNAL OF BIOTECHNOLOGY 136, 54-64.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592210
Jungwirth, B., Emer, D., Brune, I., Hansmeier, N., Pühler, A., Eikmanns, B. J., and Tauch, A. (2008). Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR. FEMS MICROBIOLOGY LETTERS 281, 190-197.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K. J., Schlüter, A., Stoye, J., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136, 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586869
Serrania, J., Vorhölter, F. - J., Niehaus, K., Pühler, A., and Becker, A. (2008). Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data. Journal of Biotechnology 135, 309-317.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
Stiens, M., Becker, A., Bekel, T., Gödde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., Selbitschka, W., Weidner, S., Schlüter, A., et al. (2008). Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology 136, 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
Schlüter, A., Bekel, T., Diaz, N. N., Dondrup, M., Eichenlaub, R., Gartemann, K. - H., Krahn, I., Krause, L., Kroemeke, H., Kruse, O., et al. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology 136, 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586719
Kohl, T., Baumbach, J., Jungwirth, B., Pühler, A., and Tauch, A. (2008). The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator. JOURNAL OF BIOTECHNOLOGY 135, 340-350.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., Bekel, T., Brinkrolf, K., Brune, I., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology 136, 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345
Gartemann, K. - H., Abt, B., Bekel, T., Burger, A., Engemann, J., Fluegel, M., Gaigalat, L., Goesmann, A., Graefen, I., Kalinowski, J., et al. (2008). The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY 190, 2138-2149.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., Blom, J., Brinkrolf, K., Brune, I., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology 136, 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631126
Kuhn, S., Stiens, M., Pühler, A., and Schlüter, A. (2008). Prevalence of pSmeSM11a-like plasmids in indigenous Sinorhizobium meliloti strains isolated in the course of a field release experiment with genetically modified S-meliloti strains. FEMS MICROBIOLOGY ECOLOGY 63, 118-131.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., and Beutin, L. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity 76, 5466-5477.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2914794
Schotter, J., Panhorst, M., Brzeska, M., Kamp, P. - B., Becker, A., Pühler, A., Reiss, G., and Brückl, H. (2007). “Molecular Detection with Magnetic Labels and Magnetoresistive Sensors” in Nanoscale Devices - Fundamentals and Applications, Gross, R., Sidorenko, A., and Tagirov, L. eds. NATO Science Series, vol. 233, (Dordrecht: Springer Netherlands), 35-46.
PUB | DOI
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1, 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S., Bode, E., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25, 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 

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