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543 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439
Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110
Schaffert L, März C, Burkhardt L, Droste J, Brandt D, Busche T, Rosen W, Schneiker-Bekel S, Persicke M, Pühler A, Kalinowski J (2019)
Microbial Cell Factories 18: 114.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223
de.NBI Cloud federation through ELIXIR AAI
Belmann P, Fischer B, Krüger J, Procházka M, Rasche H, Prinz M, Hanussek M, Lang M, Bartusch F, Gläßle B, Krüger J, et al. (2019)
F1000Research 8: 842.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934570
Insight into the structure, function and conjugative transfer of pLPU83a, an accessory plasmid of Rhizobium favelukesii LPU83
Castellani LG, Nilsson JF, Wibberg D, Schlüter A, Pühler A, Brom S, Pistorio M, Tejerizo GT (2019)
Plasmid.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes
Nelkner J, Henke C, Lin TW, Pätzold W, Hassa J, Jaenicke S, Grosch R, Pühler A, Sczyrba A, Schlüter A (2019)
Genes 10(6): 424.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935899
Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry
López JL, Lozano MJ, Lagares A, Fabre ML, Draghi WO, Del Papa MF, Pistorio M, Becker A, Wibberg D, Schlüter A, Pühler A, et al. (2019)
mBio 10(3): e00505-19.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556
A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani
Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2019)
Scientific Reports 9: 7221.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920160
Die CeBiT ec Schülerakademie „Synthetische Biologie/Biotechnologie “– Begabtenförderung in einem zukunftsträchtigen Forschungsfeld
Arnold W, Grotjohann N, Pühler A, Röllke K, Selbitschka W (2018)
ABB-Information. Jahresheft 2017.
PUB
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2018)
Microbial Biotechnology 11(4): 667-679.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920169
Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats
Salto IP, Torres Tejerizo G, Wibberg D, Pühler A, Schlüter A, Pistorio M (2018)
Scientific Reports 8(1): 7783.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920170
Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants
Hassa J, Maus I, Off S, Pühler A, Scherer P, Klocke M, Schlüter A (2018)
Applied Microbiology and Biotechnology 102(12): 5045-5063.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920168 PUB | DOI
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930510
Comparative transcription profiling of two fermentation cultures of Xanthomonas campestris pv. campestris B100 sampled in the growth and in the stationary phase
Alkhateeb R, Vorhölter F-J, Steffens T, Rückert C, Ortseifen V, Hublik G, Niehaus K, Pühler A (2018)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102(15): 6613-6625.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors
Maus I, Rumming M, Bergmann I, Heeg K, Pohl M, Nettmann E, Jaenicke S, Blom J, Pühler A, Schlüter A, Sczyrba A, et al. (2018)
Biotechnology for Biofuels 11: 167.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920173
Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11
Wibberg D, Salto IP, Eikmeyer FG, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2018)
Antimicrobial Agents and Chemotherapy 62(5): e00212-18.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
JOURNAL OF BIOTECHNOLOGY 267: 12-18.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116
The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110
Wolf T, Droste J, Gren T, Ortseifen V, Schneiker-Bekel S, Zemke T, Pühler A, Kalinowski J (2017)
BMC Genomics 18: 562.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, et al. (2017)
Biotechnology for Biofuels 10(1): 264.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910369
Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis
Maus I, Kim YS, Wibberg D, Stolze Y, Off S, Antonczyk S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Microbiology and Biotechnology 27(2): 321-334.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528
Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis
Wolf T, Schneiker-Bekel S, Neshat A, Ortseifen V, Wibberg D, Zemke T, Pühler A, Kalinowski J (2017)
JOURNAL OF BIOTECHNOLOGY 251: 112-123.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911997
A metabolomic approach to characterize the acid-tolerance response in Sinorhizobium meliloti
Omar Draghi W, Florencia Del Papa M, Barsch A, Albicoro FJ, Lozano MJ, Pühler A, Niehaus K, Lagares A (2017)
METABOLOMICS 13(6): 71.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916470
The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor
Tomazetto G, Hahnke S, Langer T, Wibberg D, Blom J, Maus I, Pühler A, Klocke M, Schlüter A (2017)
Journal of Biotechnology 257: 178-186.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales
Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916406
Genome content, metabolic pathways and biotechnological potential of the psychrophilic Arctic bacterium Psychrobacter sp DAB_AL43B, a source and a host of novel Psychrobacter-specific vectors
Lasek R, Dziewit L, Ciok A, Decewicz P, Romaniuk K, Jedrys Z, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Journal of Biotechnology 263: 64-74.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916435
Lifestyle-determining extrachromosomal replicon pAMV1 and its contribution to the carbon metabolism of the methylotrophic bacterium Paracoccus aminovorans JCM 7685
Czarnecki J, Dziewit L, Puzyna M, Prochwicz E, Tudek A, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Environmental Microbiology 19(11): 4536-4550.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538 PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916490
Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3
Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2017)
Archives of Microbiology 199(7): 1065-1068.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462
Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data
Alkhateeb R, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter F-J (2017)
Journal of Biotechnology 253: 55-61.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970
Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993
Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Pühler A, Sczyrba A, Schlüter A (2016)
Biotechnology for Biofuels 9: 156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903660
The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100
Steffens T, Vorhölter F-J, Giampa M, Hublik G, Pühler A, Niehaus K (2016)
BMC Microbiology 16: 93.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917144
Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes
Wibberg D, Andersson L, Tzelepis G, Rupp O, Blom J, Jelonek L, Pühler A, Fogelqvist J, Varrelmann M, Schlüter A, Dixelius C (2016)
BMC Genomics 17: 245.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors
Gren T, Ortseifen V, Wibberg D, Schneiker-Bekel S, Bednarz H, Niehaus K, Zemke T, Persicke M, Pühler A, Kalinowski J (2016)
Journal of Biotechnology 232: 79-88.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908260
Rhizobium favelukesii sp nov., isolated from the root nodules of alfalfa (Medicago sativa L)
Torres Tejerizo GA, Antonio Rogel M, Ormeno-Orrillo E, Julia Althabegoiti M, Fernanda Nilsson J, Niehaus K, Schlüter A, Pühler A, Florencia Del Papa M, Lagares A, Martinez-Romero E, et al. (2016)
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 66: 4451-4457.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905122
A consolidated analysis of the physiologic and molecular responses induced under acid stress in the legume-symbiont model-soil bacterium Sinorhizobium meliloti
Draghi WO, Del Papa MF, Hellweg C, Watt SA, Watt TF, Barsch A, Lozano MJ, Lagares, A. J, Salas ME, Lopez JL, Albicoro FJ, et al. (2016)
SCIENTIFIC REPORTS 6: 29278.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917142
Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670
Wibberg D, Andersson L, Rupp O, Goesmann A, Pühler A, Varrelmann M, Dixelius C, Schlüter A (2016)
Journal of Biotechnology 222: 11-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691
Genomics of high molecular weight plasmids isolated from an on-farm biopurification system
Martini MC, Wibberg D, Lozano M, Torres Tejerizo G, Albicoro FJ, Jaenicke S, van Elsas JD, Petroni A, Garcillan-Barcia MP, de la Cruz F, Schlüter A, et al. (2016)
Scientific Reports 6: 28284.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A (2016)
Journal of Biotechnology 232: 50-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing
Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, et al. (2016)
Journal of Biotechnology 232: 61-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System
Wolf T, Gren T, Thieme E, Wibberg D, Zemke T, Pühler A, Kalinowski J (2016)
Journal of Biotechnology 231: 122-128.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters
Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, et al. (2016)
Journal of Proteomics 131: 140-148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900928
Back to the future of soil metagenomics
Nesme J, Achouak W, Agathos S, Bailey M, Baldrian P, Brunel D, Frostegard A, Heulin T, Jansson JK, Jurkevitch E, Kowalchuk GA, et al. (2016)
Frontiers in Microbiology 7: 73.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901808 PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, et al. (2016)
Biotechnology for Biofuels 9(1): 171.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905629
Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor
Tomazetto G, Hahnke S, Koeck DE, Wibberg D, Maus I, Pühler A, Klocke M, Schlüter A (2016)
Journal of Biotechnology 232: 38-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905631
Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris
Leßmeier L, Alkhateeb R, Schulte F, Steffens T, Loka TP, Pühler A, Niehaus K, Vorhölter F-J (2016)
Journal of Biotechnology 232: 89-98.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064
Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4).
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms
Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger K-E, Ernst JF (2015)
Journal of Biotechnology 211: 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297
Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates
Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A (2015)
Plos One 10(12): e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2768627
Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Eikmeyer FG, Heinl S, Marx H, Pühler A, Grabherr R, Schlüter A (2015)
PLoS ONE 10(7): e0134149.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
Stolze Y, Zakrzewski M, Maus I, Eikmeyer FG, Jaenicke S, Rottmann N, Siebner C, Pühler A, Schlüter A (2015)
Biotechnology for Biofuels 8: 14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733521
Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample
Stoeveken J, Singh R, Kolkenbrock S, Zakrzewski M, Wibberg D, Eikmeyer FG, Pühler A, Schlüter A, Moerschbacher BM (2015)
Journal of Biotechnology 201: 60-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717648
Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor
Hahnke S, Maus I, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2015)
Journal of Biotechnology 193: 34-36.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster
Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, et al. (2015)
Journal of Proteomics 125: 1-16.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901302
Analysis of the pathogenic interaction of R. solani On L. sativa by means of transcriptomics
Verwaaijen B, Pühler A, Niehaus K, Schlüter A (2015)
Mycoses 58(Suppl. 3): 49-50.
PUB | WoS
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733509
Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants
Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, Fracowiak J, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 201: 43-53.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679
The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean
Vinardell JM, Acosta-Jurado S, Göttfert M, Zehner S, Becker A, Baena-Ropero I, Blom J, Crespo-Rivas JC, Goesmann A, Jaenicke S, Krol E, et al. (2015)
Molecular Plant-Microbe Interactions 28(7): 811-824.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2778477
Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686
Dziewit L, Czarnecki J, Prochwicz E, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)
Frontiers in Microbiology 6: 852.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731076
Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals
Dziewit L, Pyzik A, Szuplewska M, Matlakowska R, Mielnicki S, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)
Frontiers in Microbiology 6: 152.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2694187
Functional -Omics for Cell Lines and Processes - The -Omics Technologies on the Example of CHO Cells
Brinkrolf K, Hoffrogge R, Hackl M, Tauch A, Baumann M, Noll T, Goesmann A, Pühler A, Borth N (2014)
In: Animal Cell Biotechnology In Biologics Production. Hauser H, Wagner R (Eds); Berlin, Germany: Walter de Gruyter.
PUB
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678800
Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing
Kröber M, Wibberg D, Grosch R, Eikmeyer FG, Verwaaijen B, Chowdhury SP, Hartmann A, Pühler A, Schlüter A (2014)
Frontiers in Microbiology 5: 252.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2684336
Concept of Law in Biology Synthetic Biology - Towards an Engineering Science
Weitze M-D, Pühler A (2014)
European Review 22: S102-S112.
PUB | DOI | WoS
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717549 PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts
Schwientek P, Neshat A, Kalinowski J, Klein A, Rückert C, Schneiker-Bekel S, Wendler S, Stoye J, Pühler A (2014)
Journal of Biotechnology 190: 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing
Jakobi T, Brinkrolf K, Tauch A, Noll T, Stoye J, Pühler A, Goesmann A (2014)
Journal of Biotechnology 190: 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)
Becker J, Timmermann C, Rupp O, Albaum S, Brinkrolf K, Goesmann A, Pühler A, Tauch A, Noll T (2014)
Journal of biotechnology 178: 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2701280
The Genomics Revolution and its Impact on Future Biotechnology
Noll T, Pühler A, Weisshaar B, Wendisch VF (2014)
Journal of Biotechnology 190: 1-1.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658490
Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids
Dziewit L, Czarnecki J, Wibberg D, Radlinska M, Mrozek P, Szymczak M, Schlüter A, Pühler A, Bartosik D (2014)
BMC Genomics 15(1): 124.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines
Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Pühler A, Noll T, Goesmann A (2014)
PLoS ONE 9(1): e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699819
Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis
Schatschneider S, Huber C, Neuweger H, Watt T, Pühler A, Eisenreich W, Wittmann C, Niehaus K, Vorhölter F-J (2014)
Molecular BioSystems 10(10): 2663-2676.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection
Tielen P, Wibberg D, Blom J, Rosin N, Meyer A-K, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, et al. (2014)
Genome announcements 2(1).
PUB | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694915
Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw
Hahnke S, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2014)
Journal of Biotechnology 184: 199-200.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310
Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)
Wibberg D, Jelonek L, Rupp O, Kröber M, Goesmann A, Grosch R, Pühler A, Schlüter A (2014)
Fungal Biology 118(9-10): 800-813.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkämper A, Pühler A, Biener R, Schwartz D, Kalinowski J (2014)
Journal of biotechnology 178: 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685861
Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background
Torres Tejerizo G, Pistorio M, Althabegoiti MJ, Cervantes L, Wibberg D, Schlüter A, Pühler A, Lagares A, Romero D, Brom S (2014)
FEMS Microbiology Ecology 88(3): 565-578.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2675608
Genome sequence of the acid-tolerant strain Rhizobium sp LPU83
Wibberg D, Torres Tejerizo G, Florencia Del Papa M, Martini C, Pühler A, Lagares A, Schlüter A, Pistorio M (2014)
Journal of Biotechnology 176: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926
Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38
Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter F-J, et al. (2014)
Genome announcements 2(2): e00161-14.
PUB | PDF | DOI | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558
First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Liebl W, Schlüter A (2014)
Journal of Biotechnology 192: 154-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710114
The Crystal Structures of Apo and cAMP-Bound GlxR from Corynebacterium glutamicum Reveal Structural and Dynamic Changes upon cAMP Binding in CRP/FNR Family Transcription Factors
Townsend PD, Jungwirth B, Pojer F, Bußmann M, Money VA, Cole ST, Pühler A, Tauch A, Bott M, Cann MJ, Pohl E (2014)
PloS one 9(12): 113265.
PUB | DOI | WoS | PubMed | Europe PMC
 

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