Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association
Mateos J, Staiger D (2023)
The Plant Cell 35(6): 1708-1726.
Zeitschriftenaufsatz
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Abstract / Bemerkung
**Abstract**
RNA-binding proteins (RBPs) have a broad impact on most biochemical, physiological, and developmental processes in a plant’s life. RBPs engage in an on-off relationship with their RNA partners, accompanying virtually every stage in RNA processing and function. While the function of a plethora of RBPs in plant development and stress responses has been described, we are lacking a systems-level understanding of components in RNA-based regulation. Novel techniques have substantially enlarged the compendium of proteins with experimental evidence for binding to RNAs in the cell, the RNA-binding proteome. Furthermore, ribonomics methods have been adapted for use in plants to profile the in vivo binding repertoire of RBPs genome-wide. Here, we discuss how recent technological achievements have provided novel insights into the mode of action of plant RBPs at a genome-wide scale. Furthermore, we touch upon two emerging topics, the connection of RBPs to phase separation in the cell and to extracellular RNAs. Finally, we define open questions to be addressed to move toward an integrated understanding of RBP function.
RNA-binding proteins (RBPs) have a broad impact on most biochemical, physiological, and developmental processes in a plant’s life. RBPs engage in an on-off relationship with their RNA partners, accompanying virtually every stage in RNA processing and function. While the function of a plethora of RBPs in plant development and stress responses has been described, we are lacking a systems-level understanding of components in RNA-based regulation. Novel techniques have substantially enlarged the compendium of proteins with experimental evidence for binding to RNAs in the cell, the RNA-binding proteome. Furthermore, ribonomics methods have been adapted for use in plants to profile the in vivo binding repertoire of RBPs genome-wide. Here, we discuss how recent technological achievements have provided novel insights into the mode of action of plant RBPs at a genome-wide scale. Furthermore, we touch upon two emerging topics, the connection of RBPs to phase separation in the cell and to extracellular RNAs. Finally, we define open questions to be addressed to move toward an integrated understanding of RBP function.
Erscheinungsjahr
2023
Zeitschriftentitel
The Plant Cell
Band
35
Ausgabe
6
Seite(n)
1708-1726
ISSN
1040-4651
eISSN
1532-298X
Page URI
https://pub.uni-bielefeld.de/record/2988864
Zitieren
Mateos J, Staiger D. Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association. The Plant Cell. 2023;35(6):1708-1726.
Mateos, J., & Staiger, D. (2023). Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association. The Plant Cell, 35(6), 1708-1726. https://doi.org/10.1093/plcell/koac345
Mateos, Julieta, and Staiger, Dorothee. 2023. “Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association”. The Plant Cell 35 (6): 1708-1726.
Mateos, J., and Staiger, D. (2023). Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association. The Plant Cell 35, 1708-1726.
Mateos, J., & Staiger, D., 2023. Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association. The Plant Cell, 35(6), p 1708-1726.
J. Mateos and D. Staiger, “Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association”, The Plant Cell, vol. 35, 2023, pp. 1708-1726.
Mateos, J., Staiger, D.: Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association. The Plant Cell. 35, 1708-1726 (2023).
Mateos, Julieta, and Staiger, Dorothee. “Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association”. The Plant Cell 35.6 (2023): 1708-1726.