Goslin: A Grammar of Succinct Lipid Nomenclature

Kopczynski D, Hoffmann N, Peng B, Ahrends R (2020)
Analytical Chemistry 92(16): 10957-10960.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Kopczynski, Dominik; Hoffmann, NilsUniBi; Peng, Bing; Ahrends, Robert
Abstract / Bemerkung
We introduce Goslin, a polyglot grammar for common lipid shorthand nomenclatures based on the LIPID MAPS nomenclature and the shorthand nomenclature established by Liebisch and coauthors and used by LipidHome and SwissLipids. Goslin was designed to address the following pressing issues in the lipidomics field: (1) to simplify the implementation of lipid name handling for developers of mass spectrometry-based lipidomics tools, (2) to offer a tool that unifies and normalizes the main existing lipid name dialects enabling a lipidomics analysis in a high-throughput fashion, and (3) to provide a consistent mapping from lipid shorthand names to lipid building blocks and structural properties. We provide implementations of Goslin in four major programming languages, namely, C++, Java, Python 3, and R to kick-start adoption and integration. Further, we set up a web service for users to work with Goslin directly. All implementations are available free of charge under a permissive open source license.
Erscheinungsjahr
2020
Zeitschriftentitel
Analytical Chemistry
Band
92
Ausgabe
16
Seite(n)
10957-10960
ISSN
0003-2700
eISSN
1520-6882
Page URI
https://pub.uni-bielefeld.de/record/2956705

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Kopczynski D, Hoffmann N, Peng B, Ahrends R. Goslin: A Grammar of Succinct Lipid Nomenclature. Analytical Chemistry. 2020;92(16):10957-10960.
Kopczynski, D., Hoffmann, N., Peng, B., & Ahrends, R. (2020). Goslin: A Grammar of Succinct Lipid Nomenclature. Analytical Chemistry, 92(16), 10957-10960. https://doi.org/10.1021/acs.analchem.0c01690
Kopczynski, D., Hoffmann, N., Peng, B., and Ahrends, R. (2020). Goslin: A Grammar of Succinct Lipid Nomenclature. Analytical Chemistry 92, 10957-10960.
Kopczynski, D., et al., 2020. Goslin: A Grammar of Succinct Lipid Nomenclature. Analytical Chemistry, 92(16), p 10957-10960.
D. Kopczynski, et al., “Goslin: A Grammar of Succinct Lipid Nomenclature”, Analytical Chemistry, vol. 92, 2020, pp. 10957-10960.
Kopczynski, D., Hoffmann, N., Peng, B., Ahrends, R.: Goslin: A Grammar of Succinct Lipid Nomenclature. Analytical Chemistry. 92, 10957-10960 (2020).
Kopczynski, Dominik, Hoffmann, Nils, Peng, Bing, and Ahrends, Robert. “Goslin: A Grammar of Succinct Lipid Nomenclature”. Analytical Chemistry 92.16 (2020): 10957-10960.

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PMID: 32589019
PubMed | Europe PMC

Preprint: 10.1101/2020.04.17.046656

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