HyAsP, a greedy tool for plasmids identification

Müller R, Chauve C (2019)
Bioinformatics 35(21): 4436 – 4439.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Müller, RobertUniBi ; Chauve, Cedric
Abstract / Bemerkung
**Motivation:** Plasmids are ubiquituous in bacterial genomes, and have been shown to be involved in important evolutionary processes, in particular the acquisition of antimicrobial resistance. However separating chromosomal contigs from plasmid contigs and assembling the later is a challenging problem. **Results:** We introduce HyAsP, a tool that identifies, bins and assembles plasmid contigs following a hybrid approach based on a database of known plasmids genes and a greedy assembly algorithm. We test HyAsP on a large sample of bacterial data sets and observe that it generally outperforms other tools. **Availability:** https://github.com/cchauve/HyAsP. **Supplementary information:** Supplementary text and data are available at Bioinformatics online.
Erscheinungsjahr
2019
Zeitschriftentitel
Bioinformatics
Band
35
Ausgabe
21
Seite(n)
4436 – 4439
ISSN
1367-4803
eISSN
1367-4811
Page URI
https://pub.uni-bielefeld.de/record/2935891

Zitieren

Müller R, Chauve C. HyAsP, a greedy tool for plasmids identification. Bioinformatics. 2019;35(21):4436 – 4439.
Müller, R., & Chauve, C. (2019). HyAsP, a greedy tool for plasmids identification. Bioinformatics, 35(21), 4436 – 4439. doi:10.1093/bioinformatics/btz413
Müller, R., and Chauve, C. (2019). HyAsP, a greedy tool for plasmids identification. Bioinformatics 35, 4436 – 4439.
Müller, R., & Chauve, C., 2019. HyAsP, a greedy tool for plasmids identification. Bioinformatics, 35(21), p 4436 – 4439.
R. Müller and C. Chauve, “HyAsP, a greedy tool for plasmids identification”, Bioinformatics, vol. 35, 2019, pp. 4436 – 4439.
Müller, R., Chauve, C.: HyAsP, a greedy tool for plasmids identification. Bioinformatics. 35, 4436 – 4439 (2019).
Müller, Robert, and Chauve, Cedric. “HyAsP, a greedy tool for plasmids identification”. Bioinformatics 35.21 (2019): 4436 – 4439.

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