Role of forefinger and thumb loops in production of  54 and  55 in tRNAs by archaeal Pus10

Joardar A, Jana S, Fitzek E, Gurha P, Majumder M, Chatterjee K, Geisler M, Gupta R (2013)
RNA 19(9): 1279-1294.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
OA 1.57 MB
Joardar, Archi; Jana, Sujata; Fitzek, ElisabethUniBi; Gurha, Priyatansh; Majumder, Mrinmoyee; Chatterjee, Kunal; Geisler, Matt; Gupta, Ramesh
Page URI


Joardar A, Jana S, Fitzek E, et al. Role of forefinger and thumb loops in production of  54 and  55 in tRNAs by archaeal Pus10. RNA. 2013;19(9):1279-1294.
Joardar, A., Jana, S., Fitzek, E., Gurha, P., Majumder, M., Chatterjee, K., Geisler, M., et al. (2013). Role of forefinger and thumb loops in production of  54 and  55 in tRNAs by archaeal Pus10. RNA, 19(9), 1279-1294. doi:10.1261/rna.039230.113
Joardar, A., Jana, S., Fitzek, E., Gurha, P., Majumder, M., Chatterjee, K., Geisler, M., and Gupta, R. (2013). Role of forefinger and thumb loops in production of  54 and  55 in tRNAs by archaeal Pus10. RNA 19, 1279-1294.
Joardar, A., et al., 2013. Role of forefinger and thumb loops in production of  54 and  55 in tRNAs by archaeal Pus10. RNA, 19(9), p 1279-1294.
A. Joardar, et al., “Role of forefinger and thumb loops in production of  54 and  55 in tRNAs by archaeal Pus10”, RNA, vol. 19, 2013, pp. 1279-1294.
Joardar, A., Jana, S., Fitzek, E., Gurha, P., Majumder, M., Chatterjee, K., Geisler, M., Gupta, R.: Role of forefinger and thumb loops in production of  54 and  55 in tRNAs by archaeal Pus10. RNA. 19, 1279-1294 (2013).
Joardar, Archi, Jana, Sujata, Fitzek, Elisabeth, Gurha, Priyatansh, Majumder, Mrinmoyee, Chatterjee, Kunal, Geisler, Matt, and Gupta, Ramesh. “Role of forefinger and thumb loops in production of  54 and  55 in tRNAs by archaeal Pus10”. RNA 19.9 (2013): 1279-1294.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Copyright Statement:
This Item is protected by copyright and/or related rights. [...]
Access Level
OA Open Access
Zuletzt Hochgeladen
MD5 Prüfsumme

8 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Matching tRNA modifications in humans to their known and predicted enzymes.
de Crécy-Lagard V, Boccaletto P, Mangleburg CG, Sharma P, Lowe TM, Leidel SA, Bujnicki JM., Nucleic Acids Res 47(5), 2019
PMID: 30698754
Evolution of Eukaryal and Archaeal Pseudouridine Synthase Pus10.
Fitzek E, Joardar A, Gupta R, Geisler M., J Mol Evol 86(1), 2018
PMID: 29349599
Contribution of protein Gar1 to the RNA-guided and RNA-independent rRNA:Ψ-synthase activities of the archaeal Cbf5 protein.
Fujikane R, Behm-Ansmant I, Tillault AS, Loegler C, Igel-Bourguignon V, Marguet E, Forterre P, Branlant C, Motorin Y, Charpentier B., Sci Rep 8(1), 2018
PMID: 30218085
Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA.
Hori H, Kawamura T, Awai T, Ochi A, Yamagami R, Tomikawa C, Hirata A., Microorganisms 6(4), 2018
PMID: 30347855
The Evolution of Substrate Specificity by tRNA Modification Enzymes.
McKenney KM, Rubio MAT, Alfonzo JD., Enzymes 41(), 2017
PMID: 28601226
Contribution of two conserved histidines to the dual activity of archaeal RNA guide-dependent and -independent pseudouridine synthase Cbf5.
Tillault AS, Fourmann JB, Loegler C, Wieden HJ, Kothe U, Charpentier B., RNA 21(7), 2015
PMID: 25990001
Pseudouridine: still mysterious, but never a fake (uridine)!
Spenkuch F, Motorin Y, Helm M., RNA Biol 11(12), 2014
PMID: 25616362

70 References

Daten bereitgestellt von Europe PubMed Central.

Identification of modulators of TRAIL-induced apoptosis via RNAi-based phenotypic screening.
Aza-Blanc P, Cooper CL, Wagner K, Batalov S, Deveraux QL, Cooke MP., Mol. Cell 12(3), 2003
PMID: 14527409
Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy.
Baudin-Baillieu A, Fabret C, Liang XH, Piekna-Przybylska D, Fournier MJ, Rousset JP., Nucleic Acids Res. 37(22), 2009
PMID: 19820108
Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii.
Blaby IK, Majumder M, Chatterjee K, Jana S, Grosjean H, de Crecy-Lagard V, Gupta R., RNA 17(7), 2011
PMID: 21628430
Protein structure homology modeling using SWISS-MODEL workspace.
Bordoli L, Kiefer F, Arnold K, Benkert P, Battey J, Schwede T., Nat Protoc 4(1), 2009
PMID: 19131951
The RNA Modification Database, RNAMDB: 2011 update.
Cantara WA, Crain PF, Rozenski J, McCloskey JA, Harris KA, Zhang X, Vendeix FA, Fabris D, Agris PF., Nucleic Acids Res. 39(Database issue), 2010
PMID: 21071406
Pseudouridine in RNA: what, where, how, and why.
Charette M, Gray MW., IUBMB Life 49(5), 2000
PMID: 10902565
The archaeal COG1901/DUF358 SPOUT-methyltransferase members, together with pseudouridine synthase Pus10, catalyze the formation of 1-methylpseudouridine at position 54 of tRNA.
Chatterjee K, Blaby IK, Thiaville PC, Majumder M, Grosjean H, Yuan YA, Gupta R, de Crecy-Lagard V., RNA 18(3), 2012
PMID: 22274953
Domain fishing: a first step in protein comparative modelling.
Contreras-Moreira B, Bates PA., Bioinformatics 18(8), 2002
PMID: 12176841
Stabilization of RNA stacking by pseudouridine.
Davis DR., Nucleic Acids Res. 23(24), 1995
PMID: 8559660
rRNA modifications and ribosome function.
Decatur WA, Fournier MJ., Trends Biochem. Sci. 27(7), 2002
PMID: 12114023
RNA-guided nucleotide modification of ribosomal and other RNAs.
Decatur WA, Fournier MJ., J. Biol. Chem. 278(2), 2002
PMID: 12431975
Small non-coding RNAs in Archaea.
Dennis PP, Omer A., Curr. Opin. Microbiol. 8(6), 2005
PMID: 16256421
Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria).
Edmonds CG, Crain PF, Gupta R, Hashizume T, Hocart CH, Kowalak JA, Pomerantz SC, Stetter KO, McCloskey JA., J. Bacteriol. 173(10), 1991
PMID: 1708763
A meta-analysis of genome-wide association scans identifies IL18RAP, PTPN2, TAGAP, and PUS10 as shared risk loci for Crohn's disease and celiac disease.
Festen EA, Goyette P, Green T, Boucher G, Beauchamp C, Trynka G, Dubois PC, Lagace C, Stokkers PC, Hommes DW, Barisani D, Palmieri O, Annese V, van Heel DA, Weersma RK, Daly MJ, Wijmenga C, Rioux JD., PLoS Genet. 7(1), 2011
PMID: 21298027
RNA pseudouridylation: new insights into an old modification.
Ge J, Yu YT., Trends Biochem. Sci. 38(4), 2013
PMID: 23391857
Isolation and chracterization of m5U-methyltransferase from Escherichia coli.
Greenberg R, Dudock B., J. Biol. Chem. 255(17), 1980
PMID: 6997293
How nucleic acids cope with high temperature
Transfer RNAs of Halobacterium volcanii: Sequences of five leucine and three serine tRNAs
Pseudouridine synthases.
Hamma T, Ferre-D'Amare AR., Chem. Biol. 13(11), 2006
PMID: 17113994
RNA structure and function in C/D and H/ACA s(no)RNPs.
Henras AK, Dez C, Henry Y., Curr. Opin. Struct. Biol. 14(3), 2004
PMID: 15193314
Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure.
Hoang C, Chen J, Vizthum CA, Kandel JM, Hamilton CS, Mueller EG, Ferre-D'Amare AR., Mol. Cell 24(4), 2006
PMID: 17188032
tRNAdb 2009: compilation of tRNA sequences and tRNA genes.
Juhling F, Morl M, Hartmann RK, Sprinzl M, Stadler PF, Putz J., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18957446
Spliceosomal snRNA modifications and their function.
Karijolich J, Yu YT., RNA Biol 7(2), 2010
PMID: 20215871
The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles.
Kowalak JA, Dalluge JJ, McCloskey JA, Stetter KO., Biochemistry 33(25), 1994
PMID: 7516708
Clustal W and Clustal X version 2.0.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG., Bioinformatics 23(21), 2007
PMID: 17846036
Lack of pseudouridine 38/39 in the anticodon arm of yeast cytoplasmic tRNA decreases in vivo recoding efficiency.
Lecointe F, Namy O, Hatin I, Simos G, Rousset JP, Grosjean H., J. Biol. Chem. 277(34), 2002
PMID: 12058040
Crystal structure of human Pus10, a novel pseudouridine synthase.
McCleverty CJ, Hornsby M, Spraggon G, Kreusch A., J. Mol. Biol. 373(5), 2007
PMID: 17900615
The many facets of H/ACA ribonucleoproteins.
Meier UT., Chromosoma 114(1), 2005
PMID: 15770508
Combinatorial alanine-scanning.
Morrison KL, Weiss GA., Curr Opin Chem Biol 5(3), 2001
PMID: 11479122
Identification of modified residues in RNAs by reverse transcription-based methods.
Motorin Y, Muller S, Behm-Ansmant I, Branlant C., Meth. Enzymol. 425(), 2007
PMID: 17673078
Pseudouridine formation, the most common transglycosylation in RNA
Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs.
Muller S, Leclerc F, Behm-Ansmant I, Fourmann JB, Charpentier B, Branlant C., Nucleic Acids Res. 36(8), 2008
PMID: 18304947
Translational recoding and RNA modifications
Identification of the TRM2 gene encoding the tRNA(m5U54)methyltransferase of Saccharomyces cerevisiae.
Nordlund ME, Johansson JO, von Pawel-Rammingen U, Bystrom AS., RNA 6(6), 2000
PMID: 10864043
Purification, cloning, and properties of the tRNA psi 55 synthase from Escherichia coli.
Nurse K, Wrzesinski J, Bakin A, Lane BG, Ofengand J., RNA 1(1), 1995
PMID: 7489483
Pseudouridines and pseudouridine synthases of the ribosome.
Ofengand J, Malhotra A, Remme J, Gutgsell NS, Del Campo M, Jean-Charles S, Peil L, Kaya Y., Cold Spring Harb. Symp. Quant. Biol. 66(), 2001
PMID: 12762017
Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit.
Pan H, Agarwalla S, Moustakas DT, Finer-Moore J, Stroud RM., Proc. Natl. Acad. Sci. U.S.A. 100(22), 2003
PMID: 14566049
Direct chemical method for sequencing RNA.
Peattie DA., Proc. Natl. Acad. Sci. U.S.A. 76(4), 1979
PMID: 377283
Formation of the conserved pseudouridine at position 55 in archaeal tRNA.
Roovers M, Hale C, Tricot C, Terns MP, Terns RM, Grosjean H, Droogmans L., Nucleic Acids Res. 34(15), 2006
PMID: 16920741
A method for simultaneous alignment of multiple protein structures.
Shatsky M, Nussinov R, Wolfson HJ., Proteins 56(1), 2004
PMID: 15162494
Identification of a novel gene encoding a flavin-dependent tRNA:m5U methyltransferase in bacteria--evolutionary implications.
Urbonavicius J, Skouloubris S, Myllykallio H, Grosjean H., Nucleic Acids Res. 33(13), 2005
PMID: 16027442
Acquisition of a bacterial RumA-type tRNA(uracil-54, C5)-methyltransferase by Archaea through an ancient horizontal gene transfer.
Urbonavicius J, Auxilien S, Walbott H, Trachana K, Golinelli-Pimpaneau B, Brochier-Armanet C, Grosjean H., Mol. Microbiol. 67(2), 2007
PMID: 18069966
U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP.
Wu G, Xiao M, Yang C, Yu YT., EMBO J. 30(1), 2010
PMID: 21131909
Mechanisms and functions of RNA-guided RNA modification


Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®


PMID: 23898217
PubMed | Europe PMC

Suchen in

Google Scholar