Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109
Abdali N, Younas F, Mafakheri S, Pothula KR, Kleinekathoefer U, Tauch A, Benz R (2018)
BMC BIOCHEMISTRY 19(1): 18.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Abdali, Narges;
Younas, Farhan;
Mafakheri, Samaneh;
Pothula, Karunakar R.;
Kleinekathoefer, Ulrich;
Tauch, AndreasUniBi;
Benz, Roland
Einrichtung
Abstract / Bemerkung
Background: Corynebacterium urealyticum, a pathogenic, multidrug resistant member of the mycolata, is known as causative agent of urinary tract infections although it is a bacterium of the skin flora. This pathogenic bacterium shares with the mycolata the property of having an unusual cell envelope composition and architecture, typical for the genus Corynebacterium. The cell wall of members of the mycolata contains channel-forming proteins for the uptake of solutes. Results: In this study, we provide novel information on the identification and characterization of a pore-forming protein in the cell wall of C. urealyticum DSM 7109. Detergent extracts of whole C. urealyticum cultures formed in lipid bilayer membranes slightly cation-selective pores with a single-channel conductance of 1.75 nS in 1 M KCl. Experiments with different salts and non-electrolytes suggested that the cell wall pore of C. urealyticum is wide and water-filled and has a diameter of about 1.8 nm. Molecular modelling and dynamics has been performed to obtain a model of the pore. For the search of the gene coding for the cell wall pore of C. urealyticum we looked in the known genome of C. urealyticum for a similar chromosomal localization of the porin gene to known porH and porA genes of other Corynebacterium strains. Three genes are located between the genes coding for GroEL2 and polyphosphate kinase (PKK2). Two of the genes (cur_1714 and cur_1715) were expressed in different constructs in C. glutamicum Delta porA Delta porH and in porin-deficient BL21 DE3 Omp8 E. coli strains. The results suggested that the gene cur_1714 codes alone for the cell wall channel. The cell wall porin of C. urealyticum termed PorACur was purified to homogeneity using different biochemical methods and had an apparent molecular mass of about 4 kDa on tricine-containing sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Conclusions: Biophysical characterization of the purified protein (PorACur) suggested indeed that cur_1714 is the gene coding for the pore-forming protein in C. urealyticum because the protein formed in lipid bilayer experiments the same pores as the detergent extract of whole cells. The study is the first report of a cell wall channel in the pathogenic C. urealyticum.
Stichworte
Cell wall channel;
Mycolic acid;
Porin;
Corynebacterium urealyticum;
Lipid bilayer membrane
Erscheinungsjahr
2018
Zeitschriftentitel
BMC BIOCHEMISTRY
Band
19
Ausgabe
1
Art.-Nr.
18
ISSN
1471-2091
Page URI
https://pub.uni-bielefeld.de/record/2920311
Zitieren
Abdali N, Younas F, Mafakheri S, et al. Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109. BMC BIOCHEMISTRY. 2018;19(1): 18.
Abdali, N., Younas, F., Mafakheri, S., Pothula, K. R., Kleinekathoefer, U., Tauch, A., & Benz, R. (2018). Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109. BMC BIOCHEMISTRY, 19(1), 18. doi:10.1186/s12858-018-0093-9
Abdali, Narges, Younas, Farhan, Mafakheri, Samaneh, Pothula, Karunakar R., Kleinekathoefer, Ulrich, Tauch, Andreas, and Benz, Roland. 2018. “Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109”. BMC BIOCHEMISTRY 19 (1): 18.
Abdali, N., Younas, F., Mafakheri, S., Pothula, K. R., Kleinekathoefer, U., Tauch, A., and Benz, R. (2018). Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109. BMC BIOCHEMISTRY 19:18.
Abdali, N., et al., 2018. Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109. BMC BIOCHEMISTRY, 19(1): 18.
N. Abdali, et al., “Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109”, BMC BIOCHEMISTRY, vol. 19, 2018, : 18.
Abdali, N., Younas, F., Mafakheri, S., Pothula, K.R., Kleinekathoefer, U., Tauch, A., Benz, R.: Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109. BMC BIOCHEMISTRY. 19, : 18 (2018).
Abdali, Narges, Younas, Farhan, Mafakheri, Samaneh, Pothula, Karunakar R., Kleinekathoefer, Ulrich, Tauch, Andreas, and Benz, Roland. “Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109”. BMC BIOCHEMISTRY 19.1 (2018): 18.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
80 References
Daten bereitgestellt von Europe PubMed Central.
Thin-layer chromatographic analysis of mycolic acid and other long-chain components in whole-organism methanolysates of coryneform and related taxa.
Goodfellow M, Collins MD, Minnikin DE., J. Gen. Microbiol. 96(2), 1976
PMID: 825611
Goodfellow M, Collins MD, Minnikin DE., J. Gen. Microbiol. 96(2), 1976
PMID: 825611
Permeation of hydrophilic molecules through the outer membrane of gram-negative bacteria. Review on bacterial porins.
Benz R, Bauer K., Eur. J. Biochem. 176(1), 1988
PMID: 2901351
Benz R, Bauer K., Eur. J. Biochem. 176(1), 1988
PMID: 2901351
R, 1994
R, 2001
Molecular basis of bacterial outer membrane permeability revisited.
Nikaido H., Microbiol. Mol. Biol. Rev. 67(4), 2003
PMID: 14665678
Nikaido H., Microbiol. Mol. Biol. Rev. 67(4), 2003
PMID: 14665678
A, 2014
C, Genome Announc 3(4), 2015
AUTHOR UNKNOWN, 0
Coryneform bacteria in infectious diseases: clinical and laboratory aspects.
Coyle MB, Lipsky BA., Clin. Microbiol. Rev. 3(3), 1990
PMID: 2116939
Coyle MB, Lipsky BA., Clin. Microbiol. Rev. 3(3), 1990
PMID: 2116939
Clinical microbiology of coryneform bacteria.
Funke G, von Graevenitz A, Clarridge JE 3rd, Bernard KA., Clin. Microbiol. Rev. 10(1), 1997
PMID: 8993861
Funke G, von Graevenitz A, Clarridge JE 3rd, Bernard KA., Clin. Microbiol. Rev. 10(1), 1997
PMID: 8993861
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Puhler A., J. Bacteriol. 187(13), 2005
PMID: 15968079
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Puhler A., J. Bacteriol. 187(13), 2005
PMID: 15968079
[Significant bacteremias by Corynebacterium amycolatum: an emergent pathogen].
Oteo J, Aracil B, Ignacio Alos J, Luis Gomez-Garces J., Enferm. Infecc. Microbiol. Clin. 19(3), 2001
PMID: 11333587
Oteo J, Aracil B, Ignacio Alos J, Luis Gomez-Garces J., Enferm. Infecc. Microbiol. Clin. 19(3), 2001
PMID: 11333587
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Gotker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18367281
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Gotker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18367281
Taxonomic implications of the chemical analysis of the D2 group of corynebacteria.
Herrera-Alcaraz EA, Valero-Guillen PL, Martin-Luengo F, Soriano F., FEMS Microbiol. Lett. 60(3), 1990
PMID: 2083845
Herrera-Alcaraz EA, Valero-Guillen PL, Martin-Luengo F, Soriano F., FEMS Microbiol. Lett. 60(3), 1990
PMID: 2083845
Corynebacterium group D2 ("Corynebacterium urealyticum") constitutes a new genomic species.
Riegel P, Grimont PA, De Briel D, Ageron E, Jehl F, Pelegrin M, Monteil H, Minck R., Res. Microbiol. 143(3), 1992
PMID: 1448615
Riegel P, Grimont PA, De Briel D, Ageron E, Jehl F, Pelegrin M, Monteil H, Minck R., Res. Microbiol. 143(3), 1992
PMID: 1448615
Microbiological and clinical features of Corynebacterium urealyticum: urinary tract stones and genomics as the Rosetta Stone.
Soriano F, Tauch A., Clin. Microbiol. Infect. 14(7), 2008
PMID: 18558935
Soriano F, Tauch A., Clin. Microbiol. Infect. 14(7), 2008
PMID: 18558935
Susceptibility of urinary isolates of Corynebacterium group D2 to fifteen antimicrobials and acetohydroxamic acid.
Soriano F, Ponte C, Santamaria M, Torres A, Fernandez-Roblas R., J. Antimicrob. Chemother. 20(3), 1987
PMID: 3479417
Soriano F, Ponte C, Santamaria M, Torres A, Fernandez-Roblas R., J. Antimicrob. Chemother. 20(3), 1987
PMID: 3479417
In vitro activity of ciprofloxacin, moxifloxacin, vancomycin and erythromycin against planktonic and biofilm forms of Corynebacterium urealyticum.
Soriano F, Huelves L, Naves P, Rodriguez-Cerrato V, del Prado G, Ruiz V, Ponte C., J. Antimicrob. Chemother. 63(2), 2008
PMID: 19056748
Soriano F, Huelves L, Naves P, Rodriguez-Cerrato V, del Prado G, Ruiz V, Ponte C., J. Antimicrob. Chemother. 63(2), 2008
PMID: 19056748
Skin colonization by Corynebacterium groups D2 and JK in hospitalized patients.
Soriano F, Rodriguez-Tudela JL, Fernandez-Roblas R, Aguado JM, Santamaria M., J. Clin. Microbiol. 26(9), 1988
PMID: 3183031
Soriano F, Rodriguez-Tudela JL, Fernandez-Roblas R, Aguado JM, Santamaria M., J. Clin. Microbiol. 26(9), 1988
PMID: 3183031
Corynebacterium group D2 as a cause of alkaline-encrusted cystitis: report of four cases and characterization of the organisms.
Soriano F, Ponte C, Santamaria M, Aguado JM, Wilhelmi I, Vela R, Delatte LC., J. Clin. Microbiol. 21(5), 1985
PMID: 3998111
Soriano F, Ponte C, Santamaria M, Aguado JM, Wilhelmi I, Vela R, Delatte LC., J. Clin. Microbiol. 21(5), 1985
PMID: 3998111
Antimicrobial susceptibility of Corynebacterium group D2.
Santamaria M, Ponte C, Wilhelmi I, Soriano F., Antimicrob. Agents Chemother. 28(6), 1985
PMID: 4083869
Santamaria M, Ponte C, Wilhelmi I, Soriano F., Antimicrob. Agents Chemother. 28(6), 1985
PMID: 4083869
Corynebacterium urealyticum urinary tract infection in dogs and cats: 7 cases (1996-2003).
Bailiff NL, Westropp JL, Jang SS, Ling GV., J. Am. Vet. Med. Assoc. 226(10), 2005
PMID: 15906567
Bailiff NL, Westropp JL, Jang SS, Ling GV., J. Am. Vet. Med. Assoc. 226(10), 2005
PMID: 15906567
Encrusting cystitis in a cat secondary to Corynebacterium urealyticum infection.
Briscoe KA, Barrs VR, Lindsay S, Hoffmann KL, Cockwill KR, Muscatello G, Beatty JA., J. Feline Med. Surg. 12(12), 2010
PMID: 21041106
Briscoe KA, Barrs VR, Lindsay S, Hoffmann KL, Cockwill KR, Muscatello G, Beatty JA., J. Feline Med. Surg. 12(12), 2010
PMID: 21041106
Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis.
Guimaraes LC, Soares SC, Albersmeier A, Blom J, Jaenicke S, Azevedo V, Soriano F, Tauch A, Trost E., Genome Announc 1(3), 2013
PMID: 23704183
Guimaraes LC, Soares SC, Albersmeier A, Blom J, Jaenicke S, Azevedo V, Soriano F, Tauch A, Trost E., Genome Announc 1(3), 2013
PMID: 23704183
Activity of nine antimicrobial agents against Corynebacterium group D2 strains isolated from clinical specimens and skin.
Fernandez-Roblas R, Prieto S, Santamaria M, Ponte C, Soriano F., Antimicrob. Agents Chemother. 31(5), 1987
PMID: 3606082
Fernandez-Roblas R, Prieto S, Santamaria M, Ponte C, Soriano F., Antimicrob. Agents Chemother. 31(5), 1987
PMID: 3606082
Permeability barrier to hydrophilic solutes in Mycobacterium chelonei.
Jarlier V, Nikaido H., J. Bacteriol. 172(3), 1990
PMID: 2307653
Jarlier V, Nikaido H., J. Bacteriol. 172(3), 1990
PMID: 2307653
PorA represents the major cell wall channel of the Gram-positive bacterium Corynebacterium glutamicum.
Costa-Riu N, Burkovski A, Kramer R, Benz R., J. Bacteriol. 185(16), 2003
PMID: 12896997
Costa-Riu N, Burkovski A, Kramer R, Benz R., J. Bacteriol. 185(16), 2003
PMID: 12896997
Identification and characterization of PorH, a new cell wall channel of Corynebacterium glutamicum.
Hunten P, Costa-Riu N, Palm D, Lottspeich F, Benz R., Biochim. Biophys. Acta 1715(1), 2005
PMID: 16112217
Hunten P, Costa-Riu N, Palm D, Lottspeich F, Benz R., Biochim. Biophys. Acta 1715(1), 2005
PMID: 16112217
PorH, a new channel-forming protein present in the cell wall of Corynebacterium efficiens and Corynebacterium callunae.
Hunten P, Schiffler B, Lottspeich F, Benz R., Microbiology (Reading, Engl.) 151(Pt 7), 2005
PMID: 16000733
Hunten P, Schiffler B, Lottspeich F, Benz R., Microbiology (Reading, Engl.) 151(Pt 7), 2005
PMID: 16000733
Reconstitution experiments and gene deletions reveal the existence of two-component major cell wall channels in the genus Corynebacterium.
Barth E, Barcelo MA, Klackta C, Benz R., J. Bacteriol. 192(3), 2009
PMID: 19966008
Barth E, Barcelo MA, Klackta C, Benz R., J. Bacteriol. 192(3), 2009
PMID: 19966008
Corynebacterium jeikeium jk0268 constitutes for the 40 amino acid long PorACj, which forms a homooligomeric and anion-selective cell wall channel.
Abdali N, Barth E, Norouzy A, Schulz R, Nau WM, Kleinekathofer U, Tauch A, Benz R., PLoS ONE 8(10), 2013
PMID: 24116064
Abdali N, Barth E, Norouzy A, Schulz R, Nau WM, Kleinekathofer U, Tauch A, Benz R., PLoS ONE 8(10), 2013
PMID: 24116064
Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium.
Tauch A, Bischoff N, Puhler A, Kalinowski J., Plasmid 52(2), 2004
PMID: 15336488
Tauch A, Bischoff N, Puhler A, Kalinowski J., Plasmid 52(2), 2004
PMID: 15336488
Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum.
Schafer A, Tauch A, Jager W, Kalinowski J, Thierbach G, Puhler A., Gene 145(1), 1994
PMID: 8045426
Schafer A, Tauch A, Jager W, Kalinowski J, Thierbach G, Puhler A., Gene 145(1), 1994
PMID: 8045426
A heat shock following electroporation induces highly efficient transformation of Corynebacterium glutamicum with xenogeneic plasmid DNA.
van der Rest ME, Lange C, Molenaar D., Appl. Microbiol. Biotechnol. 52(4), 1999
PMID: 10570802
van der Rest ME, Lange C, Molenaar D., Appl. Microbiol. Biotechnol. 52(4), 1999
PMID: 10570802
Biochemical and biophysical characterization of the cell wall porin of Corynebacterium glutamicum: the channel is formed by a low molecular mass polypeptide.
Lichtinger T, Burkovski A, Niederweis M, Kramer R, Benz R., Biochemistry 37(43), 1998
PMID: 9790664
Lichtinger T, Burkovski A, Niederweis M, Kramer R, Benz R., Biochemistry 37(43), 1998
PMID: 9790664
Evidence for a small anion-selective channel in the cell wall of Mycobacterium bovis BCG besides a wide cation-selective pore.
Lichtinger T, Heym B, Maier E, Eichner H, Cole ST, Benz R., FEBS Lett. 454(3), 1999
PMID: 10431837
Lichtinger T, Heym B, Maier E, Eichner H, Cole ST, Benz R., FEBS Lett. 454(3), 1999
PMID: 10431837
Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
Laemmli UK., Nature 227(5259), 1970
PMID: 5432063
Laemmli UK., Nature 227(5259), 1970
PMID: 5432063
Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa.
Schagger H, von Jagow G., Anal. Biochem. 166(2), 1987
PMID: 2449095
Schagger H, von Jagow G., Anal. Biochem. 166(2), 1987
PMID: 2449095
H, Electrophoresis 8(), 1987
Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications.
Towbin H, Staehelin T, Gordon J., Proc. Natl. Acad. Sci. U.S.A. 76(9), 1979
PMID: 388439
Towbin H, Staehelin T, Gordon J., Proc. Natl. Acad. Sci. U.S.A. 76(9), 1979
PMID: 388439
Formation of large, ion-permeable membrane channels by the matrix protein (porin) of Escherichia coli.
Benz R, Janko K, Boos W, Lauger P., Biochim. Biophys. Acta 511(3), 1978
PMID: 356882
Benz R, Janko K, Boos W, Lauger P., Biochim. Biophys. Acta 511(3), 1978
PMID: 356882
Ionic selectivity of pores formed by the matrix protein (porin) of Escherichia coli.
Benz R, Janko K, Lauger P., Biochim. Biophys. Acta 551(2), 1979
PMID: 369608
Benz R, Janko K, Lauger P., Biochim. Biophys. Acta 551(2), 1979
PMID: 369608
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.
Pronk S, Pall S, Schulz R, Larsson P, Bjelkmar P, Apostolov R, Shirts MR, Smith JC, Kasson PM, van der Spoel D, Hess B, Lindahl E., Bioinformatics 29(7), 2013
PMID: 23407358
Pronk S, Pall S, Schulz R, Larsson P, Bjelkmar P, Apostolov R, Shirts MR, Smith JC, Kasson PM, van der Spoel D, Hess B, Lindahl E., Bioinformatics 29(7), 2013
PMID: 23407358
CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies.
Wood CW, Bruning M, Ibarra AA, Bartlett GJ, Thomson AR, Sessions RB, Brady RL, Woolfson DN., Bioinformatics 30(21), 2014
PMID: 25064570
Wood CW, Bruning M, Ibarra AA, Bartlett GJ, Thomson AR, Sessions RB, Brady RL, Woolfson DN., Bioinformatics 30(21), 2014
PMID: 25064570
Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types.
Klauda JB, Venable RM, Freites JA, O'Connor JW, Tobias DJ, Mondragon-Ramirez C, Vorobyov I, MacKerell AD Jr, Pastor RW., J Phys Chem B 114(23), 2010
PMID: 20496934
Klauda JB, Venable RM, Freites JA, O'Connor JW, Tobias DJ, Mondragon-Ramirez C, Vorobyov I, MacKerell AD Jr, Pastor RW., J Phys Chem B 114(23), 2010
PMID: 20496934
Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.
Best RB, Zhu X, Shim J, Lopes PE, Mittal J, Feig M, Mackerell AD Jr., J Chem Theory Comput 8(9), 2012
PMID: 23341755
Best RB, Zhu X, Shim J, Lopes PE, Mittal J, Feig M, Mackerell AD Jr., J Chem Theory Comput 8(9), 2012
PMID: 23341755
AUTHOR UNKNOWN, 0
CHARMM-GUI Membrane Builder for mixed bilayers and its application to yeast membranes.
Jo S, Lim JB, Klauda JB, Im W., Biophys. J. 97(1), 2009
PMID: 19580743
Jo S, Lim JB, Klauda JB, Im W., Biophys. J. 97(1), 2009
PMID: 19580743
SA, Mol Phys 52(), 1984
M, J Appl Phys 52(), 1981
B, J Comput Chem 18(), 1997
Constant electric field simulations of the membrane potential illustrated with simple systems.
Gumbart J, Khalili-Araghi F, Sotomayor M, Roux B., Biochim. Biophys. Acta 1818(2), 2011
PMID: 22001851
Gumbart J, Khalili-Araghi F, Sotomayor M, Roux B., Biochim. Biophys. Acta 1818(2), 2011
PMID: 22001851
Single Residue Acts as Gate in OccK Channels.
Pothula KR, Dhanasekar NN, Lamichhane U, Younas F, Pletzer D, Benz R, Winterhalter M, Kleinekathofer U., J Phys Chem B 121(12), 2017
PMID: 28257208
Pothula KR, Dhanasekar NN, Lamichhane U, Younas F, Pletzer D, Benz R, Winterhalter M, Kleinekathofer U., J Phys Chem B 121(12), 2017
PMID: 28257208
The structure of Staphylococcus aureus alpha-toxin-induced ionic channel.
Krasilnikov OV, Sabirov RZ, Ternovsky VI, Merzliak PG, Tashmukhamedov BA., Gen. Physiol. Biophys. 7(5), 1988
PMID: 2466732
Krasilnikov OV, Sabirov RZ, Ternovsky VI, Merzliak PG, Tashmukhamedov BA., Gen. Physiol. Biophys. 7(5), 1988
PMID: 2466732
OV, FEMS Microbiol Immunol 5(1–3), 1992
Partitioning of differently sized poly(ethylene glycol)s into OmpF porin.
Rostovtseva TK, Nestorovich EM, Bezrukov SM., Biophys. J. 82(1 Pt 1), 2002
PMID: 11751305
Rostovtseva TK, Nestorovich EM, Bezrukov SM., Biophys. J. 82(1 Pt 1), 2002
PMID: 11751305
Through pore diameter in the cell wall of Chara corallina.
Berestovsky GN, Ternovsky VI, Kataev AA., J. Exp. Bot. 52(359), 2001
PMID: 11432935
Berestovsky GN, Ternovsky VI, Kataev AA., J. Exp. Bot. 52(359), 2001
PMID: 11432935
Sizing the pore of the volume-sensitive anion channel by differential polymer partitioning.
Ternovsky VI, Okada Y, Sabirov RZ., FEBS Lett. 576(3), 2004
PMID: 15498575
Ternovsky VI, Okada Y, Sabirov RZ., FEBS Lett. 576(3), 2004
PMID: 15498575
Sizing of an ion pore by access resistance measurements.
Vodyanoy I, Bezrukov SM., Biophys. J. 62(1), 1992
PMID: 1376161
Vodyanoy I, Bezrukov SM., Biophys. J. 62(1), 1992
PMID: 1376161
Relation between ionic channel conductance and conductivity of media containing different nonelectrolytes. A novel method of pore size determination.
Sabirov RZ, Krasilnikov OV, Ternovsky VI, Merzliak PG., Gen. Physiol. Biophys. 12(2), 1993
PMID: 7691679
Sabirov RZ, Krasilnikov OV, Ternovsky VI, Merzliak PG., Gen. Physiol. Biophys. 12(2), 1993
PMID: 7691679
Identification of an anion-specific channel in the cell wall of the Gram-positive bacterium Corynebacterium glutamicum.
Costa-Riu N, Maier E, Burkovski A, Kramer R, Lottspeich F, Benz R., Mol. Microbiol. 50(4), 2003
PMID: 14622416
Costa-Riu N, Maier E, Burkovski A, Kramer R, Lottspeich F, Benz R., Mol. Microbiol. 50(4), 2003
PMID: 14622416
Biochemical identification and biophysical characterization of a channel-forming protein from Rhodococcus erythropolis.
Lichtinger T, Reiss G, Benz R., J. Bacteriol. 182(3), 2000
PMID: 10633112
Lichtinger T, Reiss G, Benz R., J. Bacteriol. 182(3), 2000
PMID: 10633112
Corynebacterium diphtheriae: identification and characterization of a channel-forming protein in the cell wall.
Schiffler B, Barth E, Daffe M, Benz R., J. Bacteriol. 189(21), 2007
PMID: 17720794
Schiffler B, Barth E, Daffe M, Benz R., J. Bacteriol. 189(21), 2007
PMID: 17720794
Discovery of a cell wall porin in the mycolic-acid-containing actinomycete Dietzia maris DSM 43672.
Mafakheri S, Barcena-Uribarri I, Abdali N, Jones AL, Sutcliffe IC, Benz R., FEBS J. 281(8), 2014
PMID: 24707935
Mafakheri S, Barcena-Uribarri I, Abdali N, Jones AL, Sutcliffe IC, Benz R., FEBS J. 281(8), 2014
PMID: 24707935
A putative alpha-helical porin from Corynebacterium glutamicum.
Ziegler K, Benz R, Schulz GE., J. Mol. Biol. 379(3), 2008
PMID: 18462756
Ziegler K, Benz R, Schulz GE., J. Mol. Biol. 379(3), 2008
PMID: 18462756
On the design of supramolecular assemblies made of peptides and lipid bilayers.
Kemayo Koumkoua P, Aisenbrey C, Salnikov E, Rifi O, Bechinger B., J. Pept. Sci. 20(7), 2014
PMID: 24909405
Kemayo Koumkoua P, Aisenbrey C, Salnikov E, Rifi O, Bechinger B., J. Pept. Sci. 20(7), 2014
PMID: 24909405
Model Membrane and Cell Studies of Antimicrobial Activity of Melittin Analogues.
Jamasbi E, Mularski A, Separovic F., Curr Top Med Chem 16(1), 2016
PMID: 26139117
Jamasbi E, Mularski A, Separovic F., Curr Top Med Chem 16(1), 2016
PMID: 26139117
Structural variations of the cell wall precursor lipid II in Gram-positive bacteria - Impact on binding and efficacy of antimicrobial peptides.
Munch D, Sahl HG., Biochim. Biophys. Acta 1848(11 Pt B), 2015
PMID: 25934055
Munch D, Sahl HG., Biochim. Biophys. Acta 1848(11 Pt B), 2015
PMID: 25934055
Chemical principles in the organization of lipid components in the mycobacterial cell envelope.
Minnikin DE., Res. Microbiol. 142(4), 1991
PMID: 1871427
Minnikin DE., Res. Microbiol. 142(4), 1991
PMID: 1871427
Phylogenetic analysis of mycolic acid-containing wall-chemotype IV actinomycetes and allied taxa by partial sequencing of ribosomal protein AT-L30.
Ochi K., Int. J. Syst. Bacteriol. 45(4), 1995
PMID: 7547284
Ochi K., Int. J. Syst. Bacteriol. 45(4), 1995
PMID: 7547284
Cloning of the mspA gene encoding a porin from Mycobacterium smegmatis.
Niederweis M, Ehrt S, Heinz C, Klocker U, Karosi S, Swiderek KM, Riley LW, Benz R., Mol. Microbiol. 33(5), 1999
PMID: 10476028
Niederweis M, Ehrt S, Heinz C, Klocker U, Karosi S, Swiderek KM, Riley LW, Benz R., Mol. Microbiol. 33(5), 1999
PMID: 10476028
Study of the properties of a channel-forming protein of the cell wall of the gram-positive bacterium Mycobacterium phlei.
Riess FG, Dorner U, Schiffler B, Benz R., J. Membr. Biol. 182(2), 2001
PMID: 11447506
Riess FG, Dorner U, Schiffler B, Benz R., J. Membr. Biol. 182(2), 2001
PMID: 11447506
Identification of a cation-specific channel (TipA) in the cell wall of the gram-positive mycolata Tsukamurella inchonensis: the gene of the channel-forming protein is identical to mspA of Mycobacterium smegmatis and mppA of Mycobacterium phlei.
Dorner U, Maier E, Benz R., Biochim. Biophys. Acta 1667(1), 2004
PMID: 15533305
Dorner U, Maier E, Benz R., Biochim. Biophys. Acta 1667(1), 2004
PMID: 15533305
Hetero-oligomeric cell wall channels (porins) of Nocardia farcinica.
Klackta C, Knorzer P, Riess F, Benz R., Biochim. Biophys. Acta 1808(6), 2010
PMID: 21092733
Klackta C, Knorzer P, Riess F, Benz R., Biochim. Biophys. Acta 1808(6), 2010
PMID: 21092733
Identification and characterization of the channel-forming protein in the cell wall of Corynebacterium amycolatum.
Soltan Mohammadi N, Mafakheri S, Abdali N, Barcena-Uribarri I, Tauch A, Benz R., Biochim. Biophys. Acta 1828(11), 2013
PMID: 23811360
Soltan Mohammadi N, Mafakheri S, Abdali N, Barcena-Uribarri I, Tauch A, Benz R., Biochim. Biophys. Acta 1828(11), 2013
PMID: 23811360
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL., Genome Biol. 8(2), 2007
PMID: 17313685
Kingsford CL, Ayanbule K, Salzberg SL., Genome Biol. 8(2), 2007
PMID: 17313685
A simple method for displaying the hydropathic character of a protein.
Kyte J, Doolittle RF., J. Mol. Biol. 157(1), 1982
PMID: 7108955
Kyte J, Doolittle RF., J. Mol. Biol. 157(1), 1982
PMID: 7108955
Phylogeny.fr: robust phylogenetic analysis for the non-specialist.
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O., Nucleic Acids Res. 36(Web Server issue), 2008
PMID: 18424797
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O., Nucleic Acids Res. 36(Web Server issue), 2008
PMID: 18424797
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 29743008
PubMed | Europe PMC
Suchen in