On the causes of outliers in Affymetrix GeneChip data
Upton GJG, Sanchez Graillet O, Rowsell J, Arteaga-Salas JM, Graham NS, Stalteri MA, Memon FN, May ST, Harrison AP (2009)
Briefings in functional genomics and proteomics 8(3): 199--212.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Autor*in
Upton, Graham JG;
Sanchez Graillet, OliviaUniBi 
;
Rowsell, Joanna;
Arteaga-Salas, Jose M;
Graham, Neil S;
Stalteri, Maria A;
Memon, Farhat N;
May, Sean T;
Harrison, Andrew P
;
Rowsell, Joanna;
Arteaga-Salas, Jose M;
Graham, Neil S;
Stalteri, Maria A;
Memon, Farhat N;
May, Sean T;
Harrison, Andrew PEinrichtung
Abstract / Bemerkung
We describe various types of outliers seen in Affymetrix GeneChip data. We have been able to utilise the data in the Gene Expression Omnibus to screen GeneChips across a range of scales, from single probes, to spatially adjacent fractions of arrays, to whole arrays, to whole experiments. In this review we describe a number of causes for why some reported intensities might be misleading on GeneChips.
Erscheinungsjahr
2009
Zeitschriftentitel
Briefings in functional genomics and proteomics
Band
8
Ausgabe
3
Seite(n)
199--212
eISSN
1477-4062
Page URI
https://pub.uni-bielefeld.de/record/2920011
Zitieren
Upton GJG, Sanchez Graillet O, Rowsell J, et al. On the causes of outliers in Affymetrix GeneChip data. Briefings in functional genomics and proteomics. 2009;8(3):199--212.
Upton, G. J. G., Sanchez Graillet, O., Rowsell, J., Arteaga-Salas, J. M., Graham, N. S., Stalteri, M. A., Memon, F. N., et al. (2009). On the causes of outliers in Affymetrix GeneChip data. Briefings in functional genomics and proteomics, 8(3), 199--212. doi:10.1093/bfgp/elp027
Upton, Graham JG, Sanchez Graillet, Olivia, Rowsell, Joanna, Arteaga-Salas, Jose M, Graham, Neil S, Stalteri, Maria A, Memon, Farhat N, May, Sean T, and Harrison, Andrew P. 2009. “On the causes of outliers in Affymetrix GeneChip data”. Briefings in functional genomics and proteomics 8 (3): 199--212.
Upton, G. J. G., Sanchez Graillet, O., Rowsell, J., Arteaga-Salas, J. M., Graham, N. S., Stalteri, M. A., Memon, F. N., May, S. T., and Harrison, A. P. (2009). On the causes of outliers in Affymetrix GeneChip data. Briefings in functional genomics and proteomics 8, 199--212.
Upton, G.J.G., et al., 2009. On the causes of outliers in Affymetrix GeneChip data. Briefings in functional genomics and proteomics, 8(3), p 199--212.
G.J.G. Upton, et al., “On the causes of outliers in Affymetrix GeneChip data”, Briefings in functional genomics and proteomics, vol. 8, 2009, pp. 199--212.
Upton, G.J.G., Sanchez Graillet, O., Rowsell, J., Arteaga-Salas, J.M., Graham, N.S., Stalteri, M.A., Memon, F.N., May, S.T., Harrison, A.P.: On the causes of outliers in Affymetrix GeneChip data. Briefings in functional genomics and proteomics. 8, 199--212 (2009).
Upton, Graham JG, Sanchez Graillet, Olivia, Rowsell, Joanna, Arteaga-Salas, Jose M, Graham, Neil S, Stalteri, Maria A, Memon, Farhat N, May, Sean T, and Harrison, Andrew P. “On the causes of outliers in Affymetrix GeneChip data”. Briefings in functional genomics and proteomics 8.3 (2009): 199--212.
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