BARLEX – the Barley Draft Genome Explorer

Colmsee C, Beier S, Himmelbach A, Schmutzer T, Stein N, Scholz U, Mascher M (2015)
Molecular Plant 8(6): 964-966.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Colmsee, Christian; Beier, Sebastian; Himmelbach, Axel; Schmutzer, Thomas; Stein, Nils; Scholz, Uwe; Mascher, Martin
Erscheinungsjahr
2015
Zeitschriftentitel
Molecular Plant
Band
8
Ausgabe
6
Seite(n)
964-966
ISSN
1674-2052
Page URI
https://pub.uni-bielefeld.de/record/2918702

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Colmsee C, Beier S, Himmelbach A, et al. BARLEX – the Barley Draft Genome Explorer. Molecular Plant. 2015;8(6):964-966.
Colmsee, C., Beier, S., Himmelbach, A., Schmutzer, T., Stein, N., Scholz, U., & Mascher, M. (2015). BARLEX – the Barley Draft Genome Explorer. Molecular Plant, 8(6), 964-966. doi:10.1016/j.molp.2015.03.009
Colmsee, C., Beier, S., Himmelbach, A., Schmutzer, T., Stein, N., Scholz, U., and Mascher, M. (2015). BARLEX – the Barley Draft Genome Explorer. Molecular Plant 8, 964-966.
Colmsee, C., et al., 2015. BARLEX – the Barley Draft Genome Explorer. Molecular Plant, 8(6), p 964-966.
C. Colmsee, et al., “BARLEX – the Barley Draft Genome Explorer”, Molecular Plant, vol. 8, 2015, pp. 964-966.
Colmsee, C., Beier, S., Himmelbach, A., Schmutzer, T., Stein, N., Scholz, U., Mascher, M.: BARLEX – the Barley Draft Genome Explorer. Molecular Plant. 8, 964-966 (2015).
Colmsee, Christian, Beier, Sebastian, Himmelbach, Axel, Schmutzer, Thomas, Stein, Nils, Scholz, Uwe, and Mascher, Martin. “BARLEX – the Barley Draft Genome Explorer”. Molecular Plant 8.6 (2015): 964-966.

23 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Fine mapping of Rha2 in barley reveals candidate genes for resistance against cereal cyst nematode.
Van Gansbeke B, Khoo KHP, Lewis JG, Chalmers KJ, Mather DE., Theor Appl Genet 132(5), 2019
PMID: 30656354
High Resolution Genetic and Physical Mapping of a Major Powdery Mildew Resistance Locus in Barley.
Hoseinzadeh P, Zhou R, Mascher M, Himmelbach A, Niks RE, Schweizer P, Stein N., Front Plant Sci 10(), 2019
PMID: 30838011
Genome-wide association mapping in a diverse spring barley collection reveals the presence of QTL hotspots and candidate genes for root and shoot architecture traits at seedling stage.
Abdel-Ghani AH, Sharma R, Wabila C, Dhanagond S, Owais SJ, Duwayri MA, Al-Dalain SA, Klukas C, Chen D, Lübberstedt T, von Wirén N, Graner A, Kilian B, Neumann K., BMC Plant Biol 19(1), 2019
PMID: 31122195
A single nucleotide polymorphism in the "Fra" gene results in fractured starch granules in barley.
Saito M, Tanaka T, Sato K, Vrinten P, Nakamura T., Theor Appl Genet 131(2), 2018
PMID: 29098311
Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress.
Kochevenko A, Jiang Y, Seiler C, Surdonja K, Kollers S, Reif JC, Korzun V, Graner A., BMC Plant Biol 18(1), 2018
PMID: 29866039
Genome-wide identification, characterization, and evolutionary analysis of NBS-encoding resistance genes in barley.
Habachi-Houimli Y, Khalfallah Y, Mezghani-Khemakhem M, Makni H, Makni M, Bouktila D., 3 Biotech 8(11), 2018
PMID: 30370194
A chromosome conformation capture ordered sequence of the barley genome.
Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N., Nature 544(7651), 2017
PMID: 28447635
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M., Sci Data 4(), 2017
PMID: 28448065
Leaf primordium size specifies leaf width and vein number among row-type classes in barley.
Thirulogachandar V, Alqudah AM, Koppolu R, Rutten T, Graner A, Hensel G, Kumlehn J, Bräutigam A, Sreenivasulu N, Schnurbusch T, Kuhlmann M., Plant J 91(4), 2017
PMID: 28482117
Genetic architecture and temporal patterns of biomass accumulation in spring barley revealed by image analysis.
Neumann K, Zhao Y, Chu J, Keilwagen J, Reif JC, Kilian B, Graner A., BMC Plant Biol 17(1), 2017
PMID: 28797222
Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.
Beier S, Himmelbach A, Schmutzer T, Felder M, Taudien S, Mayer KF, Platzer M, Stein N, Scholz U, Mascher M., Plant Biotechnol J 14(7), 2016
PMID: 26801048
Fine mapping of barley locus Rps6 conferring resistance to wheat stripe rust.
Li K, Hegarty J, Zhang C, Wan A, Wu J, Guedira GB, Chen X, Muñoz-Amatriaín M, Fu D, Dubcovsky J., Theor Appl Genet 129(4), 2016
PMID: 26875072
The Cer-cqu gene cluster determines three key players in a β-diketone synthase polyketide pathway synthesizing aliphatics in epicuticular waxes.
Schneider LM, Adamski NM, Christensen CE, Stuart DB, Vautrin S, Hansson M, Uauy C, von Wettstein-Knowles P., J Exp Bot (), 2016
PMID: 26962211
The evolutionary origin of CIPK16: A gene involved in enhanced salt tolerance.
Amarasinghe S, Watson-Haigh NS, Gilliham M, Roy S, Baumann U., Mol Phylogenet Evol 100(), 2016
PMID: 27044608
Molecular and genetic characterization of barley mutants and genetic mapping of mutant rpr2 required for Rpg1-mediated resistance against stem rust.
Gill U, Brueggeman R, Nirmala J, Chai Y, Steffenson B, Kleinhofs A., Theor Appl Genet 129(8), 2016
PMID: 27142847
Regulation of the Flavonoid Biosynthesis Pathway Genes in Purple and Black Grains of Hordeum vulgare.
Shoeva OY, Mock HP, Kukoeva TV, Börner A, Khlestkina EK., PLoS One 11(10), 2016
PMID: 27706214
Rapid gene isolation in barley and wheat by mutant chromosome sequencing.
Sánchez-Martín J, Steuernagel B, Ghosh S, Herren G, Hurni S, Adamski N, Vrána J, Kubaláková M, Krattinger SG, Wicker T, Doležel J, Keller B, Wulff BB., Genome Biol 17(1), 2016
PMID: 27795210
Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H.
Aliyeva-Schnorr L, Beier S, Karafiátová M, Schmutzer T, Scholz U, Doležel J, Stein N, Houben A., Plant J 84(2), 2015
PMID: 26332657
The Relationships between Development and Low Temperature Tolerance in Barley Near Isogenic Lines Differing for Flowering Behavior.
Cuesta-Marcos A, Muñoz-Amatriaín M, Filichkin T, Karsai I, Trevaskis B, Yasuda S, Hayes P, Sato K., Plant Cell Physiol 56(12), 2015
PMID: 26443377

10 References

Daten bereitgestellt von Europe PubMed Central.

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.
Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley PE, Muehlbauer GJ, Scholz U, Korol A, Mayer KF, Waugh R, Langridge P, Graner A, Stein N., Plant Physiol. 164(1), 2013
PMID: 24243933
Structural and functional partitioning of bread wheat chromosome 3B.
Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis J, Balfourier F, Alaux M, Jamilloux V, Poulain J, Durand C, Bellec A, Gaspin C, Safar J, Dolezel J, Rogers J, Vandepoele K, Aury JM, Mayer K, Berges H, Quesneville H, Wincker P, Feuillet C., Science 345(6194), 2014
PMID: 25035497
Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley.
Comadran J, Kilian B, Russell J, Ramsay L, Stein N, Ganal M, Shaw P, Bayer M, Thomas W, Marshall D, Hedley P, Tondelli A, Pecchioni N, Francia E, Korzun V, Walther A, Waugh R., Nat. Genet. 44(12), 2012
PMID: 23160098
A physical, genetic and functional sequence assembly of the barley genome.
International Barley Genome Sequencing Consortium, Mayer KF, Waugh R, Brown JW, Schulman A, Langridge P, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Close TJ, Wise RP, Stein N, Mayer KF, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ, Stein N, Ariyadasa R, Schulte D, Poursarebani N, Zhou R, Steuernagel B, Mascher M, Scholz U, Shi B, Langridge P, Madishetty K, Svensson JT, Bhat P, Moscou M, Resnik J, Close TJ, Muehlbauer GJ, Hedley P, Liu H, Morris J, Waugh R, Frenkel Z, Korol A, Berges H, Graner A, Stein N, Steuernagel B, Scholz U, Taudien S, Felder M, Groth M, Platzer M, Stein N, Steuernagel B, Scholz U, Himmelbach A, Taudien S, Felder M, Platzer M, Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Ciardo G, Ma Y, Wanamaker S, Close TJ, Stein N, Cattonaro F, Vendramin V, Scalabrin S, Radovic S, Wing R, Schulte D, Steuernagel B, Morgante M, Stein N, Waugh R, Nussbaumer T, Gundlach H, Martis M, Ariyadasa R, Poursarebani N, Steuernagel B, Scholz U, Wise RP, Poland J, Stein N, Mayer KF, Spannagl M, Pfeifer M, Gundlach H, Mayer KF, Gundlach H, Moisy C, Tanskanen J, Scalabrin S, Zuccolo A, Vendramin V, Morgante M, Schulman A, Pfeifer M, Spannagl M, Hedley P, Morris J, Russell J, Druka A, Marshall D, Bayer M, Swarbreck D, Sampath D, Ayling S, Febrer M, Caccamo M, Matsumoto T, Tanaka T, Sato K, Wise RP, Close TJ, Wannamaker S, Muehlbauer GJ, Stein N, Waugh R, Steuernagel B, Schmutzer T, Mascher M, Scholz U, Taudien S, Platzer M, Sato K, Marshall D, Bayer M, Waugh R, Stein N., Nature 491(7426), 2012
PMID: 23075845
Cytoscape Web: an interactive web-based network browser.
Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD., Bioinformatics 26(18), 2010
PMID: 20656902
Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).
Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Munoz-Amatriain M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, Waugh R., Plant J. 76(4), 2013
PMID: 23998490
Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.
Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N., Plant J. 76(3), 2013
PMID: 23889683
The generic genome browser: a building block for a model organism system database.
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S., Genome Res. 12(10), 2002
PMID: 12368253
Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping.
Wang X, Kudrna DA, Pan Y, Wang H, Liu L, Lin H, Zhang J, Song X, Goicoechea JL, Wing RA, Zhang Q, Luo M., Genetics 196(4), 2014
PMID: 24424778
PROTEIN DISULFIDE ISOMERASE LIKE 5-1 is a susceptibility factor to plant viruses.
Yang P, Lupken T, Habekuss A, Hensel G, Steuernagel B, Kilian B, Ariyadasa R, Himmelbach A, Kumlehn J, Scholz U, Ordon F, Stein N., Proc. Natl. Acad. Sci. U.S.A. 111(6), 2014
PMID: 24481254
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