Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees

Edwards KD, Takata N, Johansson M, Jurca M, Novák O, Hényková E, Liverani S, Kozarewa I, Strnad M, Millar AJ, Ljung K, et al. (2018)
Plant, Cell & Environment 41(6): 1468-1482.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Edwards, Kieron D.; Takata, Naoki; Johansson, MikaelUniBi; Jurca, Manuela; Novák, Ondřej; Hényková, Eva; Liverani, Silvia; Kozarewa, Iwanka; Strnad, Miroslav; Millar, Andrew J.; Ljung, Karin; Eriksson, Maria E.
Einrichtung
Fakultät für Biologie > RNA Biologie und Molekulare Physiologie
Erscheinungsjahr
2018
Zeitschriftentitel
Plant, Cell & Environment
Band
41
Ausgabe
6
Seite(n)
1468-1482
Urheberrecht / Lizenzen
Creative Commons Namensnennung 4.0 International Public License (CC-BY 4.0)
ISSN
0140-7791
Page URI
https://pub.uni-bielefeld.de/record/2918696

Zitieren

Edwards KD, Takata N, Johansson M, et al. Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees. Plant, Cell & Environment. 2018;41(6):1468-1482.
Edwards, K. D., Takata, N., Johansson, M., Jurca, M., Novák, O., Hényková, E., Liverani, S., et al. (2018). Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees. Plant, Cell & Environment, 41(6), 1468-1482. doi:10.1111/pce.13185
Edwards, Kieron D., Takata, Naoki, Johansson, Mikael, Jurca, Manuela, Novák, Ondřej, Hényková, Eva, Liverani, Silvia, et al. 2018. “Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees”. Plant, Cell & Environment 41 (6): 1468-1482.
Edwards, K. D., Takata, N., Johansson, M., Jurca, M., Novák, O., Hényková, E., Liverani, S., Kozarewa, I., Strnad, M., Millar, A. J., et al. (2018). Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees. Plant, Cell & Environment 41, 1468-1482.
Edwards, K.D., et al., 2018. Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees. Plant, Cell & Environment, 41(6), p 1468-1482.
K.D. Edwards, et al., “Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees”, Plant, Cell & Environment, vol. 41, 2018, pp. 1468-1482.
Edwards, K.D., Takata, N., Johansson, M., Jurca, M., Novák, O., Hényková, E., Liverani, S., Kozarewa, I., Strnad, M., Millar, A.J., Ljung, K., Eriksson, M.E.: Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees. Plant, Cell & Environment. 41, 1468-1482 (2018).
Edwards, Kieron D., Takata, Naoki, Johansson, Mikael, Jurca, Manuela, Novák, Ondřej, Hényková, Eva, Liverani, Silvia, Kozarewa, Iwanka, Strnad, Miroslav, Millar, Andrew J., Ljung, Karin, and Eriksson, Maria E. “Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees”. Plant, Cell & Environment 41.6 (2018): 1468-1482.

2 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

QTL Underlying Circadian Clock Parameters Under Seasonally Variable Field Settings in Arabidopsis thaliana.
Rubin MJ, Brock MT, Davis SJ, Weinig C., G3 (Bethesda) 9(4), 2019
PMID: 30755409
Cytokinin at the Crossroads of Abiotic Stress Signalling Pathways.
Pavlů J, Novák J, Koukalová V, Luklová M, Brzobohatý B, Černý M., Int J Mol Sci 19(8), 2018
PMID: 30126242

77 References

Daten bereitgestellt von Europe PubMed Central.

Revised Morning Loops of the Arabidopsis Circadian Clock Based on Analyses of Direct Regulatory Interactions.
Adams S, Manfield I, Stockley P, Carre IA., PLoS ONE 10(12), 2015
PMID: 26625126
Fitting linear mixed‐effects models using lme4
AUTHOR UNKNOWN, 2015
Auxin gradients across wood-instructive or incidental?
Bhalerao RP, Fischer U., Physiol Plant 151(1), 2013
PMID: 24286229
Circadian G2 arrest as related to circadian gating of cell population growth in Euglena.
Bolige A, Hagiwara SY, Zhang Y, Goto K., Plant Cell Physiol. 46(6), 2005
PMID: 15821024
A general bilinear model to describe growth or decline time profiles.
Buchwald P., Math Biosci 205(1), 2006
PMID: 17027039
A simple and efficient method for isolating RNA from pine trees
AUTHOR UNKNOWN, 1993
The circadian clock regulates auxin signaling and responses in Arabidopsis.
Covington MF, Harmer SL., PLoS Biol. 5(8), 2007
PMID: 17683202
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service.
Craigon DJ, James N, Okyere J, Higgins J, Jotham J, May S., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681484
Arabidopsis CYCD3 D-type cyclins link cell proliferation and endocycles and are rate-limiting for cytokinin responses.
Dewitte W, Scofield S, Alcasabas AA, Maughan SC, Menges M, Braun N, Collins C, Nieuwland J, Prinsen E, Sundaresan V, Murray JA., Proc. Natl. Acad. Sci. U.S.A. 104(36), 2007
PMID: 17726100
Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage.
Dodd AN, Salathia N, Hall A, Kevei E, Toth R, Nagy F, Hibberd JM, Millar AJ, Webb AA., Science 309(5734), 2005
PMID: 16040710
The Populus Class III HD ZIP transcription factor POPCORONA affects cell differentiation during secondary growth of woody stems.
Du J, Miura E, Robischon M, Martinez C, Groover A., PLoS ONE 6(2), 2011
PMID: 21386988
agriGO: a GO analysis toolkit for the agricultural community.
Du Z, Zhou X, Ling Y, Zhang Z, Su Z., Nucleic Acids Res. 38(Web Server issue), 2010
PMID: 20435677
Quantitative analysis of regulatory flexibility under changing environmental conditions.
Edwards KD, Akman OE, Knox K, Lumsden PJ, Thomson AW, Brown PE, Pokhilko A, Kozma-Bognar L, Nagy F, Rand DA, Millar AJ., Mol. Syst. Biol. 6(), 2010
PMID: 21045818
FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock.
Edwards KD, Anderson PE, Hall A, Salathia NS, Locke JC, Lynn JR, Straume M, Smith JQ, Millar AJ., Plant Cell 18(3), 2006
PMID: 16473970
Increased gibberellin biosynthesis in transgenic trees promotes growth, biomass production and xylem fiber length.
Eriksson ME, Israelsson M, Olsson O, Moritz T., Nat. Biotechnol. 18(7), 2000
PMID: 10888850
Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle.
Feillet C, Krusche P, Tamanini F, Janssens RC, Downey MJ, Martin P, Teboul M, Saito S, Levi FA, Bretschneider T, van der Horst GT, Delaunay F, Rand DA., Proc. Natl. Acad. Sci. U.S.A. 111(27), 2014
PMID: 24958884
Rethinking transcriptional activation in the Arabidopsis circadian clock.
Fogelmark K, Troein C., PLoS Comput. Biol. 10(7), 2014
PMID: 25033214
The Medicago CDKC;1-CYCLINT;1 kinase complex phosphorylates the carboxy-terminal domain of RNA polymerase II and promotes transcription.
Fulop K, Pettko-Szandtner A, Magyar Z, Miskolczi P, Kondorosi E, Dudits D, Bako L., Plant J. 42(6), 2005
PMID: 15941395
Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor.
Gendron JM, Pruneda-Paz JL, Doherty CJ, Gross AM, Kang SE, Kay SA., Proc. Natl. Acad. Sci. U.S.A. 109(8), 2012
PMID: 22315425
Circadian control of carbohydrate availability for growth in Arabidopsis plants at night.
Graf A, Schlereth A, Stitt M, Smith AM., Proc. Natl. Acad. Sci. U.S.A. 107(20), 2010
PMID: 20439704
Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection.
Graham NS, Broadley MR, Hammond JP, White PJ, May ST., BMC Genomics 8(), 2007
PMID: 17908303
Circadian rhythms confer a higher level of fitness to Arabidopsis plants.
Green RM, Tingay S, Wang ZY, Tobin EM., Plant Physiol. 129(2), 2002
PMID: 12068102
Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species.
Hammond JP, Broadley MR, Craigon DJ, Higgins J, Emmerson ZF, Townsend HJ, White PJ, May ST., Plant Methods 1(1), 2005
PMID: 16280083
Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.
Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA., Science 290(5499), 2000
PMID: 11118138
Photosynthetic entrainment of the Arabidopsis thaliana circadian clock.
Haydon MJ, Mielczarek O, Robertson FC, Hubbard KE, Webb AA., Nature 502(7473), 2013
PMID: 24153186
A quantitative study of gene regulation involved in the immune response of Anopheline mosquitoes
AUTHOR UNKNOWN, 2006

AUTHOR UNKNOWN, 2014
AtGRP7, a nuclear RNA-binding protein as a component of a circadian-regulated negative feedback loop in Arabidopsis thaliana.
Heintzen C, Nater M, Apel K, Staiger D., Proc. Natl. Acad. Sci. U.S.A. 94(16), 1997
PMID: 9238008
A transcriptional roadmap to wood formation.
Hertzberg M, Aspeborg H, Schrader J, Andersson A, Erlandsson R, Blomqvist K, Bhalerao R, Uhlen M, Teeri TT, Lundeberg J, Sundberg B, Nilsson P, Sandberg G., Proc. Natl. Acad. Sci. U.S.A. 98(25), 2001
PMID: 11724959
BBX32, an Arabidopsis B-Box protein, functions in light signaling by suppressing HY5-regulated gene expression and interacting with STH2/BBX21.
Holtan HE, Bandong S, Marion CM, Adam L, Tiwari S, Shen Y, Maloof JN, Maszle DR, Ohto MA, Preuss S, Meister R, Petracek M, Repetti PP, Reuber TL, Ratcliffe OJ, Khanna R., Plant Physiol. 156(4), 2011
PMID: 21632973
Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator.
Huang W, Perez-Garcia P, Pokhilko A, Millar AJ, Antoshechkin I, Riechmann JL, Mas P., Science 336(6077), 2012
PMID: 22403178
Circadian clock components regulate entry and affect exit of seasonal dormancy as well as winter hardiness in Populus trees.
Ibanez C, Kozarewa I, Johansson M, Ogren E, Rohde A, Eriksson ME., Plant Physiol. 153(4), 2010
PMID: 20530613
Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity.
Immanen J, Nieminen K, Smolander OP, Kojima M, Alonso Serra J, Koskinen P, Zhang J, Elo A, Mahonen AP, Street N, Bhalerao RP, Paulin L, Auvinen P, Sakakibara H, Helariutta Y., Curr. Biol. 26(15), 2016
PMID: 27426519
Changes in gene expression in the wood-forming tissue of transgenic hybrid aspen with increased secondary growth.
Israelsson M, Eriksson ME, Hertzberg M, Aspeborg H, Nilsson P, Moritz T., Plant Mol. Biol. 52(4), 2003
PMID: 13677475
Partners in time: EARLY BIRD associates with ZEITLUPE and regulates the speed of the Arabidopsis clock.
Johansson M, McWatters HG, Bako L, Takata N, Gyula P, Hall A, Somers DE, Millar AJ, Eriksson ME., Plant Physiol. 155(4), 2011
PMID: 21300918
Direct Repression of Evening Genes by CIRCADIAN CLOCK-ASSOCIATED1 in the Arabidopsis Circadian Clock.
Kamioka M, Takao S, Suzuki T, Taki K, Higashiyama T, Kinoshita T, Nakamichi N., Plant Cell 28(3), 2016
PMID: 26941090
Short day-mediated cessation of growth requires the downregulation of AINTEGUMENTALIKE1 transcription factor in hybrid aspen.
Karlberg A, Bako L, Bhalerao RP., PLoS Genet. 7(11), 2011
PMID: 22072988
Sensitive to freezing6 integrates cellular and environmental inputs to the plant circadian clock.
Knight H, Thomson AJ, McWatters HG., Plant Physiol. 148(1), 2008
PMID: 18614706
Alteration of PHYA expression change circadian rhythms and timing of bud set in Populus.
Kozarewa I, Ibanez C, Johansson M, Ogren E, Mozley D, Nylander E, Chono M, Moritz T, Eriksson ME., Plant Mol. Biol. 73(1-2), 2010
PMID: 20229130
Efficient utility‐based clustering over high dimensional partition spaces
AUTHOR UNKNOWN, 2009
Ethylene is an endogenous stimulator of cell division in the cambial meristem of Populus.
Love J, Bjorklund S, Vahala J, Hertzberg M, Kangasjarvi J, Sundberg B., Proc. Natl. Acad. Sci. U.S.A. 106(14), 2009
PMID: 19293381
Nocturnal changes in leaf growth of Populus deltoides are controlled by cytoplasmic growth.
Matsubara S, Hurry V, Druart N, Benedict C, Janzik I, Chavarria-Krauser A, Walter A, Schurr U., Planta 223(6), 2005
PMID: 16333638
Control mechanism of the circadian clock for timing of cell division in vivo.
Matsuo T, Yamaguchi S, Mitsui S, Emi A, Shimoda F, Okamura H., Science 302(5643), 2003
PMID: 12934012
The D-type cyclin CYCD3;1 is limiting for the G1-to-S-phase transition in Arabidopsis.
Menges M, Samland AK, Planchais S, Murray JA., Plant Cell 18(4), 2006
PMID: 16517759
The Intracellular Dynamics of Circadian Clocks Reach for the Light of Ecology and Evolution.
Millar AJ., Annu Rev Plant Biol 67(), 2015
PMID: 26653934
Topolins and hydroxylated thidiazuron derivatives are substrates of cytokinin O-glucosyltransferase with position specificity related to receptor recognition.
Mok MC, Martin RC, Dobrev PI, Vankova R, Ho PS, Yonekura-Sakakibara K, Sakakibara H, Mok DW., Plant Physiol. 137(3), 2005
PMID: 15728338
Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours.
Mori T, Binder B, Johnson CH., Proc. Natl. Acad. Sci. U.S.A. 93(19), 1996
PMID: 8816773
Cytokinin signaling regulates cambial development in poplar.
Nieminen K, Immanen J, Laxell M, Kauppinen L, Tarkowski P, Dolezal K, Tahtiharju S, Elo A, Decourteix M, Ljung K, Bhalerao R, Keinonen K, Albert VA, Helariutta Y., Proc. Natl. Acad. Sci. U.S.A. 105(50), 2008
PMID: 19064928
Lignin and biomass: a negative correlation for wood formation and lignin content in trees.
Novaes E, Kirst M, Chiang V, Winter-Sederoff H, Sederoff R., Plant Physiol. 154(2), 2010
PMID: 20921184
Quantitative genetic analysis of biomass and wood chemistry of Populus under different nitrogen levels.
Novaes E, Osorio L, Drost DR, Miles BL, Boaventura-Novaes CR, Benedict C, Dervinis C, Yu Q, Sykes R, Davis M, Martin TA, Peter GF, Kirst M., New Phytol. 182(4), 2009
PMID: 19291008
Cytokinin profiling in plant tissues using ultra-performance liquid chromatography-electrospray tandem mass spectrometry.
Novak O, Hauserova E, Amakorova P, Dolezal K, Strnad M., Phytochemistry 69(11), 2008
PMID: 18561963
Tissue-specific profiling of the Arabidopsis thaliana auxin metabolome.
Novak O, Henykova E, Sairanen I, Kowalczyk M, Pospisil T, Ljung K., Plant J. 72(3), 2012
PMID: 22725617
Quantitative analysis of cytokinins in plants by liquid chromatography–single‐quadrupole mass spectrometry
AUTHOR UNKNOWN, 2003
Rhythmic growth explained by coincidence between internal and external cues.
Nozue K, Covington MF, Duek PD, Lorrain S, Fankhauser C, Harmer SL, Maloof JN., Nature 448(7151), 2007
PMID: 17589502
The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth.
Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, Schultz TF, Farre EM, Kay SA., Nature 475(7356), 2011
PMID: 21753751
Resonating circadian clocks enhance fitness in cyanobacteria.
Ouyang Y, Andersson CR, Kondo T, Golden SS, Johnson CH., Proc. Natl. Acad. Sci. U.S.A. 95(15), 1998
PMID: 9671734
Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid.
Pencik A, Simonovik B, Petersson SV, Henykova E, Simon S, Greenham K, Zhang Y, Kowalczyk M, Estelle M, Zazimalova E, Novak O, Sandberg G, Ljung K., Plant Cell 25(10), 2013
PMID: 24163311
Identification of tomato Lhc promoter regions necessary for circadian expression.
Piechulla B, Merforth N, Rudolph B., Plant Mol. Biol. 38(4), 1998
PMID: 9747810
Expression of the Arabidopsis thaliana BBX32 gene in soybean increases grain yield.
Preuss SB, Meister R, Xu Q, Urwin CP, Tripodi FA, Screen SE, Anil VS, Zhu S, Morrell JA, Liu G, Ratcliffe OJ, Reuber TL, Khanna R, Goldman BS, Bell E, Ziegler TE, McClerren AL, Ruff TG, Petracek ME., PLoS ONE 7(2), 2012
PMID: 22363475
Cytokinin activation of Arabidopsis cell division through a D-type cyclin.
Riou-Khamlichi C, Huntley R, Jacqmard A, Murray JA., Science 283(5407), 1999
PMID: 10066178
Cytokinins: activity, biosynthesis, and translocation.
Sakakibara H., Annu Rev Plant Biol 57(), 2006
PMID: 16669769
Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature.
Seaton DD, Smith RW, Song YH, MacGregor DR, Stewart K, Steel G, Foreman J, Penfield S, Imaizumi T, Millar AJ, Halliday KJ., Mol. Syst. Biol. 11(1), 2015
PMID: 25600997
The metabolic sensor AKIN10 modulates the Arabidopsis circadian clock in a light‐dependent manner
AUTHOR UNKNOWN, 2017
CHANGES IN ENDOGENOUS CYTOKININ CONCENTRATIONS IN CHLORELLA (CHLOROPHYCEAE) IN RELATION TO LIGHT AND THE CELL CYCLE(1).
Stirk WA, van Staden J, Novak O, Dolezal K, Strnad M, Dobrev PI, Sipos G, Ordog V, Balint P., J. Phycol. 47(2), 2011
PMID: 27021861

AUTHOR UNKNOWN, 2004
The aromatic cytokinins
AUTHOR UNKNOWN, 1997
Molecular phylogeny and expression of poplar circadian clock genes, LHY1 and LHY2.
Takata N, Saito S, Saito CT, Nanjo T, Shinohara K, Uemura M., New Phytol. 181(4), 2009
PMID: 19140936
Light and the circadian clock mediate time-specific changes in sensitivity to UV-B stress under light/dark cycles.
Takeuchi T, Newton L, Burkhardt A, Mason S, Farre EM., J. Exp. Bot. 65(20), 2014
PMID: 25147271
A set of plant expression vectors for transcriptional and translational fusions.
Topfer R, Matzeit V, Gronenborn B, Schell J, Steinbiss HH., Nucleic Acids Res. 15(14), 1987
PMID: 3615207
Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
Tripathi P, Carvallo M, Hamilton EE, Preuss S, Kay SA., Proc. Natl. Acad. Sci. U.S.A. 114(1), 2016
PMID: 27999181
A Novel Metabolic Pathway for Indole-3-Acetic Acid in Apical Shoots of Populus tremula (L.) x Populus tremuloides (Michx.).
Tuominen H, Ostin A, Sandberg G, Sundberg B., Plant Physiol. 106(4), 1994
PMID: 12232425
A Radial Concentration Gradient of Indole-3-Acetic Acid Is Related to Secondary Xylem Development in Hybrid Aspen.
Tuominen H, Puech L, Fink S, Sundberg B., Plant Physiol. 115(2), 1997
PMID: 12223825
Auxin as a positional signal in pattern formation in plants.
Uggla C, Moritz T, Sandberg G, Sundberg B., Proc. Natl. Acad. Sci. U.S.A. 93(17), 1996
PMID: 11607701
A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene.
Wang ZY, Kenigsbuch D, Sun L, Harel E, Ong MS, Tobin EM., Plant Cell 9(4), 1997
PMID: 9144958
The Transcriptional Regulator BBX19 Promotes Hypocotyl Growth by Facilitating COP1-Mediated EARLY FLOWERING3 Degradation in Arabidopsis.
Wang CQ, Sarmast MK, Jiang J, Dehesh K., Plant Cell 27(4), 2015
PMID: 25841036
A brief history of circadian time: The emergence of redox oscillations as a novel component of biological rhythms
AUTHOR UNKNOWN, 2015
PtrHB7, a class III HD-Zip gene, plays a critical role in regulation of vascular cambium differentiation in Populus.
Zhu Y, Song D, Sun J, Wang X, Li L., Mol Plant 6(4), 2013
PMID: 23288865
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 29520862
PubMed | Europe PMC

Suchen in

Google Scholar