Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases

Wollenberg Valero KC, Garcia-Porta J, Rodriguez A, Arias M, Shah A, Randrianiaina RD, Brown JL, Glaw F, Amat F, Kunzel S, Metzler D, et al. (2017)
Nature Communications 8(1): 15213.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Wollenberg Valero, Katharina C.; Garcia-Porta, Joan; Rodriguez, Ariel; Arias, Monica; Shah, AbhijeetUniBi; Randrianiaina, Roger Daniel; Brown, Jason L.; Glaw, Frank; Amat, Felix; Kunzel, Sven; Metzler, Dirk; Isokpehi, Raphael D.
Alle
Abstract / Bemerkung
Anuran amphibians undergo major morphological transitions during development, but the contribution of their markedly different life-history phases to macroevolution has rarely been analysed. Here we generate testable predictions for coupling versus uncoupling of phenotypic evolution of tadpole and adult life-history phases, and for the underlying expression of genes related to morphological feature formation. We test these predictions by combining evidence from gene expression in two distantly related frogs, Xenopus laevis and Mantidactylus betsi-leanus, with patterns of morphological evolution in the entire radiation of Madagascan mantellid frogs. Genes linked to morphological structure formation are expressed in a highly phase-specific pattern, suggesting uncoupling of phenotypic evolution across life-history phases. This gene expression pattern agrees with uncoupled rates of trait evolution among life-history phases in the mantellids, which we show to have undergone an adaptive radiation. Our results validate a prevalence of uncoupling in the evolution of tadpole and adult phenotypes of frogs.
Erscheinungsjahr
2017
Zeitschriftentitel
Nature Communications
Band
8
Ausgabe
1
Art.-Nr.
15213
ISSN
2041-1723
Page URI
https://pub.uni-bielefeld.de/record/2916541

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Wollenberg Valero KC, Garcia-Porta J, Rodriguez A, et al. Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases. Nature Communications. 2017;8(1): 15213.
Wollenberg Valero, K. C., Garcia-Porta, J., Rodriguez, A., Arias, M., Shah, A., Randrianiaina, R. D., Brown, J. L., et al. (2017). Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases. Nature Communications, 8(1), 15213. doi:10.1038/ncomms15213
Wollenberg Valero, Katharina C., Garcia-Porta, Joan, Rodriguez, Ariel, Arias, Monica, Shah, Abhijeet, Randrianiaina, Roger Daniel, Brown, Jason L., et al. 2017. “Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases”. Nature Communications 8 (1): 15213.
Wollenberg Valero, K. C., Garcia-Porta, J., Rodriguez, A., Arias, M., Shah, A., Randrianiaina, R. D., Brown, J. L., Glaw, F., Amat, F., Kunzel, S., et al. (2017). Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases. Nature Communications 8:15213.
Wollenberg Valero, K.C., et al., 2017. Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases. Nature Communications, 8(1): 15213.
K.C. Wollenberg Valero, et al., “Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases”, Nature Communications, vol. 8, 2017, : 15213.
Wollenberg Valero, K.C., Garcia-Porta, J., Rodriguez, A., Arias, M., Shah, A., Randrianiaina, R.D., Brown, J.L., Glaw, F., Amat, F., Kunzel, S., Metzler, D., Isokpehi, R.D., Vences, M.: Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases. Nature Communications. 8, : 15213 (2017).
Wollenberg Valero, Katharina C., Garcia-Porta, Joan, Rodriguez, Ariel, Arias, Monica, Shah, Abhijeet, Randrianiaina, Roger Daniel, Brown, Jason L., Glaw, Frank, Amat, Felix, Kunzel, Sven, Metzler, Dirk, Isokpehi, Raphael D., and Vences, Miguel. “Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases”. Nature Communications 8.1 (2017): 15213.

2 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Mitochondrial Introgression, Color Pattern Variation, and Severe Demographic Bottlenecks in Three Species of Malagasy Poison Frogs, Genus Mantella.
Crottini A, Orozco-terWengel P, Rabemananjara FCE, Hauswaldt JS, Vences M., Genes (Basel) 10(4), 2019
PMID: 31018611
Adult frogs and tadpoles have different macroevolutionary patterns across the Australian continent.
Sherratt E, Vidal-García M, Anstis M, Keogh JS., Nat Ecol Evol 1(9), 2017
PMID: 29046549

67 References

Daten bereitgestellt von Europe PubMed Central.


AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
What do tadpoles really eat? Assessing the trophic status of an understudied and imperiled group of consumers in freshwater habitats
AUTHOR UNKNOWN, 2007
Anuran radiations and the evolution of tadpole morphospace.
Roelants K, Haas A, Bossuyt F., Proc. Natl. Acad. Sci. U.S.A. 108(21), 2011
PMID: 21555583
Phylogeny of frogs as inferred from primarily larval characters
AUTHOR UNKNOWN, 2003
Guilds of anuran larvae: relationships among developmental modes, morphologies, and habitats
AUTHOR UNKNOWN, 1989

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
Fossils, genes and the evolution of animal limbs.
Shubin N, Tabin C, Carroll S., Nature 388(6643), 1997
PMID: 9262397
DNA barcoding Madagascar's amphibian fauna
AUTHOR UNKNOWN, 2014
Speciation in little: the role of range and body size in the diversification of Malagasy mantellid frogs.
Wollenberg KC, Vieites DR, Glaw F, Vences M., BMC Evol. Biol. 11(), 2011
PMID: 21777445

AUTHOR UNKNOWN, 0
Biosystematics of the Malagasy frogs. I. Mantellinae (Ranidae)
AUTHOR UNKNOWN, 1979
Biosystematics of the Malagasy frogs. II. The genus Boophis (Rhacophoridae)
AUTHOR UNKNOWN, 1979
Descriptions and biological notes on three unusual mantellid tadpoles (Amphibia: Anura: Mantellidae) from southeastern Madagascar
AUTHOR UNKNOWN, 2006
Sand-eating tadpoles in Madagascar: morphology and ecology of the unique larvae of the treefrog Boophis picturatus
AUTHOR UNKNOWN, 2011
Morphological uniformity in the surface-feeding tadpoles of Malagasy litter frogs, subgenus Chonomantis
AUTHOR UNKNOWN, 2011
Nidicolous tadpoles rather than direct development in Malagasy frogs of the genus Gephyromantis
AUTHOR UNKNOWN, 2011
Species distribution and assembly patterns of frog larvae in rainforest streams of Madagascar
AUTHOR UNKNOWN, 2013
Opposing Patterns of Seasonal Change in Functional and Phylogenetic Diversity of Tadpole Assemblages.
Strauß A, Guilhaumon F, Randrianiaina RD, Wollenberg Valero KC, Vences M, Glos J., PLoS ONE 11(3), 2016
PMID: 27014867
Diversification rates have declined in the Malagasy herpetofauna
AUTHOR UNKNOWN, 2013

AUTHOR UNKNOWN, 0
SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise Akaike Information Criterion
AUTHOR UNKNOWN, 2013
Adaptive radiation and behaviour of the Malagasy lemurs.
Martin RD., Philos. Trans. R. Soc. Lond., B, Biol. Sci. 264(862), 1972
PMID: 4403452
An old adaptive radiation of forest dung beetles in Madagascar.
Wirta H, Orsini L, Hanski I., Mol. Phylogenet. Evol. 47(3), 2008
PMID: 18424187
The hypothesis of adaptive radiation in evolutionary biology: hard facts about a hazy concept
AUTHOR UNKNOWN, 2015
Ecological and evolutionary determinants for the adaptive radiation of the Madagascan vangas.
Jonsson KA, Fabre PH, Fritz SA, Etienne RS, Ricklefs RE, Jorgensen TB, Fjeldsa J, Rahbek C, Ericson PG, Woog F, Pasquet E, Irestedt M., Proc. Natl. Acad. Sci. U.S.A. 109(17), 2012
PMID: 22505736
Diversification and the adaptive radiation of the vangas of Madagascar.
Reddy S, Driskell A, Rabosky DL, Hackett SJ, Schulenberg TS., Proc. Biol. Sci. 279(1735), 2012
PMID: 22217720

AUTHOR UNKNOWN, 0
Sensitivity of the Indian monsoon to forcing parameters and implications for its evolution
AUTHOR UNKNOWN, 1992

AUTHOR UNKNOWN, 0
Imperfect isolation: factors and filters shaping Madagascar's extant vertebrate fauna.
Samonds KE, Godfrey LR, Ali JR, Goodman SM, Vences M, Sutherland MR, Irwin MT, Krause DW., PLoS ONE 8(4), 2013
PMID: 23626770
The fossil record of tadpoles
AUTHOR UNKNOWN, 2016
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.
Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD., Nucleic Acids Res. 43(Database issue), 2014
PMID: 25313157
g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.
Reimand J, Kull M, Peterson H, Hansen J, Vilo J., Nucleic Acids Res. 35(Web Server issue), 2007
PMID: 17478515
g:Profiler--a web server for functional interpretation of gene lists (2011 update).
Reimand J, Arak T, Vilo J., Nucleic Acids Res. 39(Web Server issue), 2011
PMID: 21646343
Ensembl 2011.
Flicek P, Amode MR, Barrell D, Beal K, Brent S, Chen Y, Clapham P, Coates G, Fairley S, Fitzgerald S, Gordon L, Hendrix M, Hourlier T, Johnson N, Kahari A, Keefe D, Keenan S, Kinsella R, Kokocinski F, Kulesha E, Larsson P, Longden I, McLaren W, Overduin B, Pritchard B, Riat HS, Rios D, Ritchie GR, Ruffier M, Schuster M, Sobral D, Spudich G, Tang YA, Trevanion S, Vandrovcova J, Vilella AJ, White S, Wilder SP, Zadissa A, Zamora J, Aken BL, Birney E, Cunningham F, Dunham I, Durbin R, Fernandez-Suarez XM, Herrero J, Hubbard TJ, Parker A, Proctor G, Vogel J, Searle SM., Nucleic Acids Res. 39(Database issue), 2010
PMID: 21045057

AUTHOR UNKNOWN, 0
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G., Nat. Genet. 25(1), 2000
PMID: 10802651
KEGG as a reference resource for gene and protein annotation.
Kanehisa M, Sato Y, Kawashima M, Furumichi M, Tanabe M., Nucleic Acids Res. 44(D1), 2015
PMID: 26476454
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M., Bioinformatics 21(18), 2005
PMID: 16081474
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A., Nat Protoc 8(8), 2013
PMID: 23845962
InterPro: the integrative protein signature database.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18940856
Bioconductor: open software development for computational biology and bioinformatics
AUTHOR UNKNOWN, 2004
Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package.
Tarazona S, Furio-Tari P, Turra D, Pietro AD, Nueda MJ, Ferrer A, Conesa A., Nucleic Acids Res. 43(21), 2015
PMID: 26184878

AUTHOR UNKNOWN, 2003
STRING v10: protein-protein interaction networks, integrated over the tree of life.
Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C., Nucleic Acids Res. 43(Database issue), 2014
PMID: 25352553

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
Inferring the dynamics of diversification: a coalescent approach.
Morlon H, Potts MD, Plotkin JB., PLoS Biol. 8(9), 2010
PMID: 20927410

AUTHOR UNKNOWN, 2014

AUTHOR UNKNOWN, 0
A novel comparative method for identifying shifts in the rate of character evolution on trees.
Eastman JM, Alfaro ME, Joyce P, Hipp AL, Harmon LJ., Evolution 65(12), 2011
PMID: 22133227
APE: Analyses of Phylogenetics and Evolution in R language.
Paradis E, Claude J, Strimmer K., Bioinformatics 20(2), 2004
PMID: 14734327
GEIGER: investigating evolutionary radiations.
Harmon LJ, Weir JT, Brock CD, Glor RE, Challenger W., Bioinformatics 24(1), 2007
PMID: 18006550
Tempo and mode of evolutionary radiation in iguanian lizards.
Harmon LJ, Schulte JA 2nd, Larson A, Losos JB., Science 301(5635), 2003
PMID: 12920297
Bayesian estimation of ancestral character states on phylogenies.
Pagel M, Meade A, Barker D., Syst. Biol. 53(5), 2004
PMID: 15545248
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