Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation

Pick TR, Bräutigam A, Schlueter U, Denton AK, Colmsee C, Scholz U, Fahnenstich H, Pieruschka R, Rascher U, Sonnewald U, Weber APM (2011)
Plant Cell 23(12): 4208-4220.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Pick, Thea R.; Bräutigam, AndreaUniBi ; Schlueter, Urte; Denton, Alisandra K.; Colmsee, Christian; Scholz, Uwe; Fahnenstich, Holger; Pieruschka, Roland; Rascher, Uwe; Sonnewald, Uwe; Weber, Andreas P. M.
Abstract / Bemerkung
We systematically analyzed a developmental gradient of the third maize (Zea mays) leaf from the point of emergence into the light to the tip in 10 continuous leaf slices to study organ development and physiological and biochemical functions. Transcriptome analysis, oxygen sensitivity of photosynthesis, and photosynthetic rate measurements showed that the maize leaf undergoes a sink-to-source transition without an intermediate phase of C-3 photosynthesis or operation of a photorespiratory carbon pump. Metabolome and transcriptome analysis, chlorophyll and protein measurements, as well as dry weight determination, showed continuous gradients for all analyzed items. The absence of binary on-off switches and regulons pointed to a morphogradient along the leaf as the determining factor of developmental stage. Analysis of transcription factors for differential expression along the leaf gradient defined a list of putative regulators orchestrating the sink-to-source transition and establishment of C-4 photosynthesis. Finally, transcriptome and metabolome analysis, as well as enzyme activity measurements, and absolute quantification of selected metabolites revised the current model of maize C-4 photosynthesis. All data sets are included within the publication to serve as a resource for maize leaf systems biology.
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Pick TR, Bräutigam A, Schlueter U, et al. Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation. Plant Cell. 2011;23(12):4208-4220.
Pick, T. R., Bräutigam, A., Schlueter, U., Denton, A. K., Colmsee, C., Scholz, U., Fahnenstich, H., et al. (2011). Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation. Plant Cell, 23(12), 4208-4220. doi:10.1105/tpc.111.090324
Pick, Thea R., Bräutigam, Andrea, Schlueter, Urte, Denton, Alisandra K., Colmsee, Christian, Scholz, Uwe, Fahnenstich, Holger, et al. 2011. “Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation”. Plant Cell 23 (12): 4208-4220.
Pick, T. R., Bräutigam, A., Schlueter, U., Denton, A. K., Colmsee, C., Scholz, U., Fahnenstich, H., Pieruschka, R., Rascher, U., Sonnewald, U., et al. (2011). Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation. Plant Cell 23, 4208-4220.
Pick, T.R., et al., 2011. Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation. Plant Cell, 23(12), p 4208-4220.
T.R. Pick, et al., “Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation”, Plant Cell, vol. 23, 2011, pp. 4208-4220.
Pick, T.R., Bräutigam, A., Schlueter, U., Denton, A.K., Colmsee, C., Scholz, U., Fahnenstich, H., Pieruschka, R., Rascher, U., Sonnewald, U., Weber, A.P.M.: Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation. Plant Cell. 23, 4208-4220 (2011).
Pick, Thea R., Bräutigam, Andrea, Schlueter, Urte, Denton, Alisandra K., Colmsee, Christian, Scholz, Uwe, Fahnenstich, Holger, Pieruschka, Roland, Rascher, Uwe, Sonnewald, Uwe, and Weber, Andreas P. M. “Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation”. Plant Cell 23.12 (2011): 4208-4220.
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The role of alanine and aspartate aminotransferases in C4 photosynthesis.
Schlüter U, Bräutigam A, Droz JM, Schwender J, Weber APM., Plant Biol (Stuttg) 21 Suppl 1(), 2019
PMID: 30126035
Decarboxylation mechanisms of C4 photosynthesis in Saccharum spp.: increased PEPCK activity under water-limiting conditions.
Cacefo V, Ribas AF, Zilliani RR, Neris DM, Domingues DS, Moro AL, Vieira LGE., BMC Plant Biol 19(1), 2019
PMID: 30991938
Establishment of Photosynthesis through Chloroplast Development Is Controlled by Two Distinct Regulatory Phases.
Dubreuil C, Jin X, Barajas-López JD, Hewitt TC, Tanz SK, Dobrenel T, Schröder WP, Hanson J, Pesquet E, Grönlund A, Small I, Strand Å., Plant Physiol 176(2), 2018
PMID: 28626007
The Impacts of Fluctuating Light on Crop Performance.
Slattery RA, Walker BJ, Weber APM, Ort DR., Plant Physiol 176(2), 2018
PMID: 29192028
Nitrogen supply influences photosynthesis establishment along the sugarcane leaf.
Bassi D, Menossi M, Mattiello L., Sci Rep 8(1), 2018
PMID: 29396510
An integrated multi-layered analysis of the metabolic networks of different tissues uncovers key genetic components of primary metabolism in maize.
Wen W, Jin M, Li K, Liu H, Xiao Y, Zhao M, Alseekh S, Li W, de Abreu E Lima F, Brotman Y, Willmitzer L, Fernie AR, Yan J., Plant J 93(6), 2018
PMID: 29381266
Investigating the NAD-ME biochemical pathway within C4 grasses using transcript and amino acid variation in C4 photosynthetic genes.
Watson-Lazowski A, Papanicolaou A, Sharwood R, Ghannoum O., Photosynth Res 138(2), 2018
PMID: 30078073
Cross species selection scans identify components of C4 photosynthesis in the grasses.
Huang P, Studer AJ, Schnable JC, Kellogg EA, Brutnell TP., J Exp Bot 68(2), 2017
PMID: 27436281
C3 cotyledons are followed by C4 leaves: intra-individual transcriptome analysis of Salsola soda (Chenopodiaceae).
Lauterbach M, Billakurthi K, Kadereit G, Ludwig M, Westhoff P, Gowik U., J Exp Bot 68(2), 2017
PMID: 27660482
Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation.
Arrivault S, Obata T, Szecówka M, Mengin V, Guenther M, Hoehne M, Fernie AR, Stitt M., J Exp Bot 68(2), 2017
PMID: 27834209
Regulatory gateways for cell-specific gene expression in C4 leaves with Kranz anatomy.
Reeves G, Grangé-Guermente MJ, Hibberd JM., J Exp Bot 68(2), 2017
PMID: 27940469
Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data.
Denton AK, Maß J, Külahoglu C, Lercher MJ, Bräutigam A, Weber AP., J Exp Bot 68(2), 2017
PMID: 28043950
Shared characteristics underpinning C4 leaf maturation derived from analysis of multiple C3 and C4 species of Flaveria.
Kümpers BM, Burgess SJ, Reyna-Llorens I, Smith-Unna R, Boursnell C, Hibberd JM., J Exp Bot 68(2), 2017
PMID: 28062590
Candidate regulators of Early Leaf Development in Maize Perturb Hormone Signalling and Secondary Cell Wall Formation When Constitutively Expressed in Rice.
Wang P, Karki S, Biswal AK, Lin HC, Dionora MJ, Rizal G, Yin X, Schuler ML, Hughes T, Fouracre JP, Jamous BA, Sedelnikova O, Lo SF, Bandyopadhyay A, Yu SM, Kelly S, Quick WP, Langdale JA., Sci Rep 7(1), 2017
PMID: 28674432
Strategies and tools to improve crop productivity by targeting photosynthesis.
Nuccio ML, Potter L, Stiegelmeyer SM, Curley J, Cohn J, Wittich PE, Tan X, Davis J, Ni J, Trullinger J, Hall R, Bate NJ., Philos Trans R Soc Lond B Biol Sci 372(1730), 2017
PMID: 28808096
De novo Transcriptome Assembly and Comparison of C3, C3-C4, and C4 Species of Tribe Salsoleae (Chenopodiaceae).
Lauterbach M, Schmidt H, Billakurthi K, Hankeln T, Westhoff P, Gowik U, Kadereit G., Front Plant Sci 8(), 2017
PMID: 29184562
Systems biology and metabolic modelling unveils limitations to polyhydroxybutyrate accumulation in sugarcane leaves; lessons for C4 engineering.
McQualter RB, McQualter RB, Bellasio C, Gebbie LK, Petrasovits LA, Palfreyman RW, Hodson MP, Plan MR, Blackman DM, Brumbley SM, Nielsen LK., Plant Biotechnol J 14(2), 2016
PMID: 26015295
C4 Photosynthesis in the Rice Paddy: Insights from the Noxious Weed Echinochloa glabrescens.
Covshoff S, Szecowka M, Hughes TE, Smith-Unna R, Kelly S, Bailey KJ, Sage TL, Pachebat JA, Leegood R, Hibberd JM., Plant Physiol 170(1), 2016
PMID: 26527656
Combined Large-Scale Phenotyping and Transcriptomics in Maize Reveals a Robust Growth Regulatory Network.
Baute J, Herman D, Coppens F, De Block J, Slabbinck B, Dell'Acqua M, Dell'Acqua M, Pè ME, Maere S, Nelissen H, Inzé D., Plant Physiol 170(3), 2016
PMID: 26754667
Interactions of C4 Subtype Metabolic Activities and Transport in Maize Are Revealed through the Characterization of DCT2 Mutants.
Weissmann S, Ma F, Furuyama K, Gierse J, Berg H, Shao Y, Taniguchi M, Allen DK, Brutnell TP., Plant Cell 28(2), 2016
PMID: 26813621
Combined Chlorophyll Fluorescence and Transcriptomic Analysis Identifies the P3/P4 Transition as a Key Stage in Rice Leaf Photosynthetic Development.
van Campen JC, Yaapar MN, Narawatthana S, Lehmeier C, Wanchana S, Thakur V, Chater C, Kelly S, Rolfe SA, Quick WP, Fleming AJ., Plant Physiol 170(3), 2016
PMID: 26813793
A two-dimensional microscale model of gas exchange during photosynthesis in maize (Zea mays L.) leaves.
Retta M, Ho QT, Yin X, Verboven P, Berghuijs HNC, Struik PC, Nicolaï BM., Plant Sci 246(), 2016
PMID: 26993234
The Coordination of Gene Expression within Photosynthesis Pathway for Acclimation of C4 Energy Crop Miscanthus lutarioriparius.
Xing S, Kang L, Xu Q, Fan Y, Liu W, Zhu C, Song Z, Wang Q, Yan J, Li J, Sang T., Front Plant Sci 7(), 2016
PMID: 26904072
Metabolic Network Constrains Gene Regulation of C4 Photosynthesis: The Case of Maize.
Robaina-Estévez S, Nikoloski Z., Plant Cell Physiol 57(5), 2016
PMID: 26903529
Photorespiration connects C3 and C4 photosynthesis.
Bräutigam A, Gowik U., J Exp Bot 67(10), 2016
PMID: 26912798
Changes and their possible causes in δ13C of dark-respired CO2 and its putative bulk and soluble sources during maize ontogeny.
Ghashghaie J, Badeck FW, Girardin C, Huignard C, Aydinlis Z, Fonteny C, Priault P, Fresneau C, Lamothe-Sibold M, Streb P, Terwilliger VJ., J Exp Bot 67(9), 2016
PMID: 26970389
Evidence for a Role for NAD(P)H Dehydrogenase in Concentration of CO2 in the Bundle Sheath Cell of Zea mays.
Peterson RB, Schultes NP, McHale NA, Zelitch I., Plant Physiol 171(1), 2016
PMID: 27002061
Finding the genes to build C4 rice.
Wang P, Vlad D, Langdale JA., Curr Opin Plant Biol 31(), 2016
PMID: 27055266
A synthesis of transcriptomic surveys to dissect the genetic basis of C4 photosynthesis.
Huang P, Brutnell TP., Curr Opin Plant Biol 31(), 2016
PMID: 27078208
Engineering C4 photosynthesis into C3 chassis in the synthetic biology age.
Schuler ML, Mantegazza O, Weber AP., Plant J 87(1), 2016
PMID: 26945781
The Roles of Organic Acids in C4 Photosynthesis.
Ludwig M., Front Plant Sci 7(), 2016
PMID: 27242848
Flowering Time-Regulated Genes in Maize Include the Transcription Factor ZmMADS1.
Alter P, Bircheneder S, Zhou LZ, Schlüter U, Gahrtz M, Sonnewald U, Dresselhaus T., Plant Physiol 172(1), 2016
PMID: 27457125
Temporal Shift of Circadian-Mediated Gene Expression and Carbon Fixation Contributes to Biomass Heterosis in Maize Hybrids.
Ko DK, Rohozinski D, Song Q, Taylor SH, Juenger TE, Harmon FG, Chen ZJ., PLoS Genet 12(7), 2016
PMID: 27467757
Nitrogen assimilation system in maize is regulated by developmental and tissue-specific mechanisms.
Plett D, Holtham L, Baumann U, Kalashyan E, Francis K, Enju A, Toubia J, Roessner U, Bacic A, Rafalski A, Dhugga KS, Tester M, Garnett T, Kaiser BN., Plant Mol Biol 92(3), 2016
PMID: 27511191
Metabolic Reconstruction of Setaria italica: A Systems Biology Approach for Integrating Tissue-Specific Omics and Pathway Analysis of Bioenergy Grasses.
de Oliveira Dal'Molin CG, Orellana C, Gebbie L, Steen J, Hodson MP, Chrysanthopoulos P, Plan MR, McQualter R, Palfreyman RW, Nielsen LK., Front Plant Sci 7(), 2016
PMID: 27559337
Genetic variability of the phloem sap metabolite content of maize (Zea mays L.) during the kernel-filling period.
Yesbergenova-Cuny Z, Dinant S, Martin-Magniette ML, Quilleré I, Armengaud P, Monfalet P, Lea PJ, Hirel B., Plant Sci 252(), 2016
PMID: 27717471
The Interplay between Carbon Availability and Growth in Different Zones of the Growing Maize Leaf.
Czedik-Eysenberg A, Arrivault S, Lohse MA, Feil R, Krohn N, Encke B, Nunes-Nesi A, Fernie AR, Lunn JE, Sulpice R, Stitt M., Plant Physiol 172(2), 2016
PMID: 27582314
The Evolutionary Basis of Naturally Diverse Rice Leaves Anatomy.
Chatterjee J, Dionora J, Elmido-Mabilangan A, Wanchana S, Thakur V, Bandyopadhyay A, Brar DS, Quick WP., PLoS One 11(10), 2016
PMID: 27792743
An integrated functional approach to dissect systemic responses in maize to arbuscular mycorrhizal symbiosis.
Gerlach N, Schmitz J, Polatajko A, Schlüter U, Fahnenstich H, Witt S, Fernie AR, Uroic K, Scholz U, Sonnewald U, Bucher M., Plant Cell Environ 38(8), 2015
PMID: 25630535
Insights into C4 metabolism from comparative deep sequencing.
Burgess SJ, Hibberd JM., Curr Opin Plant Biol 25(), 2015
PMID: 26051034
Phosphorus nutrition in Proteaceae and beyond.
Lambers H, Finnegan PM, Jost R, Plaxton WC, Shane MW, Stitt M., Nat Plants 1(), 2015
PMID: 27250542
Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population.
Baute J, Herman D, Coppens F, De Block J, Slabbinck B, Dell'Acqua M, Pè ME, Maere S, Nelissen H, Inzé D., Genome Biol 16(), 2015
PMID: 26357925
Physiological and transcriptional analyses of developmental stages along sugarcane leaf.
Mattiello L, Riaño-Pachón DM, Martins MC, da Cruz LP, Bassi D, Marchiori PE, Ribeiro RV, Labate MT, Labate CA, Menossi M., BMC Plant Biol 15(), 2015
PMID: 26714767
Getting the most out of natural variation in C4 photosynthesis.
Covshoff S, Burgess SJ, Kneřová J, Kümpers BM., Photosynth Res 119(1-2), 2014
PMID: 23794170
Light-regulated phosphorylation of maize phosphoenolpyruvate carboxykinase plays a vital role in its activity.
Chao Q, Liu XY, Mei YC, Gao ZF, Chen YB, Qian CR, Hao YB, Wang BC., Plant Mol Biol 85(1-2), 2014
PMID: 24435212
Cracking the Kranz enigma with systems biology.
Fouracre JP, Ando S, Langdale JA., J Exp Bot 65(13), 2014
PMID: 24510938
Engineering crassulacean acid metabolism to improve water-use efficiency.
Borland AM, Hartwell J, Weston DJ, Schlauch KA, Tschaplinski TJ, Tuskan GA, Yang X, Cushman JC., Trends Plant Sci 19(5), 2014
PMID: 24559590
Three distinct biochemical subtypes of C4 photosynthesis? A modelling analysis.
Wang Y, Bräutigam A, Weber AP, Zhu XG., J Exp Bot 65(13), 2014
PMID: 24609651
Bundle-sheath leakiness in C4 photosynthesis: a careful balancing act between CO2 concentration and assimilation.
Kromdijk J, Ubierna N, Cousins AB, Griffiths H., J Exp Bot 65(13), 2014
PMID: 24755278
Developmental dynamics of Kranz cell transcriptional specificity in maize leaf reveals early onset of C4-related processes.
Tausta SL, Li P, Si Y, Gandotra N, Liu P, Sun Q, Brutnell TP, Nelson T., J Exp Bot 65(13), 2014
PMID: 24790109
Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species.
Sulpice R, Ishihara H, Schlereth A, Cawthray GR, Encke B, Giavalisco P, Ivakov A, Arrivault S, Jost R, Krohn N, Kuo J, Laliberté E, Pearse SJ, Raven JA, Scheible WR, Teste F, Veneklaas EJ, Stitt M, Lambers H., Plant Cell Environ 37(6), 2014
PMID: 24895754
A high throughput gas exchange screen for determining rates of photorespiration or regulation of C4 activity.
Bellasio C, Burgess SJ, Griffiths H, Hibberd JM., J Exp Bot 65(13), 2014
PMID: 25006037
Comparative transcriptome atlases reveal altered gene expression modules between two Cleomaceae C3 and C4 plant species.
Külahoglu C, Denton AK, Sommer M, Maß J, Schliesky S, Wrobel TJ, Berckmans B, Gongora-Castillo E, Buell CR, Simon R, De Veylder L, Bräutigam A, Weber AP., Plant Cell 26(8), 2014
PMID: 25122153
Comparative analyses of C₄ and C₃ photosynthesis in developing leaves of maize and rice.
Wang L, Czedik-Eysenberg A, Mertz RA, Si Y, Tohge T, Nunes-Nesi A, Arrivault S, Dedow LK, Bryant DW, Zhou W, Xu J, Weissmann S, Studer A, Li P, Zhang C, LaRue T, Shao Y, Ding Z, Sun Q, Patel RV, Turgeon R, Zhu X, Provart NJ, Mockler TC, Fernie AR, Stitt M, Liu P, Brutnell TP., Nat Biotechnol 32(11), 2014
PMID: 25306245
Historical profiling of maize duplicate genes sheds light on the evolution of C4 photosynthesis in grasses.
Chang YM, Chang CL, Li WH, Shih AC., Mol Phylogenet Evol 66(2), 2013
PMID: 22960144
Parallel recruitment of multiple genes into c4 photosynthesis.
Christin PA, Boxall SF, Gregory R, Edwards EJ, Hartwell J, Osborne CP., Genome Biol Evol 5(11), 2013
PMID: 24179135
UniVIO: a multiple omics database with hormonome and transcriptome data from rice.
Kudo T, Akiyama K, Kojima M, Makita N, Sakurai T, Sakakibara H., Plant Cell Physiol 54(2), 2013
PMID: 23314752
Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis.
Watanabe M, Balazadeh S, Tohge T, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R., Plant Physiol 162(3), 2013
PMID: 23696093
The recurrent assembly of C4 photosynthesis, an evolutionary tale.
Christin PA, Osborne CP., Photosynth Res 117(1-3), 2013
PMID: 23703454
Predicting C4 photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape.
Heckmann D, Schulze S, Denton A, Gowik U, Westhoff P, Weber AP, Lercher MJ., Cell 153(7), 2013
PMID: 23791184
Adaptation of maize source leaf metabolism to stress related disturbances in carbon, nitrogen and phosphorus balance.
Schlüter U, Colmsee C, Scholz U, Bräutigam A, Weber AP, Zellerhoff N, Bucher M, Fahnenstich H, Sonnewald U., BMC Genomics 14(), 2013
PMID: 23822863
Biogenesis and homeostasis of chloroplasts and other plastids.
Jarvis P, López-Juez E., Nat Rev Mol Cell Biol 14(12), 2013
PMID: 24263360
Coming of leaf age: control of growth by hydraulics and metabolics during leaf ontogeny.
Pantin F, Simonneau T, Muller B., New Phytol 196(2), 2012
PMID: 22924516
Maize source leaf adaptation to nitrogen deficiency affects not only nitrogen and carbon metabolism but also control of phosphate homeostasis.
Schlüter U, Mascher M, Colmsee C, Scholz U, Bräutigam A, Fahnenstich H, Sonnewald U., Plant Physiol 160(3), 2012
PMID: 22972706
OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize.
Colmsee C, Mascher M, Czauderna T, Hartmann A, Schlüter U, Zellerhoff N, Schmitz J, Bräutigam A, Pick TR, Alter P, Gahrtz M, Witt S, Fernie AR, Börnke F, Fahnenstich H, Bucher M, Dresselhaus T, Weber AP, Schreiber F, Scholz U, Sonnewald U., BMC Plant Biol 12(), 2012
PMID: 23272737

43 References

Daten bereitgestellt von Europe PubMed Central.

Technical advance: simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry.
Roessner U, Wagner C, Kopka J, Trethewey RN, Willmitzer L., Plant J. 23(1), 2000
PMID: 10929108
Galactolipids rule in seed plants.
Dormann P, Benning C., Trends Plant Sci. 7(3), 2002
PMID: 11906834
Do metabolite transport processes limit photosynthesis?
Brautigam A, Weber AP., Plant Physiol. 155(1), 2010
PMID: 20855521
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.
Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M., Plant J. 37(6), 2004
PMID: 14996223
Sugar sensing and signaling in plants: conserved and novel mechanisms.
Rolland F, Baena-Gonzalez E, Sheen J., Annu Rev Plant Biol 57(), 2006
PMID: 16669778
Cluster analysis and display of genome-wide expression patterns.
Eisen MB, Spellman PT, Brown PO, Botstein D., Proc. Natl. Acad. Sci. U.S.A. 95(25), 1998
PMID: 9843981
Improved method for the isolation of RNA from plant tissues.
Logemann J, Schell J, Willmitzer L., Anal. Biochem. 163(1), 1987
PMID: 2441623
Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize.
Majeran W, Friso G, Ponnala L, Connolly B, Huang M, Reidel E, Zhang C, Asakura Y, Bhuiyan NH, Sun Q, Turgeon R, van Wijk KJ., Plant Cell 22(11), 2010
PMID: 21081695
Metabolite profiling for plant functional genomics.
Fiehn O, Kopka J, Dormann P, Altmann T, Trethewey RN, Willmitzer L., Nat. Biotechnol. 18(11), 2000
PMID: 11062433
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence.
Emanuelsson O, Nielsen H, Brunak S, von Heijne G., J. Mol. Biol. 300(4), 2000
PMID: 10891285
PlnTFDB: updated content and new features of the plant transcription factor database.
Perez-Rodriguez P, Riano-Pachon DM, Correa LG, Rensing SA, Kersten B, Mueller-Roeber B., Nucleic Acids Res. 38(Database issue), 2009
PMID: 19858103
Phylogenetic analyses reveal the shady history of C4 grasses.
Edwards EJ, Smith SA., Proc. Natl. Acad. Sci. U.S.A. 107(6), 2010
PMID: 20142480
Analyzing real-time PCR data by the comparative C(T) method.
Schmittgen TD, Livak KJ., Nat Protoc 3(6), 2008
PMID: 18546601
The chloroplastic 2-oxoglutarate/malate transporter has dual function as the malate valve and in carbon/nitrogen metabolism.
Kinoshita H, Nagasaki J, Yoshikawa N, Yamamoto A, Takito S, Kawasaki M, Sugiyama T, Miyake H, Weber APM, Taniguchi M., Plant J. 65(1), 2010
PMID: 21175886
An mRNA blueprint for C4 photosynthesis derived from comparative transcriptomics of closely related C3 and C4 species.
Brautigam A, Kajala K, Wullenweber J, Sommer M, Gagneul D, Weber KL, Carr KM, Gowik U, Mass J, Lercher MJ, Westhoff P, Hibberd JM, Weber AP., Plant Physiol. 155(1), 2010
PMID: 20543093
TM4: a free, open-source system for microarray data management and analysis.
Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J., BioTechniques 34(2), 2003
PMID: 12613259
Using C4 photosynthesis to increase the yield of rice-rationale and feasibility.
Hibberd JM, Sheehy JE, Langdale JA., Curr. Opin. Plant Biol. 11(2), 2008
PMID: 18203653
Evolution of C4 photosynthesis in the genus Flaveria: how many and which genes does it take to make C4?
Gowik U, Brautigam A, Weber KL, Weber AP, Westhoff P., Plant Cell 23(6), 2011
PMID: 21705644
Cell position and light influence C4 versus C3 patterns of photosynthetic gene expression in maize.
Langdale JA, Zelitch I, Miller E, Nelson T., EMBO J. 7(12), 1988
PMID: 2850171
PHOSPHOENOLPYRUVATE CARBOXYLASE: A Ubiquitous, Highly Regulated Enzyme in Plants.
Chollet R, Vidal J, O'Leary MH., Annu. Rev. Plant Physiol. Plant Mol. Biol. 47(), 1996
PMID: 15012290
Phosphoenolpyruvate carboxykinase is involved in the decarboxylation of aspartate in the bundle sheath of maize
Wingler A, Walker RP, Chen ZH, Leegood RC., Plant Physiol. 120(2), 1999
PMID: 10364405
Simultaneous screening for 238 drugs in blood by liquid chromatography-ion spray tandem mass spectrometry with multiple-reaction monitoring.
Gergov M, Ojanpera I, Vuori E., J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 795(1), 2003
PMID: 12957168
The protein phosphatase AtPP2CA negatively regulates abscisic acid signal transduction in Arabidopsis, and effects of abh1 on AtPP2CA mRNA.
Kuhn JM, Boisson-Dernier A, Dizon MB, Maktabi MH, Schroeder JI., Plant Physiol. 140(1), 2005
PMID: 16361522
New guidelines for delta13C measurements.
Coplen TB, Brand WA, Gehre M, Groning M, Meijer HA, Toman B, Verkouteren RM., Anal. Chem. 78(7), 2006
PMID: 16579631
The developmental dynamics of the maize leaf transcriptome.
Li P, Ponnala L, Gandotra N, Wang L, Si Y, Tausta SL, Kebrom TH, Provart N, Patel R, Myers CR, Reidel EJ, Turgeon R, Liu P, Sun Q, Nelson T, Brutnell TP., Nat. Genet. 42(12), 2010
PMID: 21037569
Regulatory metabolic networks in drought stress responses.
Seki M, Umezawa T, Urano K, Shinozaki K., Curr. Opin. Plant Biol. 10(3), 2007
PMID: 17468040
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
The Arabidopsis Information Resource (TAIR): gene structure and function annotation.
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E., Nucleic Acids Res. 36(Database issue), 2007
PMID: 17986450
The Arabidopsis mutant dct is deficient in the plastidic glutamate/malate translocator DiT2.
Renne P, Dressen U, Hebbeker U, Hille D, Flugge UI, Westhoff P, Weber AP., Plant J. 35(3), 2003
PMID: 12887583

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