The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization
Steffens A, Bräutigam A, Jakoby M, Hülskamp M (2015)
PLOS Biology 13(7): e1002188.
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Autor*in
Steffens, Alexandra;
Bräutigam, AndreaUniBi ;
Jakoby, Marc;
Hülskamp, Martin
Einrichtung
Abstract / Bemerkung
Members of the highly conserved class of BEACH domain containing proteins (BDCPs) have been established as broad facilitators of protein-protein interactions and membrane dynamics in the context of human diseases like albinism, bleeding diathesis, impaired cellular immunity, cancer predisposition, and neurological dysfunctions. Also, the Arabidopsis thaliana BDCP SPIRRIG (SPI) is important for membrane integrity, as spi mutants exhibit split vacuoles. In this work, we report a novel molecular function of the BDCP SPI in ribonucleoprotein particle formation. We show that SPI interacts with the P-body core component DECAPPING PROTEIN 1 (DCP1), associates to mRNA processing bodies (P-bodies), and regulates their assembly upon salt stress. The finding that spi mutants exhibit salt hypersensitivity suggests that the local function of SPI at P-bodies is of biological relevance. Transcriptome-wide analysis revealed qualitative differences in the salt stress-regulated transcriptional response of Col-0 and spi. We show that SPI regulates the salt stress-dependent post-transcriptional stabilization, cytoplasmic agglomeration, and localization to P-bodies of a subset of salt stress-regulated mRNAs. Finally, we show that the PH-BEACH domains of SPI and its human homolog FAN (Factor Associated with Neutral sphingomyelinase activation) interact with DCP1 isoforms from plants, mammals, and yeast, suggesting the evolutionary conservation of an association of BDCPs and P-bodies.
Erscheinungsjahr
2015
Zeitschriftentitel
PLOS Biology
Band
13
Ausgabe
7
Art.-Nr.
e1002188
Urheberrecht / Lizenzen
ISSN
1545-7885
Page URI
https://pub.uni-bielefeld.de/record/2915133
Zitieren
Steffens A, Bräutigam A, Jakoby M, Hülskamp M. The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization. PLOS Biology. 2015;13(7): e1002188.
Steffens, A., Bräutigam, A., Jakoby, M., & Hülskamp, M. (2015). The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization. PLOS Biology, 13(7), e1002188. doi:10.1371/journal.pbio.1002188
Steffens, Alexandra, Bräutigam, Andrea, Jakoby, Marc, and Hülskamp, Martin. 2015. “The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization”. PLOS Biology 13 (7): e1002188.
Steffens, A., Bräutigam, A., Jakoby, M., and Hülskamp, M. (2015). The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization. PLOS Biology 13:e1002188.
Steffens, A., et al., 2015. The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization. PLOS Biology, 13(7): e1002188.
A. Steffens, et al., “The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization”, PLOS Biology, vol. 13, 2015, : e1002188.
Steffens, A., Bräutigam, A., Jakoby, M., Hülskamp, M.: The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization. PLOS Biology. 13, : e1002188 (2015).
Steffens, Alexandra, Bräutigam, Andrea, Jakoby, Marc, and Hülskamp, Martin. “The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization”. PLOS Biology 13.7 (2015): e1002188.
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INTACT
19 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden
steffens-2015-8 (INTACT: EBI-16163018)
Interaction detection method: bimolecular fluorescence complementation
Interaction detection method: bimolecular fluorescence complementation
steffens-2015-17 (INTACT: EBI-16163209)
Interaction detection method: fluorescent resonance energy transfer
Interaction detection method: fluorescent resonance energy transfer
UNIPROT
4 Einträge gefunden, die diesen Artikel zitieren
mRNA-decapping enzyme subunit 1 (UNIPROT: Q12517)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Download in FASTA format
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Download in FASTA format
mRNA-decapping enzyme-like protein (UNIPROT: Q9SJF3)
Organism: Arabidopsis thaliana
Download in FASTA format
Organism: Arabidopsis thaliana
Download in FASTA format
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Andrei MA, Ingelfinger D, Heintzmann R, Achsel T, Rivera-Pomar R, Luhrmann R., RNA 11(5), 2005
PMID: 15840819
The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress responses in Arabidopsis.
Sun J, Jiang H, Xu Y, Li H, Wu X, Xie Q, Li C., Plant Cell Physiol. 48(8), 2007
PMID: 17609218
Sun J, Jiang H, Xu Y, Li H, Wu X, Xie Q, Li C., Plant Cell Physiol. 48(8), 2007
PMID: 17609218
Overexpression of SOS (Salt Overly Sensitive) genes increases salt tolerance in transgenic Arabidopsis.
Yang Q, Chen ZZ, Zhou XF, Yin HB, Li X, Xin XF, Hong XH, Zhu JK, Gong Z., Mol Plant 2(1), 2008
PMID: 19529826
Yang Q, Chen ZZ, Zhou XF, Yin HB, Li X, Xin XF, Hong XH, Zhu JK, Gong Z., Mol Plant 2(1), 2008
PMID: 19529826
CIPK9: a calcium sensor-interacting protein kinase required for low-potassium tolerance in Arabidopsis.
Pandey GK, Cheong YH, Kim BG, Grant JJ, Li L, Luan S., Cell Res. 17(5), 2007
PMID: 17486125
Pandey GK, Cheong YH, Kim BG, Grant JJ, Li L, Luan S., Cell Res. 17(5), 2007
PMID: 17486125
The CBL-CIPK network mediates different signaling pathways in plants.
Yu Q, An L, Li W., Plant Cell Rep. 33(2), 2013
PMID: 24097244
Yu Q, An L, Li W., Plant Cell Rep. 33(2), 2013
PMID: 24097244
Arabidopsis zinc finger proteins AtC3H49/AtTZF3 and AtC3H20/AtTZF2 are involved in ABA and JA responses.
Lee SJ, Jung HJ, Kang H, Kim SY., Plant Cell Physiol. 53(4), 2012
PMID: 22383628
Lee SJ, Jung HJ, Kang H, Kim SY., Plant Cell Physiol. 53(4), 2012
PMID: 22383628
Differential expression of two P5CS genes controlling proline accumulation during salt-stress requires ABA and is regulated by ABA1, ABI1 and AXR2 in Arabidopsis.
Strizhov N, Abraham E, Okresz L, Blickling S, Zilberstein A, Schell J, Koncz C, Szabados L., Plant J. 12(3), 1997
PMID: 9351242
Strizhov N, Abraham E, Okresz L, Blickling S, Zilberstein A, Schell J, Koncz C, Szabados L., Plant J. 12(3), 1997
PMID: 9351242
A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence.
Balazadeh S, Siddiqui H, Allu AD, Matallana-Ramirez LP, Caldana C, Mehrnia M, Zanor MI, Kohler B, Mueller-Roeber B., Plant J. 62(2), 2010
PMID: 20113437
Balazadeh S, Siddiqui H, Allu AD, Matallana-Ramirez LP, Caldana C, Mehrnia M, Zanor MI, Kohler B, Mueller-Roeber B., Plant J. 62(2), 2010
PMID: 20113437
The nuclear-encoded factor HCF173 is involved in the initiation of translation of the psbA mRNA in Arabidopsis thaliana.
Schult K, Meierhoff K, Paradies S, Toller T, Wolff P, Westhoff P., Plant Cell 19(4), 2007
PMID: 17435084
Schult K, Meierhoff K, Paradies S, Toller T, Wolff P, Westhoff P., Plant Cell 19(4), 2007
PMID: 17435084
Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana.
Narsai R, Howell KA, Millar AH, O'Toole N, Small I, Whelan J., Plant Cell 19(11), 2007
PMID: 18024567
Narsai R, Howell KA, Millar AH, O'Toole N, Small I, Whelan J., Plant Cell 19(11), 2007
PMID: 18024567
In vivo visualization of RNA in plants cells using the λN₂₂ system and a GATEWAY-compatible vector series for candidate RNAs.
Schonberger J, Hammes UZ, Dresselhaus T., Plant J. 71(1), 2012
PMID: 22268772
Schonberger J, Hammes UZ, Dresselhaus T., Plant J. 71(1), 2012
PMID: 22268772
Germline P granules are liquid droplets that localize by controlled dissolution/condensation.
Brangwynne CP, Eckmann CR, Courson DS, Rybarska A, Hoege C, Gharakhani J, Julicher F, Hyman AA., Science 324(5935), 2009
PMID: 19460965
Brangwynne CP, Eckmann CR, Courson DS, Rybarska A, Hoege C, Gharakhani J, Julicher F, Hyman AA., Science 324(5935), 2009
PMID: 19460965
Phase transitions in the assembly of multivalent signalling proteins.
Li P, Banjade S, Cheng HC, Kim S, Chen B, Guo L, Llaguno M, Hollingsworth JV, King DS, Banani SF, Russo PS, Jiang QX, Nixon BT, Rosen MK., Nature 483(7389), 2012
PMID: 22398450
Li P, Banjade S, Cheng HC, Kim S, Chen B, Guo L, Llaguno M, Hollingsworth JV, King DS, Banani SF, Russo PS, Jiang QX, Nixon BT, Rosen MK., Nature 483(7389), 2012
PMID: 22398450
Quantitative analysis of Argonaute protein reveals microRNA-dependent localization to stress granules.
Leung AK, Calabrese JM, Sharp PA., Proc. Natl. Acad. Sci. U.S.A. 103(48), 2006
PMID: 17116888
Leung AK, Calabrese JM, Sharp PA., Proc. Natl. Acad. Sci. U.S.A. 103(48), 2006
PMID: 17116888
The dynamics of mammalian P body transport, assembly, and disassembly in vivo.
Aizer A, Brody Y, Ler LW, Sonenberg N, Singer RH, Shav-Tal Y., Mol. Biol. Cell 19(10), 2008
PMID: 18653466
Aizer A, Brody Y, Ler LW, Sonenberg N, Singer RH, Shav-Tal Y., Mol. Biol. Cell 19(10), 2008
PMID: 18653466
Reconsidering movement of eukaryotic mRNAs between polysomes and P bodies.
Arribere JA, Doudna JA, Gilbert WV., Mol. Cell 44(5), 2011
PMID: 22152478
Arribere JA, Doudna JA, Gilbert WV., Mol. Cell 44(5), 2011
PMID: 22152478
Transcriptional regulation of ribosome components are determined by stress according to cellular compartments in Arabidopsis thaliana.
Sormani R, Masclaux-Daubresse C, Daniel-Vedele F, Daniele-Vedele F, Chardon F., PLoS ONE 6(12), 2011
PMID: 22164228
Sormani R, Masclaux-Daubresse C, Daniel-Vedele F, Daniele-Vedele F, Chardon F., PLoS ONE 6(12), 2011
PMID: 22164228
Preferential translation mediated by Hsp81-3 5'-UTR during heat shock involves ribosome entry at the 5'-end rather than an internal site in Arabidopsis suspension cells.
Matsuura H, Shinmyo A, Kato K., J. Biosci. Bioeng. 105(1), 2008
PMID: 18295718
Matsuura H, Shinmyo A, Kato K., J. Biosci. Bioeng. 105(1), 2008
PMID: 18295718
Signalling to translation: how signal transduction pathways control the protein synthetic machinery.
Proud CG., Biochem. J. 403(2), 2007
PMID: 17376031
Proud CG., Biochem. J. 403(2), 2007
PMID: 17376031
Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana.
Branco-Price C, Kaiser KA, Jang CJ, Larive CK, Bailey-Serres J., Plant J. 56(5), 2008
PMID: 18665916
Branco-Price C, Kaiser KA, Jang CJ, Larive CK, Bailey-Serres J., Plant J. 56(5), 2008
PMID: 18665916
Large-scale analysis of mRNA translation states during sucrose starvation in arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control.
Nicolai M, Roncato MA, Canoy AS, Rouquie D, Sarda X, Freyssinet G, Robaglia C., Plant Physiol. 141(2), 2006
PMID: 16632591
Nicolai M, Roncato MA, Canoy AS, Rouquie D, Sarda X, Freyssinet G, Robaglia C., Plant Physiol. 141(2), 2006
PMID: 16632591
Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana.
Kawaguchi R, Girke T, Bray EA, Bailey-Serres J., Plant J. 38(5), 2004
PMID: 15144383
Kawaguchi R, Girke T, Bray EA, Bailey-Serres J., Plant J. 38(5), 2004
PMID: 15144383
Changes in mRNA stability associated with cold stress in Arabidopsis cells.
Chiba Y, Mineta K, Hirai MY, Suzuki Y, Kanaya S, Takahashi H, Onouchi H, Yamaguchi J, Naito S., Plant Cell Physiol. 54(2), 2012
PMID: 23220693
Chiba Y, Mineta K, Hirai MY, Suzuki Y, Kanaya S, Takahashi H, Onouchi H, Yamaguchi J, Naito S., Plant Cell Physiol. 54(2), 2012
PMID: 23220693
Transcriptome-wide characterization of miRNA-directed and non-miRNA-directed endonucleolytic cleavage using Degradome analysis under low ambient temperature in Phalaenopsis aphrodite subsp. formosana.
An FM, Chan MT., Plant Cell Physiol. 53(10), 2012
PMID: 22904110
An FM, Chan MT., Plant Cell Physiol. 53(10), 2012
PMID: 22904110
Identification of cold-inducible microRNAs in plants by transcriptome analysis.
Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W., Biochim. Biophys. Acta 1779(11), 2008
PMID: 18471443
Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W., Biochim. Biophys. Acta 1779(11), 2008
PMID: 18471443
Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana.
Liu HH, Tian X, Li YJ, Wu CA, Zheng CC., RNA 14(5), 2008
PMID: 18356539
Liu HH, Tian X, Li YJ, Wu CA, Zheng CC., RNA 14(5), 2008
PMID: 18356539
SEL-2, the C. elegans neurobeachin/LRBA homolog, is a negative regulator of lin-12/Notch activity and affects endosomal traffic in polarized epithelial cells.
de Souza N, Vallier LG, Fares H, Greenwald I., Development 134(4), 2007
PMID: 17215302
de Souza N, Vallier LG, Fares H, Greenwald I., Development 134(4), 2007
PMID: 17215302
The Drosophila BEACH family protein, blue cheese, links lysosomal axon transport with motor neuron degeneration.
Lim A, Kraut R., J. Neurosci. 29(4), 2009
PMID: 19176804
Lim A, Kraut R., J. Neurosci. 29(4), 2009
PMID: 19176804
Exome sequencing identifies NBEAL2 as the causative gene for gray platelet syndrome.
Albers CA, Cvejic A, Favier R, Bouwmans EE, Alessi MC, Bertone P, Jordan G, Kettleborough RN, Kiddle G, Kostadima M, Read RJ, Sipos B, Sivapalaratnam S, Smethurst PA, Stephens J, Voss K, Nurden A, Rendon A, Nurden P, Ouwehand WH., Nat. Genet. 43(8), 2011
PMID: 21765411
Albers CA, Cvejic A, Favier R, Bouwmans EE, Alessi MC, Bertone P, Jordan G, Kettleborough RN, Kiddle G, Kostadima M, Read RJ, Sipos B, Sivapalaratnam S, Smethurst PA, Stephens J, Voss K, Nurden A, Rendon A, Nurden P, Ouwehand WH., Nat. Genet. 43(8), 2011
PMID: 21765411
The BEACH protein LvsB is localized on lysosomes and postlysosomes and limits their fusion with early endosomes.
Kypri E, Schmauch C, Maniak M, De Lozanne A., Traffic 8(6), 2007
PMID: 17488289
Kypri E, Schmauch C, Maniak M, De Lozanne A., Traffic 8(6), 2007
PMID: 17488289
General translational repression by activators of mRNA decapping.
Coller J, Parker R., Cell 122(6), 2005
PMID: 16179257
Coller J, Parker R., Cell 122(6), 2005
PMID: 16179257
Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae.
Decker CJ, Teixeira D, Parker R., J. Cell Biol. 179(3), 2007
PMID: 17984320
Decker CJ, Teixeira D, Parker R., J. Cell Biol. 179(3), 2007
PMID: 17984320
A role for Q/N-rich aggregation-prone regions in P-body localization.
Reijns MA, Alexander RD, Spiller MP, Beggs JD., J. Cell. Sci. 121(Pt 15), 2008
PMID: 18611963
Reijns MA, Alexander RD, Spiller MP, Beggs JD., J. Cell. Sci. 121(Pt 15), 2008
PMID: 18611963
Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae.
Kshirsagar M, Parker R., Genetics 166(2), 2004
PMID: 15020463
Kshirsagar M, Parker R., Genetics 166(2), 2004
PMID: 15020463
mRNA decapping is promoted by an RNA-binding channel in Dcp2.
Deshmukh MV, Jones BN, Quang-Dang DU, Flinders J, Floor SN, Kim C, Jemielity J, Kalek M, Darzynkiewicz E, Gross JD., Mol. Cell 29(3), 2008
PMID: 18280238
Deshmukh MV, Jones BN, Quang-Dang DU, Flinders J, Floor SN, Kim C, Jemielity J, Kalek M, Darzynkiewicz E, Gross JD., Mol. Cell 29(3), 2008
PMID: 18280238
Structural basis of dcp2 recognition and activation by dcp1.
She M, Decker CJ, Svergun DI, Round A, Chen N, Muhlrad D, Parker R, Song H., Mol. Cell 29(3), 2008
PMID: 18280239
She M, Decker CJ, Svergun DI, Round A, Chen N, Muhlrad D, Parker R, Song H., Mol. Cell 29(3), 2008
PMID: 18280239
A split active site couples cap recognition by Dcp2 to activation.
Floor SN, Jones BN, Hernandez GA, Gross JD., Nat. Struct. Mol. Biol. 17(9), 2010
PMID: 20711189
Floor SN, Jones BN, Hernandez GA, Gross JD., Nat. Struct. Mol. Biol. 17(9), 2010
PMID: 20711189
Interdomain dynamics and coactivation of the mRNA decapping enzyme Dcp2 are mediated by a gatekeeper tryptophan.
Floor SN, Borja MS, Gross JD., Proc. Natl. Acad. Sci. U.S.A. 109(8), 2012
PMID: 22323607
Floor SN, Borja MS, Gross JD., Proc. Natl. Acad. Sci. U.S.A. 109(8), 2012
PMID: 22323607
Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms.
Nissan T, Rajyaguru P, She M, Song H, Parker R., Mol. Cell 39(5), 2010
PMID: 20832728
Nissan T, Rajyaguru P, She M, Song H, Parker R., Mol. Cell 39(5), 2010
PMID: 20832728
Dcp1 links coactivators of mRNA decapping to Dcp2 by proline recognition.
Borja MS, Piotukh K, Freund C, Gross JD., RNA 17(2), 2010
PMID: 21148770
Borja MS, Piotukh K, Freund C, Gross JD., RNA 17(2), 2010
PMID: 21148770
The structural basis of Edc3- and Scd6-mediated activation of the Dcp1:Dcp2 mRNA decapping complex.
Fromm SA, Truffault V, Kamenz J, Braun JE, Hoffmann NA, Izaurralde E, Sprangers R., EMBO J. 31(2), 2011
PMID: 22085934
Fromm SA, Truffault V, Kamenz J, Braun JE, Hoffmann NA, Izaurralde E, Sprangers R., EMBO J. 31(2), 2011
PMID: 22085934
Scd6 targets eIF4G to repress translation: RGG motif proteins as a class of eIF4G-binding proteins.
Rajyaguru P, She M, Parker R., Mol. Cell 45(2), 2012
PMID: 22284680
Rajyaguru P, She M, Parker R., Mol. Cell 45(2), 2012
PMID: 22284680
The DEAD-box protein Dhh1 promotes decapping by slowing ribosome movement.
Sweet T, Kovalak C, Coller J., PLoS Biol. 10(6), 2012
PMID: 22719226
Sweet T, Kovalak C, Coller J., PLoS Biol. 10(6), 2012
PMID: 22719226
Decapping and decay of messenger RNA occur in cytoplasmic processing bodies.
Sheth U, Parker R., Science 300(5620), 2003
PMID: 12730603
Sheth U, Parker R., Science 300(5620), 2003
PMID: 12730603
Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae.
Romero-Santacreu L, Moreno J, Perez-Ortin JE, Alepuz P., RNA 15(6), 2009
PMID: 19369426
Romero-Santacreu L, Moreno J, Perez-Ortin JE, Alepuz P., RNA 15(6), 2009
PMID: 19369426
Genome-wide role of P-bodies mRNP in mRNA decay of Saccharomyces cerevisiae
AUTHOR UNKNOWN, 2011
AUTHOR UNKNOWN, 2011
Neurobeachin, a regulator of synaptic protein targeting, is associated with body fat mass and feeding behavior in mice and body-mass index in humans.
Olszewski PK, Rozman J, Jacobsson JA, Rathkolb B, Stromberg S, Hans W, Klockars A, Alsio J, Riserus U, Becker L, Holter SM, Elvert R, Ehrhardt N, Gailus-Durner V, Fuchs H, Fredriksson R, Wolf E, Klopstock T, Wurst W, Levine AS, Marcus C, de Angelis MH, Klingenspor M, Schioth HB, Kilimann MW., PLoS Genet. 8(3), 2012
PMID: 22438821
Olszewski PK, Rozman J, Jacobsson JA, Rathkolb B, Stromberg S, Hans W, Klockars A, Alsio J, Riserus U, Becker L, Holter SM, Elvert R, Ehrhardt N, Gailus-Durner V, Fuchs H, Fredriksson R, Wolf E, Klopstock T, Wurst W, Levine AS, Marcus C, de Angelis MH, Klingenspor M, Schioth HB, Kilimann MW., PLoS Genet. 8(3), 2012
PMID: 22438821
FAN stimulates TNF(alpha)-induced gene expression, leukocyte recruitment, and humoral response.
Montfort A, de Badts B, Douin-Echinard V, Martin PG, Iacovoni J, Nevoit C, Therville N, Garcia V, Bertrand MA, Bessieres MH, Trombe MC, Levade T, Benoist H, Segui B., J. Immunol. 183(8), 2009
PMID: 19786552
Montfort A, de Badts B, Douin-Echinard V, Martin PG, Iacovoni J, Nevoit C, Therville N, Garcia V, Bertrand MA, Bessieres MH, Trombe MC, Levade T, Benoist H, Segui B., J. Immunol. 183(8), 2009
PMID: 19786552
Arabidopsis thaliana floral dip transformation method.
Bent A., Methods Mol. Biol. 343(), 2006
PMID: 16988336
Bent A., Methods Mol. Biol. 343(), 2006
PMID: 16988336
What Is Stress? Dose-Response Effects in Commonly Used in Vitro Stress Assays.
Claeys H, Van Landeghem S, Dubois M, Maleux K, Inze D., Plant Physiol. 165(2), 2014
PMID: 24710067
Claeys H, Van Landeghem S, Dubois M, Maleux K, Inze D., Plant Physiol. 165(2), 2014
PMID: 24710067
RACK1 is a negative regulator of ABA responses in Arabidopsis.
Guo J, Wang J, Xi L, Huang WD, Liang J, Chen JG., J. Exp. Bot. 60(13), 2009
PMID: 19584117
Guo J, Wang J, Xi L, Huang WD, Liang J, Chen JG., J. Exp. Bot. 60(13), 2009
PMID: 19584117
Simple and highly efficient BAC recombineering using galK selection.
Warming S, Costantino N, Court DL, Jenkins NA, Copeland NG., Nucleic Acids Res. 33(4), 2005
PMID: 15731329
Warming S, Costantino N, Court DL, Jenkins NA, Copeland NG., Nucleic Acids Res. 33(4), 2005
PMID: 15731329
PtdIns(4,5)P-restricted plasma membrane localization of FAN is involved in TNF-induced actin reorganization.
Haubert D, Gharib N, Rivero F, Wiegmann K, Hosel M, Kronke M, Kashkar H., EMBO J. 26(14), 2007
PMID: 17599063
Haubert D, Gharib N, Rivero F, Wiegmann K, Hosel M, Kronke M, Kashkar H., EMBO J. 26(14), 2007
PMID: 17599063
Arabidopsis SENESCENCE-ASSOCIATED GENE101 stabilizes and signals within an ENHANCED DISEASE SUSCEPTIBILITY1 complex in plant innate immunity.
Feys BJ, Wiermer M, Bhat RA, Moisan LJ, Medina-Escobar N, Neu C, Cabral A, Parker JE., Plant Cell 17(9), 2005
PMID: 16040633
Feys BJ, Wiermer M, Bhat RA, Moisan LJ, Medina-Escobar N, Neu C, Cabral A, Parker JE., Plant Cell 17(9), 2005
PMID: 16040633
Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure.
Gietz RD, Schiestl RH, Willems AR, Woods RA., Yeast 11(4), 1995
PMID: 7785336
Gietz RD, Schiestl RH, Willems AR, Woods RA., Yeast 11(4), 1995
PMID: 7785336
In vivo analysis of plant promoters and transcription factors by agroinfiltration of tobacco leaves.
Yang Y, Li R, Qi M., Plant J. 22(6), 2000
PMID: 10886774
Yang Y, Li R, Qi M., Plant J. 22(6), 2000
PMID: 10886774
Arabidopsis CROOKED encodes for the smallest subunit of the ARP2/3 complex and controls cell shape by region specific fine F-actin formation.
Mathur J, Mathur N, Kirik V, Kernebeck B, Srinivas BP, Hulskamp M., Development 130(14), 2003
PMID: 12783786
Mathur J, Mathur N, Kirik V, Kernebeck B, Srinivas BP, Hulskamp M., Development 130(14), 2003
PMID: 12783786
A cautionary note on the use of split-YFP/BiFC in plant protein-protein interaction studies.
Horstman A, Tonaco IA, Boutilier K, Immink RG., Int J Mol Sci 15(6), 2014
PMID: 24886811
Horstman A, Tonaco IA, Boutilier K, Immink RG., Int J Mol Sci 15(6), 2014
PMID: 24886811
Two-sided fluorescence resonance energy transfer for assessing molecular interactions of up to three distinct species in confocal microscopy.
Fazekas Z, Petras M, Fabian A, Palyi-Krekk Z, Nagy P, Damjanovich S, Vereb G, Szollosi J., Cytometry A 73(3), 2008
PMID: 18044751
Fazekas Z, Petras M, Fabian A, Palyi-Krekk Z, Nagy P, Damjanovich S, Vereb G, Szollosi J., Cytometry A 73(3), 2008
PMID: 18044751
Sulfamethazine suppresses epigenetic silencing in Arabidopsis by impairing folate synthesis.
Zhang H, Deng X, Miki D, Cutler S, La H, Hou YJ, Oh J, Zhu JK., Plant Cell 24(3), 2012
PMID: 22447685
Zhang H, Deng X, Miki D, Cutler S, La H, Hou YJ, Oh J, Zhu JK., Plant Cell 24(3), 2012
PMID: 22447685
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Robinson MD, McCarthy DJ, Smyth GK., Bioinformatics 26(1), 2009
PMID: 19910308
Robinson MD, McCarthy DJ, Smyth GK., Bioinformatics 26(1), 2009
PMID: 19910308
A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize
AUTHOR UNKNOWN, 2009
AUTHOR UNKNOWN, 2009
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.
Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z., BMC Bioinformatics 10(), 2009
PMID: 19192299
Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z., BMC Bioinformatics 10(), 2009
PMID: 19192299
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.
Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M., Plant J. 37(6), 2004
PMID: 14996223
Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M., Plant J. 37(6), 2004
PMID: 14996223
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