A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies

Yu J, Blom J, Glaeser SP, Jaenicke S, Juhre T, Rupp O, Schwengers O, Spänig S, Goesmann A (2017)
Journal of Biotechnology 261: 2-9.

Zeitschriftenaufsatz | E-Veröff. vor dem Druck | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Yu, JiaUniBi; Blom, Jochen; Glaeser, S.P.; Jaenicke, S.; Juhre, T.; Rupp, O.; Schwengers, O.; Spänig, S.; Goesmann, Alexander
Abstract / Bemerkung
The rapid development of next generation sequencing technology has greatly increased the amount of available microbial genomes. As a result of this development, there is a rising demand for fast and automated approaches in analyzing these genomes in a comparative way. Whole genome sequencing also bears a huge potential for obtaining a higher resolution in phylogenetic and taxonomic classification. During the last decade, several software tools and platforms have been developed in the field of comparative genomics. In this manuscript, we review the most commonly used platforms and approaches for ortholog group analyses with a focus on their potential for phylogenetic and taxonomic research. Furthermore, we describe the latest improvements of the EDGAR platform for comparative genome analyses and present recent examples of its application for the phylogenomic analysis of different taxa. Finally, we illustrate the role of the EDGAR platform as part of the BiGi Center for Microbial Bioinformatics within the German network on Bioinformatics Infrastructure (de.NBI).
Stichworte
Comparative genomics; Taxonomic classification; Phylogenetic analysis; Next generation sequencing
Erscheinungsjahr
2017
Zeitschriftentitel
Journal of Biotechnology
Band
261
Seite(n)
2-9
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2913916

Zitieren

Yu J, Blom J, Glaeser SP, et al. A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies. Journal of Biotechnology. 2017;261:2-9.
Yu, J., Blom, J., Glaeser, S. P., Jaenicke, S., Juhre, T., Rupp, O., Schwengers, O., et al. (2017). A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies. Journal of Biotechnology, 261, 2-9. doi:10.1016/j.jbiotec.2017.07.010
Yu, J., Blom, J., Glaeser, S. P., Jaenicke, S., Juhre, T., Rupp, O., Schwengers, O., Spänig, S., and Goesmann, A. (2017). A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies. Journal of Biotechnology 261, 2-9.
Yu, J., et al., 2017. A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies. Journal of Biotechnology, 261, p 2-9.
J. Yu, et al., “A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies”, Journal of Biotechnology, vol. 261, 2017, pp. 2-9.
Yu, J., Blom, J., Glaeser, S.P., Jaenicke, S., Juhre, T., Rupp, O., Schwengers, O., Spänig, S., Goesmann, A.: A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies. Journal of Biotechnology. 261, 2-9 (2017).
Yu, Jia, Blom, Jochen, Glaeser, S.P., Jaenicke, S., Juhre, T., Rupp, O., Schwengers, O., Spänig, S., and Goesmann, Alexander. “A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies”. Journal of Biotechnology 261 (2017): 2-9.

1 Zitation in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 28705636
PubMed | Europe PMC

Suchen in

Google Scholar