On quantitative effects of RNA shape abstraction

Nebel, Markus; Scheid, Anika

On quantitative effects of RNA shape abstraction

Nebel M, Scheid A (2009)
Theory in Biosciences 128(4): 211--225.

Zeitschriftenaufsatz | Englisch

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DOI

https://doi.org/10.1007/s12064-009-0074-z

Autor*in

Nebel, Markus^UniBi; Scheid, Anika

Einrichtung

Technische Fakultät

Erscheinungsjahr

2009

Zeitschriftentitel

Theory in Biosciences

Band

128

Ausgabe

4

Seite(n)

211--225

ISSN

1431-7613

Page URI

https://pub.uni-bielefeld.de/record/2910028

Zitieren

Nebel M, Scheid A. On quantitative effects of RNA shape abstraction. Theory in Biosciences. 2009;128(4):211--225.

Nebel, M., & Scheid, A. (2009). On quantitative effects of RNA shape abstraction. Theory in Biosciences, 128(4), 211--225. doi:10.1007/s12064-009-0074-z

Nebel, Markus, and Scheid, Anika. 2009. “On quantitative effects of RNA shape abstraction”. Theory in Biosciences 128 (4): 211--225.

Nebel, M., and Scheid, A. (2009). On quantitative effects of RNA shape abstraction. Theory in Biosciences 128, 211--225.

Nebel, M., & Scheid, A., 2009. On quantitative effects of RNA shape abstraction. Theory in Biosciences, 128(4), p 211--225.

M. Nebel and A. Scheid, “On quantitative effects of RNA shape abstraction”, Theory in Biosciences, vol. 128, 2009, pp. 211--225.

Nebel, M., Scheid, A.: On quantitative effects of RNA shape abstraction. Theory in Biosciences. 128, 211--225 (2009).

Nebel, Markus, and Scheid, Anika. “On quantitative effects of RNA shape abstraction”. Theory in Biosciences 128.4 (2009): 211--225.

Daten bereitgestellt von European Bioinformatics Institute (EBI)

7 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Pareto optimization in algebraic dynamic programming.
Saule C, Giegerich R., Algorithms Mol Biol 10(), 2015
PMID: 26150892

Analysing RNA-kinetics based on folding space abstraction.
Huang J, Voß B., BMC Bioinformatics 15(), 2014
PMID: 24575751

Abstract folding space analysis based on helices.
Huang J, Backofen R, Voß B., RNA 18(12), 2012
PMID: 23104999

Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction.
Janssen S, Schudoma C, Steger G, Giegerich R., BMC Bioinformatics 12(), 2011
PMID: 22051375

Evaluation of a sophisticated SCFG design for RNA secondary structure prediction.
Nebel ME, Scheid A., Theory Biosci 130(4), 2011
PMID: 22135038

Faster computation of exact RNA shape probabilities.
Janssen S, Giegerich R., Bioinformatics 26(5), 2010
PMID: 20080511

Shapes of RNA pseudoknot structures.
Reidys CM, Wang RR., J Comput Biol 17(11), 2010
PMID: 20868269

34 References

Daten bereitgestellt von Europe PubMed Central.

Prediction of RNA secondary structure, including pseudoknotting, by computer simulation.
Abrahams JP, van den Berg M, van Batenburg E, Pleij C., Nucleic Acids Res. 18(10), 1990
PMID: 1693421

AUTHOR UNKNOWN, 0

N, 1963

Sfold web server for statistical folding and rational design of nucleic acids.
Ding Y, Chan CY, Lawrence CE., Nucleic Acids Res. 32(Web Server issue), 2004
PMID: 15215366

A statistical sampling algorithm for RNA secondary structure prediction.
Ding Y, Lawrence CE., Nucleic Acids Res. 31(24), 2003
PMID: 14654704

Structural and functional aspects of RNA pseudoknots.
Dam E, Pleij K, Draper D., Biochemistry 31(47), 1992
PMID: 1280160

AUTHOR UNKNOWN, 0

Abstract shapes of RNA.
Giegerich R, Voss B, Rehmsmeier M., Nucleic Acids Res. 32(16), 2004
PMID: 15371549

RR, Proc Natl Acad Sci USA 87(), 1990

AUTHOR UNKNOWN, 0

DE, App Math Lett 2(), 1989

Asymptotics of RNA shapes.
Lorenz WA, Ponty Y, Clote P., J. Comput. Biol. 15(1), 2008
PMID: 18257676

Investigation of the Bernoulli model for RNA secondary structures.
Nebel ME., Bull. Math. Biol. 66(5), 2004
PMID: 15294413

R, Proc Natl Acad Sci USA 77(11), 1980

R, SIAM J Appl Math 35(), 1978

RNA pseudoknots: structure, detection, and prediction.
Pleij CW, Bosch L., Meth. Enzymol. 180(), 1989
PMID: 2482419

CW, Curr Opin Struct Biol 4(), 1994

Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
Reeder J, Giegerich R., Bioinformatics 21(17), 2005
PMID: 16020472

AUTHOR UNKNOWN, 0

RNAshapes: an integrated RNA analysis package based on abstract shapes.
Steffen P, Voss B, Rehmsmeier M, Reeder J, Giegerich R., Bioinformatics 22(4), 2005
PMID: 16357029

G, Math Med Biol Lect Notes Biomath 57(), 1985

AUTHOR UNKNOWN, 0

MS, Adv Math Suppl Stud 1(), 1978

Complete suboptimal folding of RNA and the stability of secondary structures.
Wuchty S, Fontana W, Hofacker IL, Schuster P., Biopolymers 49(2), 1999
PMID: 10070264

AUTHOR UNKNOWN, 0

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
Zuker M, Stiegler P., Nucleic Acids Res. 9(1), 1981
PMID: 6163133

M, Bull Math Biol 46(), 1984

On finding all suboptimal foldings of an RNA molecule.
Zuker M., Science 244(4900), 1989
PMID: 2468181

Mfold web server for nucleic acid folding and hybridization prediction.
Zuker M., Nucleic Acids Res. 31(13), 2003
PMID: 12824337

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