Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model

Nebel M, Scheid A (2011)
IEEE/ACM Trans. Comput. Biology Bioinform. 8(6): 1468--1482.

Zeitschriftenaufsatz | Englisch
 
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DOI
Autor*in
Nebel, MarkusUniBi; Scheid, Anika
Einrichtung
Technische Fakultät
Erscheinungsjahr
2011
Zeitschriftentitel
IEEE/ACM Trans. Comput. Biology Bioinform.
Band
8
Ausgabe
6
Seite(n)
1468--1482
ISSN
1545-5963
Page URI
https://pub.uni-bielefeld.de/record/2910021

Zitieren

Nebel M, Scheid A. Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model. IEEE/ACM Trans. Comput. Biology Bioinform. 2011;8(6):1468--1482.
Nebel, M., & Scheid, A. (2011). Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model. IEEE/ACM Trans. Comput. Biology Bioinform., 8(6), 1468--1482. doi:10.1109/TCBB.2010.126
Nebel, Markus, and Scheid, Anika. 2011. “Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model”. IEEE/ACM Trans. Comput. Biology Bioinform. 8 (6): 1468--1482.
Nebel, M., and Scheid, A. (2011). Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model. IEEE/ACM Trans. Comput. Biology Bioinform. 8, 1468--1482.
Nebel, M., & Scheid, A., 2011. Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model. IEEE/ACM Trans. Comput. Biology Bioinform., 8(6), p 1468--1482.
M. Nebel and A. Scheid, “Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model”, IEEE/ACM Trans. Comput. Biology Bioinform., vol. 8, 2011, pp. 1468--1482.
Nebel, M., Scheid, A.: Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model. IEEE/ACM Trans. Comput. Biology Bioinform. 8, 1468--1482 (2011).
Nebel, Markus, and Scheid, Anika. “Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model”. IEEE/ACM Trans. Comput. Biology Bioinform. 8.6 (2011): 1468--1482.

1 Zitation in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

An RNA secondary structure prediction method based on minimum and suboptimal free energy structures.
Fu H, Yang L, Zhang X., J Theor Biol 380(), 2015
PMID: 26100179

40 References

Daten bereitgestellt von Europe PubMed Central.

Secondary Structure of Single-Stranded Nucleic Acids
waterman, Advances in Math Supplementary Studies 1(), 1978

AUTHOR UNKNOWN, 0
On Some New Sequences Generalizing the Catalan and Motzkin Numbers
stein, Discrete Math 26(), 1978

sedgewick, An Introduction to the Analysis of Algorithms (), 2001

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
Combinatorial properties of RNA secondary structures.
Nebel ME., J. Comput. Biol. 9(3), 2002
PMID: 12162892

AUTHOR UNKNOWN, 0

chomsky, Computer Programming and Formal Systems (), 1963
Investigation of the Bernoulli model for RNA secondary structures.
Nebel ME., Bull. Math. Biol. 66(5), 2004
PMID: 15294413
Identifying Good Predictions of RNA Secondary Structure
nebel, Proc Pacific Symp Biocomputing (), 2004
On a Statistical Filter for RNA Secondary Structures
nebel, 2002
The European Large Subunit Ribosomal RNA Database.
Wuyts J, De Rijk P, Van de Peer Y, Winkelmans T, De Wachter R., Nucleic Acids Res. 29(1), 2001
PMID: 11125083
The European database on small subunit ribosomal RNA.
Wuyts J, Van de Peer Y, Winkelmans T, De Wachter R., Nucleic Acids Res. 30(1), 2002
PMID: 11752288
5S Ribosomal RNA Database.
Szymanski M, Barciszewska MZ, Erdmann VA, Barciszewski J., Nucleic Acids Res. 30(1), 2002
PMID: 11752286
Compilation of tRNA sequences and sequences of tRNA genes.
Sprinzl M, Horn C, Brown M, Ioudovitch A, Steinberg S., Nucleic Acids Res. 26(1), 1998
PMID: 9399820

hofri, Analysis of Algorithms Computational Methods and Mathematical Tools (), 1995
Random generation of RNA secondary structures according to native distributions.
Nebel ME, Scheid A, Weinberg F., Algorithms Mol Biol 6(), 2011
PMID: 21992500
Non Uniform Generation of Combinatorial Objects
weinberg, 2010

zuker, Lectures on Mathematics in the Life Sciences 17(), 1986

AUTHOR UNKNOWN, 0

sankoff, Time Warps String Edits and Macromolecules The Theory and Practice of Sequence Comparison (), 1983
RNA secondary structure prediction using stochastic context-free grammars and evolutionary history.
Knudsen B, Hein J., Bioinformatics 15(6), 1999
PMID: 10383470
Pfold: RNA secondary structure prediction using stochastic context-free grammars.
Knudsen B, Hein J., Nucleic Acids Res. 31(13), 2003
PMID: 12824339

AUTHOR UNKNOWN, 0
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
Zuker M, Stiegler P., Nucleic Acids Res. 9(1), 1981
PMID: 6163133
Mfold web server for nucleic acid folding and hybridization prediction.
Zuker M., Nucleic Acids Res. 31(13), 2003
PMID: 12824337

zuker, RNA Processing 180(), 1989
Complete suboptimal folding of RNA and the stability of secondary structures.
Wuchty S, Fontana W, Hofacker IL, Schuster P., Biopolymers 49(2), 1999
PMID: 10070264
Vienna RNA secondary structure server.
Hofacker IL., Nucleic Acids Res. 31(13), 2003
PMID: 12824340
On finding all suboptimal foldings of an RNA molecule.
Zuker M., Science 244(4900), 1989
PMID: 2468181
Stability of ribonucleic acid double-stranded helices.
Borer PN, Dengler B, Tinoco I Jr, Uhlenbeck OC., J. Mol. Biol. 86(4), 1974
PMID: 4427357
Free energy of imperfect nucleic acid helices. II. Small hairpin loops.
Gralla J, Crothers DM., J. Mol. Biol. 73(4), 1973
PMID: 4715014
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.
Mathews DH, Sabina J, Zuker M, Turner DH., J. Mol. Biol. 288(5), 1999
PMID: 10329189
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs.
Xia T, SantaLucia J Jr, Burkard ME, Kierzek R, Schroeder SJ, Jiao X, Cox C, Turner DH., Biochemistry 37(42), 1998
PMID: 9778347
Stochastic context-free grammars for tRNA modeling.
Sakakibara Y, Brown M, Hughey R, Mian IS, Sjolander K, Underwood RC, Haussler D., Nucleic Acids Res. 22(23), 1994
PMID: 7800507
Predicting thermodynamic properties of RNA.
Serra MJ, Turner DH., Meth. Enzymol. 259(), 1995
PMID: 8538457
Estimation of Probabilistic Context-Free Grammars
chi, Computational Linguistics 24(), 1998

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
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