Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population

Hoffman J, Kowalski GJ, Klimova A, Eberhart-Phillips L, Staniland IJ, Baylis AMM (2016)
Royal Society Open Science 3(7): 160291.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Hoffman, JosephUniBi ; Kowalski, G. J.; Klimova, A.; Eberhart-Phillips, LukeUniBi; Staniland, I. J.; Baylis, A. M. M.
Abstract / Bemerkung
Understanding the causes of population decline is crucial for conservation management. We therefore used genetic analysis both to provide baseline data on population structure and to evaluate hypotheses for the catastrophic decline of the South American sea lion (Otaria flavescens) at the Falkland Islands (Malvinas) in the South Atlantic. We genotyped 259 animals from 23 colonies across the Falklands at 281 bp of the mitochondrial hypervariable region and 22 microsatellites. A weak signature of population structure was detected, genetic diversity was moderately high in comparison with other pinniped species, and no evidence was found for the decline being associated with a strong demographic bottleneck. By combining our mitochondrial data with published sequences from Argentina, Brazil, Chile and Peru, we also uncovered strong maternally directed population structure across the geographical range of the species. In particular, very few shared haplotypes were found between the Falklands and South America, and this was reflected in correspondingly low migration rate estimates. These findings do not support the prominent hypothesis that the decline was caused by migration to Argentina, where large-scale commercial harvesting operations claimed over half a million animals. Thus, our study not only provides baseline data for conservation management but also reveals the potential for genetic studies to shed light upon long-standing questions pertaining to the history and fate of natural populations.
Stichworte
population structure; anthropogenic exploitation; historical demography; phylogeography; pinniped
Erscheinungsjahr
2016
Zeitschriftentitel
Royal Society Open Science
Band
3
Ausgabe
7
Art.-Nr.
160291
ISSN
2054-5703
Page URI
https://pub.uni-bielefeld.de/record/2906558

Zitieren

Hoffman J, Kowalski GJ, Klimova A, Eberhart-Phillips L, Staniland IJ, Baylis AMM. Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population. Royal Society Open Science. 2016;3(7): 160291.
Hoffman, J., Kowalski, G. J., Klimova, A., Eberhart-Phillips, L., Staniland, I. J., & Baylis, A. M. M. (2016). Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population. Royal Society Open Science, 3(7), 160291. doi:10.1098/rsos.160291
Hoffman, Joseph, Kowalski, G. J., Klimova, A., Eberhart-Phillips, Luke, Staniland, I. J., and Baylis, A. M. M. 2016. “Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population”. Royal Society Open Science 3 (7): 160291.
Hoffman, J., Kowalski, G. J., Klimova, A., Eberhart-Phillips, L., Staniland, I. J., and Baylis, A. M. M. (2016). Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population. Royal Society Open Science 3:160291.
Hoffman, J., et al., 2016. Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population. Royal Society Open Science, 3(7): 160291.
J. Hoffman, et al., “Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population”, Royal Society Open Science, vol. 3, 2016, : 160291.
Hoffman, J., Kowalski, G.J., Klimova, A., Eberhart-Phillips, L., Staniland, I.J., Baylis, A.M.M.: Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population. Royal Society Open Science. 3, : 160291 (2016).
Hoffman, Joseph, Kowalski, G. J., Klimova, A., Eberhart-Phillips, Luke, Staniland, I. J., and Baylis, A. M. M. “Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population”. Royal Society Open Science 3.7 (2016): 160291.

3 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Habitat use and spatial fidelity of male South American sea lions during the nonbreeding period.
Baylis AMM, Orben RA, Costa DP, Tierney M, Brickle P, Staniland IJ., Ecol Evol 7(11), 2017
PMID: 28616194
Ancient female philopatry, asymmetric male gene flow, and synchronous population expansion support the influence of climatic oscillations on the evolution of South American sea lion (Otaria flavescens).
Oliveira LR, Gehara MCM, Fraga LD, Lopes F, Túnez JI, Cassini MH, Majluf P, Cárdenas-Alayza S, Pavés HJ, Crespo EA, García N, Loizaga de Castro R, Hoelzel AR, Sepúlveda M, Olavarría C, Valiati VH, Quiñones R, Pérez-Alvarez MJ, Ott PH, Bonatto SL., PLoS One 12(6), 2017
PMID: 28654647
Analysing the natural population growth of a large marine mammal after a depletive harvest.
Romero MA, Grandi MF, Koen-Alonso M, Svendsen G, Ocampo Reinaldo M, García NA, Dans SL, González R, Crespo EA., Sci Rep 7(1), 2017
PMID: 28706228

96 References

Daten bereitgestellt von Europe PubMed Central.

The expansion of conservation genetics.
DeSalle R, Amato G., Nat. Rev. Genet. 5(9), 2004
PMID: 15372093
Genomics and the future of conservation genetics.
Allendorf FW, Hohenlohe PA, Luikart G., Nat. Rev. Genet. 11(10), 2010
PMID: 20847747
Conservation genetics in the new molecular age
Wayne RK, Morin PA., 2004
Strong population genetic structure in a broadcast-spawning Antarctic marine invertebrate.
Hoffman JI, Peck LS, Linse K, Clarke A., J. Hered. 102(1), 2010
PMID: 20720149
Factors affecting levels of genetic diversity in natural populations.
Amos W, Harwood J., Philos. Trans. R. Soc. Lond., B, Biol. Sci. 353(1366), 1998
PMID: 9533122
Conservation genetics: where are we now?
Hedrick PW., 2001
Catastrophic events and recovery from low densities in populations of otariids: implications for risk of extinction
Gerber LR, Hilborn R., 2001
Genetic status of an endemic marine mammal, the Australian fur seal, following historical harvesting
Lancaster ML, Arnould JPY, Kirkwood R., 2009
Population recovery of the New Zealand fur seal in southern Australia: a molecular DNA analysis
Berry O, Spiller LC, Campbell R, Hitchen Y, Kennington WJ., 2012
A second report on the southern sea lion, Otaria byronia
Hamilton JE., 1939
Sealion surveys in the Falklands
Strange I., 1979
Disentangling the cause of a catastrophic population decline in a large marine mammal.
Baylis AM, Orben RA, Arnould JP, Christiansen F, Hays GC, Staniland IJ., Ecology 96(10), 2015
PMID: 26649403
The size and status of the population of southern sea lions Otaria flavescens in the Falkland Islands
Thompson D, Strange I, Riddy M, Duck CD., 2005

Godoy J., 1963
Legacy of industrial whaling: could killer whales be responsible for declines in Southern Hemisphere sea lions, elephant seals and minke whales? In
Branch T, Williams TM., 2006
Mitochondrial control region haplotypes of the South American sea lion Otaria flavescens (Shaw, 1800).
Artico LO, Bianchini A, Grubel KS, Monteiro DS, Estima SC, Oliveira LR, Bonatto SL, Marins LF., Braz. J. Med. Biol. Res. 43(9), 2010
PMID: 20838754
Mitochondrial and microsatellite assessment of population structure of South American sea lion (Otaria flavescens) in the Southwestern Atlantic Ocean
Feijoo M, Lessa EP, Loizaga R, Crespo EA., 2011
Genetic relatedness in two Southern sea lion (Otaria flavescens) rookeries in the southwestern Atlantic
Szapkievich VB, Cappozzo HL, Crespo EA, Bernabeu RO, Comas C, Mudry MD., 1999
Status, population trend and genetic structure of South American fur seals, Arctocephalus australis, in southwestern Atlantic waters
Crespo EA, Schiavini ACM, Garcia NA, Franco-Trecu V, Goodall RNP, Rodriguez D, Morgante JS, De LR., 2015

Sambrook J, Fritsch EF, Maniatis T., 1989
Postsealing genetic variation and population structure of two species of fur seal (Arctocephalus gazella and A. tropicalis).
Wynen LP, Goldsworthy SD, Guinet C, Bester MN, Boyd IL, Gjertz I, Hofmeyr GJ, White RW, Slade R., Mol. Ecol. 9(3), 2000
PMID: 10736028
BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT
Hall TA., 1999
Interspecific microsatellite markers for the study of pinniped populations.
Gemmell NJ, Allen PJ, Goodman SJ, Reed JZ., Mol. Ecol. 6(7), 1997
PMID: 9226947
Microsatellites from the Atlantic walrus Odobenus rosmarus rosmarus.
Buchanan FC, Maiers LD, Thue TD, De March BG, Stewart RE., Mol. Ecol. 7(8), 1998
PMID: 9711867

Wells DA, Hoffman JI, Amos W., 0
New polymorphic microsatellite markers for California sea lions (Zalophus californianus)
Hernandez-Velazquez FD, Galindo-Sanchez CE, Taylor MI, De J, Cote IM, Schramm Y, Aurioles-Gamboa D, Rico C., 2005
Characterization of eight microsatellite loci in Steller sea lions (Eumetopias jubatus)
HUEBINGER RM, LOUIS EEJ, GELATT T, REA LD, BICKHAM JW., Mol. Ecol. Notes 7(6), 2007
PMID: IND43974463

Schneider S, Roessli D, Excoffier L., 2000
Genepop (v. 1.2)— population genetics software for exact tests of ecumenicism
Raymond M, Rousset F., 1995
Controlling the false discovery rate: a practical and powerful approach to multiple testing
Benjamini Y, Hochberg Y., 1995
Statistical significance for genomewide studies.
Storey JD, Tibshirani R., Proc. Natl. Acad. Sci. U.S.A. 100(16), 2003
PMID: 12883005
FSTAT (version 1.2): a computer program to calculate F-statistics
Goudet J., 1995
GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms
Meirmans PG, Van PH., 2004
Microsatellite null alleles and estimation of population differentiation.
Chapuis MP, Estoup A., Mol. Biol. Evol. 24(3), 2006
PMID: 17150975
Maximum likelihood from incomplete data via the EM algorithm
Dempster AP, Laird NM, Rubin DB., 1977
Estimating F-statistics for the analysis of population structure
Weir BS, Cockerham CC., 1984
Inference of population structure using multilocus genotype data.
Pritchard JK, Stephens M, Donnelly P., Genetics 155(2), 2000
PMID: 10835412
Population growth makes waves in the distribution of pairwise genetic differences.
Rogers AR, Harpending H., Mol. Biol. Evol. 9(3), 1992
PMID: 1316531
Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data
Luikart G, Cornuet JM., 1998
BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data
Piry S, Luikart G, Cornuet J-M., 1999
Reliability of genetic bottleneck tests for detecting recent population declines.
Peery MZ, Kirby R, Reid BN, Stoelting R, Doucet-Beer E, Robinson S, Vasquez-Carrillo C, Pauli JN, Palsboll PJ., Mol. Ecol. 21(14), 2012
PMID: 22646281
Stepwise mutation model and distribution of allelic frequencies in a finite population.
Kimura M, Ohta T., Proc. Natl. Acad. Sci. U.S.A. 75(6), 1978
PMID: 275857
Mutational processes of simple-sequence repeat loci in human populations.
Di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB., Proc. Natl. Acad. Sci. U.S.A. 91(8), 1994
PMID: 8159720
Distortion of allele frequency distributions provides a test for recent population bottlenecks.
Luikart G, Allendorf FW, Cornuet JM, Sherwin WB., J. Hered. 89(3), 1998
PMID: 9656466
Detection of reduction in population size using data from microsatellite loci.
Garza JC, Williamson EG., Mol. Ecol. 10(2), 2001
PMID: 11298947
Mutation of human short tandem repeats.
Weber JL, Wong C., Hum. Mol. Genet. 2(8), 1993
PMID: 8401493
Approximate Bayesian computation in population genetics.
Beaumont MA, Zhang W, Balding DJ., Genetics 162(4), 2002
PMID: 12524368
Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation.
Cornuet JM, Santos F, Beaumont MA, Robert CP, Marin JM, Balding DJ, Guillemaud T, Estoup A., Bioinformatics 24(23), 2008
PMID: 18842597
Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v. 1.0)
Cornuet JM, Ravigne V, Estoup A., 2010
Assessing substitution patterns, rates and homoplasy at HVRI of Steller sea lions, Eumetopias jubatus.
Phillips CD, Trujillo RG, Gelatt TS, Smolen MJ, Matson CW, Honeycutt RL, Patton JC, Bickham JW., Mol. Ecol. 18(16), 2009
PMID: 19627492
Median-joining networks for inferring intraspecific phylogenies.
Bandelt HJ, Forster P, Rohl A., Mol. Biol. Evol. 16(1), 1999
PMID: 10331250
Comparison of methods for detecting bottlenecks from microsatellite loci
Williamson-Natesan EG., Conserv. Genet. 6(4), 2005
PMID: IND43971996
Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation
Latch EK, Dharmarajan G, Glaubitz JC, Rhodes OE., 2006
Mitochondrial and microsatellite DNA analyses of harbour seal population structure in the northeast Pacific Ocean
Burg TM, Trites AW, Smith MJ., 1999
Fine-scale matrilineal population structure in the Galapagos fur seal and its implications for conservation management
Lopes F, Hoffman JI, Valiati VH, Bonatto SL, Wolf JBW, Trillmich F, Oliveira LR., Conserv. Genet. 16(5), 2015
PMID: IND604394511
Travel for sex: long-range breeding dispersal and winter haulout fidelity in southern sea lion males
Giardino GV, Mandiola MA, Bastida J, Denuncio PE, Bastida RO, Rodriguez DH., 2015
Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation.
Hoffman JI, Dasmahapatra KK, Amos W, Phillips CD, Gelatt TS, Bickham JW., Mol. Ecol. 18(14), 2009
PMID: 19500256
Tracing early stages of species differentiation: ecological, morphological and genetic divergence of Galapagos sea lion populations.
Wolf JB, Harrod C, Brunner S, Salazar S, Trillmich F, Tautz D., BMC Evol. Biol. 8(), 2008
PMID: 18485220
Population structure of adult female Australian sea lions is driven by fine-scale foraging site fidelity
Lowther AD, Harcourt RG, Goldsworthy SD, Stow A., 2012
Species conservation and systematics: the dilemma of subspecies
Ryder OA., 1986
Defining 'Evolutionarily Significant Units' for conservation.
Moritz C., Trends Ecol. Evol. (Amst.) 9(10), 1994
PMID: 21236896
Mitochondrial DNA sequence data of the Cape fur seal (Arctocephalus pusillus pusillus) suggest that population numbers may be affected by climatic shifts
Matthee CA, Fourie F, Oosthuizen WH, Meyer MA, Tolley KA., 2006
Rapid response of a marine mammal species to Holocene climate and habitat change
De M, Hall BL, Chauke LF, Baroni C, Koch PL, Hoelzel AR., 2009
Global population structure and demographic history of the grey seal.
Klimova A, Phillips CD, Fietz K, Olsen MT, Harwood J, Amos W, Hoffman JI., Mol. Ecol. 23(16), 2014
PMID: 25041117
Bayesian inference of a historical bottleneck in a heavily exploited marine mammal.
Hoffman JI, Grant SM, Forcada J, Phillips CD., Mol. Ecol. 20(19), 2011
PMID: 21895820
Foraging behaviour and diet of lactating female southern sea lions (Otaria flavescens) in the Falkland Islands
Thompson D, Duck CD, McConnell B, Garrett J., 1998
Morphological and genetic evidence for two evolutionarily significant units (ESUs) in the South American fur seal, Arctocephalus gazella
de Oliveira LR, Hoffman JI, Hingst-Zaher E, Majluf P, Muelbert MMC, Morgante JS, Amos W., Conserv. Genet. 9(6), 2008
PMID: IND44121787
Estado actual y tendencia de lobos marinos de un pelo (Otaria flavescens) en el litoral norpatagonico
Crespo EA, Pedraza SN., 1991
Marine fronts at the continental shelves of austral South America
Acha EM, Mianzan HW, Guerrero RA, Favero M, Bava J., 2004
The influence of the Brazil and Malvinas currents on the southwestern Atlantic shelf circulation
Matano RP, Palma ED, Piola AR., 2010
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 27493782
PubMed | Europe PMC

Suchen in

Google Scholar