Evidence of positive selection associated with placental loss in tiger sharks
Swift DG, Dunning LT, Igea J, Brooks EJ, Jones CS, Noble LR, Ciezarek A, Humble E, Savolainen V (2016)
BMC EVOLUTIONARY BIOLOGY 16(1): 126.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Swift, Dominic G.;
Dunning, Luke T.;
Igea, Javier;
Brooks, Edward J.;
Jones, Catherine S.;
Noble, Leslie R.;
Ciezarek, Adam;
Humble, EmilyUniBi 
;
Savolainen, Vincent
;
Savolainen, VincentEinrichtung
Abstract / Bemerkung
Background: All vertebrates initially feed their offspring using yolk reserves. In some live-bearing species these yolk reserves may be supplemented with extra nutrition via a placenta. Sharks belonging to the Carcharhinidae family are all live-bearing, and with the exception of the tiger shark (Galeocerdo cuvier), develop placental connections after exhausting yolk reserves. Phylogenetic relationships suggest the lack of placenta in tiger sharks is due to secondary loss. This represents a dramatic shift in reproductive strategy, and is likely to have left a molecular footprint of positive selection within the genome. Results: We sequenced the transcriptome of the tiger shark and eight other live-bearing shark species. From this data we constructed a time-calibrated phylogenetic tree estimating the tiger shark lineage diverged from the placental carcharhinids approximately 94 million years ago. Along the tiger shark lineage, we identified five genes exhibiting a signature of positive selection. Four of these genes have functions likely associated with brain development (YWHAE and ARL6IP5) and sexual reproduction (VAMP4 and TCTEX1D2). Conclusions: Our results indicate the loss of placenta in tiger sharks may be associated with subsequent adaptive changes in brain development and sperm production.
Stichworte
Reproduction;
Viviparous;
Placenta;
Transcriptome;
RNA-Seq;
Positive;
selection;
Elasmobranchs;
Carcharhinids;
Galeocerdo
Erscheinungsjahr
2016
Zeitschriftentitel
BMC EVOLUTIONARY BIOLOGY
Band
16
Ausgabe
1
Art.-Nr.
126
Urheberrecht / Lizenzen
ISSN
1471-2148
Page URI
https://pub.uni-bielefeld.de/record/2904695
Zitieren
Swift DG, Dunning LT, Igea J, et al. Evidence of positive selection associated with placental loss in tiger sharks. BMC EVOLUTIONARY BIOLOGY. 2016;16(1): 126.
Swift, D. G., Dunning, L. T., Igea, J., Brooks, E. J., Jones, C. S., Noble, L. R., Ciezarek, A., et al. (2016). Evidence of positive selection associated with placental loss in tiger sharks. BMC EVOLUTIONARY BIOLOGY, 16(1), 126. doi:10.1186/s12862-016-0696-y
Swift, Dominic G., Dunning, Luke T., Igea, Javier, Brooks, Edward J., Jones, Catherine S., Noble, Leslie R., Ciezarek, Adam, Humble, Emily, and Savolainen, Vincent. 2016. “Evidence of positive selection associated with placental loss in tiger sharks”. BMC EVOLUTIONARY BIOLOGY 16 (1): 126.
Swift, D. G., Dunning, L. T., Igea, J., Brooks, E. J., Jones, C. S., Noble, L. R., Ciezarek, A., Humble, E., and Savolainen, V. (2016). Evidence of positive selection associated with placental loss in tiger sharks. BMC EVOLUTIONARY BIOLOGY 16:126.
Swift, D.G., et al., 2016. Evidence of positive selection associated with placental loss in tiger sharks. BMC EVOLUTIONARY BIOLOGY, 16(1): 126.
D.G. Swift, et al., “Evidence of positive selection associated with placental loss in tiger sharks”, BMC EVOLUTIONARY BIOLOGY, vol. 16, 2016, : 126.
Swift, D.G., Dunning, L.T., Igea, J., Brooks, E.J., Jones, C.S., Noble, L.R., Ciezarek, A., Humble, E., Savolainen, V.: Evidence of positive selection associated with placental loss in tiger sharks. BMC EVOLUTIONARY BIOLOGY. 16, : 126 (2016).
Swift, Dominic G., Dunning, Luke T., Igea, Javier, Brooks, Edward J., Jones, Catherine S., Noble, Leslie R., Ciezarek, Adam, Humble, Emily, and Savolainen, Vincent. “Evidence of positive selection associated with placental loss in tiger sharks”. BMC EVOLUTIONARY BIOLOGY 16.1 (2016): 126.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
3 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Bridging disciplines to advance elasmobranch conservation: applications of physiological ecology.
Lyons K, Bigman JS, Kacev D, Mull CG, Carlisle AB, Imhoff JL, Anderson JM, Weng KC, Galloway AS, Cave E, Gunn TR, Lowe CG, Brill RW, Bedore CN., Conserv Physiol 7(1), 2019
PMID: 31110763
Lyons K, Bigman JS, Kacev D, Mull CG, Carlisle AB, Imhoff JL, Anderson JM, Weng KC, Galloway AS, Cave E, Gunn TR, Lowe CG, Brill RW, Bedore CN., Conserv Physiol 7(1), 2019
PMID: 31110763
Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets.
Redmond AK, Macqueen DJ, Dooley H., BMC Evol Biol 18(1), 2018
PMID: 30442091
Redmond AK, Macqueen DJ, Dooley H., BMC Evol Biol 18(1), 2018
PMID: 30442091
Identification of Genes under Positive Selection Reveals Differences in Evolutionary Adaptation between Brown-Algal Species.
Teng L, Fan X, Xu D, Zhang X, Mock T, Ye N., Front Plant Sci 8(), 2017
PMID: 28861104
Teng L, Fan X, Xu D, Zhang X, Mock T, Ye N., Front Plant Sci 8(), 2017
PMID: 28861104
83 References
Daten bereitgestellt von Europe PubMed Central.
Convergent evolution of viviparity, matrotrophy, and specialisations for fetal nutrition in reptiles and other vertebrates
Blackburn DG., 1992
Blackburn DG., 1992
Reflections on the Evolution of Piscine Viviparity
Wourms JP, Lombardi J., 1992
Wourms JP, Lombardi J., 1992
Superfoetative viviparity in a Carboniferous chondrichthyan and reproduction in early gnathostomes
Grogan ED, Lund R., 2011
Grogan ED, Lund R., 2011
AUTHOR UNKNOWN, 0
Mossman HW., 1987
Reproductive mode and speciation: the viviparity-driven conflict hypothesis.
Zeh DW, Zeh JA., Bioessays 22(10), 2000
PMID: 10984720
Zeh DW, Zeh JA., Bioessays 22(10), 2000
PMID: 10984720
Parent-offspring conflict in the evolution of vertebrate reproductive mode.
Crespi B, Semeniuk C., Am. Nat. 163(5), 2004
PMID: 15122484
Crespi B, Semeniuk C., Am. Nat. 163(5), 2004
PMID: 15122484
Does viviparity evolve in cold climate reptiles because pregnant females maintain stable (not high) body temperatures?
Shine R., Evolution 58(8), 2004
PMID: 15446432
Shine R., Evolution 58(8), 2004
PMID: 15446432
Evolution of viviparity: a phylogenetic test of the cold-climate hypothesis in phrynosomatid lizards.
Lambert SM, Wiens JJ., Evolution 67(9), 2013
PMID: 24033171
Lambert SM, Wiens JJ., Evolution 67(9), 2013
PMID: 24033171
Intraspecific variation in clutch size and maternal investment in pueriparous and larviparous Salamandra salamandra females
Velo-Antón G, Santos X, Sanmartín-Villar I, Cordero-Rivera A, Buckley D., 2015
Velo-Antón G, Santos X, Sanmartín-Villar I, Cordero-Rivera A, Buckley D., 2015
Evolutionary transitions among egg-laying, live-bearing and maternal inputs in sharks and rays.
Dulvy NK, Reynolds JD., Proc. Biol. Sci. 264(1386), 1997
PMID: PMC1688595
Dulvy NK, Reynolds JD., Proc. Biol. Sci. 264(1386), 1997
PMID: PMC1688595
Reproductive Biology of Elasmobranchs
Conrath CL, Musick JA., 2012
Conrath CL, Musick JA., 2012
Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome.
Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S., PLoS Biol. 5(4), 2007
PMID: 17407382
Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S., PLoS Biol. 5(4), 2007
PMID: 17407382
The complex transcriptional landscape of the anucleate human platelet.
Bray PF, McKenzie SE, Edelstein LC, Nagalla S, Delgrosso K, Ertel A, Kupper J, Jing Y, Londin E, Loher P, Chen HW, Fortina P, Rigoutsos I., BMC Genomics 14(), 2013
PMID: 23323973
Bray PF, McKenzie SE, Edelstein LC, Nagalla S, Delgrosso K, Ertel A, Kupper J, Jing Y, Londin E, Loher P, Chen HW, Fortina P, Rigoutsos I., BMC Genomics 14(), 2013
PMID: 23323973
Elephant shark genome provides unique insights into gnathostome evolution.
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay BH, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC., Nature 505(7482), 2014
PMID: 24402279
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay BH, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC., Nature 505(7482), 2014
PMID: 24402279
The zebrafish reference genome sequence and its relationship to the human genome.
Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, Barrett JC, Koch R, Rauch GJ, White S, Chow W, Kilian B, Quintais LT, Guerra-Assuncao JA, Zhou Y, Gu Y, Yen J, Vogel JH, Eyre T, Redmond S, Banerjee R, Chi J, Fu B, Langley E, Maguire SF, Laird GK, Lloyd D, Kenyon E, Donaldson S, Sehra H, Almeida-King J, Loveland J, Trevanion S, Jones M, Quail M, Willey D, Hunt A, Burton J, Sims S, McLay K, Plumb B, Davis J, Clee C, Oliver K, Clark R, Riddle C, Elliot D, Eliott D, Threadgold G, Harden G, Ware D, Begum S, Mortimore B, Mortimer B, Kerry G, Heath P, Phillimore B, Tracey A, Corby N, Dunn M, Johnson C, Wood J, Clark S, Pelan S, Griffiths G, Smith M, Glithero R, Howden P, Barker N, Lloyd C, Stevens C, Harley J, Holt K, Panagiotidis G, Lovell J, Beasley H, Henderson C, Gordon D, Auger K, Wright D, Collins J, Raisen C, Dyer L, Leung K, Robertson L, Ambridge K, Leongamornlert D, McGuire S, Gilderthorp R, Griffiths C, Manthravadi D, Nichol S, Barker G, Whitehead S, Kay M, Brown J, Murnane C, Gray E, Humphries M, Sycamore N, Barker D, Saunders D, Wallis J, Babbage A, Hammond S, Mashreghi-Mohammadi M, Barr L, Martin S, Wray P, Ellington A, Matthews N, Ellwood M, Woodmansey R, Clark G, Cooper J, Cooper J, Tromans A, Grafham D, Skuce C, Pandian R, Andrews R, Harrison E, Kimberley A, Garnett J, Fosker N, Hall R, Garner P, Kelly D, Bird C, Palmer S, Gehring I, Berger A, Dooley CM, Ersan-Urun Z, Eser C, Geiger H, Geisler M, Karotki L, Kirn A, Konantz J, Konantz M, Oberlander M, Rudolph-Geiger S, Teucke M, Lanz C, Raddatz G, Osoegawa K, Zhu B, Rapp A, Widaa S, Langford C, Yang F, Schuster SC, Carter NP, Harrow J, Ning Z, Herrero J, Searle SM, Enright A, Geisler R, Plasterk RH, Lee C, Westerfield M, de Jong PJ, Zon LI, Postlethwait JH, Nusslein-Volhard C, Hubbard TJ, Roest Crollius H, Rogers J, Stemple DL., Nature 496(7446), 2013
PMID: 23594743
Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, Barrett JC, Koch R, Rauch GJ, White S, Chow W, Kilian B, Quintais LT, Guerra-Assuncao JA, Zhou Y, Gu Y, Yen J, Vogel JH, Eyre T, Redmond S, Banerjee R, Chi J, Fu B, Langley E, Maguire SF, Laird GK, Lloyd D, Kenyon E, Donaldson S, Sehra H, Almeida-King J, Loveland J, Trevanion S, Jones M, Quail M, Willey D, Hunt A, Burton J, Sims S, McLay K, Plumb B, Davis J, Clee C, Oliver K, Clark R, Riddle C, Elliot D, Eliott D, Threadgold G, Harden G, Ware D, Begum S, Mortimore B, Mortimer B, Kerry G, Heath P, Phillimore B, Tracey A, Corby N, Dunn M, Johnson C, Wood J, Clark S, Pelan S, Griffiths G, Smith M, Glithero R, Howden P, Barker N, Lloyd C, Stevens C, Harley J, Holt K, Panagiotidis G, Lovell J, Beasley H, Henderson C, Gordon D, Auger K, Wright D, Collins J, Raisen C, Dyer L, Leung K, Robertson L, Ambridge K, Leongamornlert D, McGuire S, Gilderthorp R, Griffiths C, Manthravadi D, Nichol S, Barker G, Whitehead S, Kay M, Brown J, Murnane C, Gray E, Humphries M, Sycamore N, Barker D, Saunders D, Wallis J, Babbage A, Hammond S, Mashreghi-Mohammadi M, Barr L, Martin S, Wray P, Ellington A, Matthews N, Ellwood M, Woodmansey R, Clark G, Cooper J, Cooper J, Tromans A, Grafham D, Skuce C, Pandian R, Andrews R, Harrison E, Kimberley A, Garnett J, Fosker N, Hall R, Garner P, Kelly D, Bird C, Palmer S, Gehring I, Berger A, Dooley CM, Ersan-Urun Z, Eser C, Geiger H, Geisler M, Karotki L, Kirn A, Konantz J, Konantz M, Oberlander M, Rudolph-Geiger S, Teucke M, Lanz C, Raddatz G, Osoegawa K, Zhu B, Rapp A, Widaa S, Langford C, Yang F, Schuster SC, Carter NP, Harrow J, Ning Z, Herrero J, Searle SM, Enright A, Geisler R, Plasterk RH, Lee C, Westerfield M, de Jong PJ, Zon LI, Postlethwait JH, Nusslein-Volhard C, Hubbard TJ, Roest Crollius H, Rogers J, Stemple DL., Nature 496(7446), 2013
PMID: 23594743
Uterine specializations in elasmobranchs
Hamlett W, Hysell M., 1998
Hamlett W, Hysell M., 1998
Does more maternal investment mean a larger brain? Evolutionary relationships between reproductive mode and brain size in chondrichthyans
Mull CG, Yopak KE, Dulvy NK., 2011
Mull CG, Yopak KE, Dulvy NK., 2011
Compagno L, Dando M, Fowler S., 2005
A novel mode of embryonic nutrition in the tiger shark, Galeocerdo cuvier
Castro JI, Sato K, Bodine AB., 2016
Castro JI, Sato K, Bodine AB., 2016
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A., Nat. Biotechnol. 29(7), 2011
PMID: 21572440
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A., Nat. Biotechnol. 29(7), 2011
PMID: 21572440
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
Stamatakis A., Bioinformatics 30(9), 2014
PMID: 24451623
Stamatakis A., Bioinformatics 30(9), 2014
PMID: 24451623
PAML 4: phylogenetic analysis by maximum likelihood.
Yang Z., Mol. Biol. Evol. 24(8), 2007
PMID: 17483113
Yang Z., Mol. Biol. Evol. 24(8), 2007
PMID: 17483113
Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
Yang Z, Wong WSW, Nielsen R., 2005
Yang Z, Wong WSW, Nielsen R., 2005
Beiträge zur Kenntniss der fossilen Fische aus der Molasse von Baltringen. Hayfische
Probst J., 1879
Probst J., 1879
Revisione degli “ittiodontoliti pliocenici” della collezione Lawley
Landini W., 1977
Landini W., 1977
Decouverte d’une faune originale d'elasmobranches dans les phosphates du Toarcien Lorrain (couche á Coeloceras crassum)
Delsate D, Lepage J., 1990
Delsate D, Lepage J., 1990
Les Orectolobiformes, Carchariniformes, et Myliobatiformes (Elasmobranchii, Neoselachii) des Bassins a phosphate du Maroc (Maastrichtian-Lutétien basal)
Noubhani A, Cappetta H., 1997
Noubhani A, Cappetta H., 1997
Shark and ray teeth from the Hauterivian (Lower Cretaceous) of north-east England
Underwood CJ, Mitchell SF, Veltkamp KJ., 1999
Underwood CJ, Mitchell SF, Veltkamp KJ., 1999
Neoselachian sharks and rays from the British Bathonian (Middle Jurassic)
Underwood CJ, Ward DJ., 2004
Underwood CJ, Ward DJ., 2004
AUTHOR UNKNOWN, 0
The effect of habitat on modern shark diversification.
Sorenson L, Santini F, Alfaro ME., J. Evol. Biol. 27(8), 2014
PMID: 24890604
Sorenson L, Santini F, Alfaro ME., J. Evol. Biol. 27(8), 2014
PMID: 24890604
Zangerl R., 1981
The Origin and Relationships of Early Chondricthyans
Grogan ED, Lund R, Greenfest-Allen E., 2012
Grogan ED, Lund R, Greenfest-Allen E., 2012
Prey Capture Behavior and Feeding Mechanics of Elasmobranchs
Motta PJ, Huber DR., 2012
Motta PJ, Huber DR., 2012
Reproductive biology of the tiger shark (Galeocerdo cuvier) in Hawaii
Whitney NM, Crow GL., 2007
Whitney NM, Crow GL., 2007
Tctex2-related outer arm dynein light chain is phosphorylated at activation of sperm motility.
Inaba K, Kagami O, Ogawa K., Biochem. Biophys. Res. Commun. 256(1), 1999
PMID: 10066443
Inaba K, Kagami O, Ogawa K., Biochem. Biophys. Res. Commun. 256(1), 1999
PMID: 10066443
LC2, the chlamydomonas homologue of the t complex-encoded protein Tctex2, is essential for outer dynein arm assembly.
Pazour GJ, Koutoulis A, Benashski SE, Dickert BL, Sheng H, Patel-King RS, King SM, Witman GB., Mol. Biol. Cell 10(10), 1999
PMID: 10512883
Pazour GJ, Koutoulis A, Benashski SE, Dickert BL, Sheng H, Patel-King RS, King SM, Witman GB., Mol. Biol. Cell 10(10), 1999
PMID: 10512883
Subunit composition of the human cytoplasmic dynein-2 complex.
Asante D, Stevenson NL, Stephens DJ., J. Cell. Sci. 127(Pt 21), 2014
PMID: 25205765
Asante D, Stevenson NL, Stephens DJ., J. Cell. Sci. 127(Pt 21), 2014
PMID: 25205765
Disruption of the murine dynein light chain gene Tcte3-3 results in asthenozoospermia.
Rashid S, Grzmil P, Drenckhahn JD, Meinhardt A, Adham I, Engel W, Neesen J., Reproduction 139(1), 2010
PMID: 19778998
Rashid S, Grzmil P, Drenckhahn JD, Meinhardt A, Adham I, Engel W, Neesen J., Reproduction 139(1), 2010
PMID: 19778998
Proteomic analysis of proteins involved in spermiogenesis in mouse.
Guo X, Shen J, Xia Z, Zhang R, Zhang P, Zhao C, Xing J, Chen L, Chen W, Lin M, Huo R, Su B, Zhou Z, Sha J., J. Proteome Res. 9(3), 2010
PMID: 20099899
Guo X, Shen J, Xia Z, Zhang R, Zhang P, Zhao C, Xing J, Chen L, Chen W, Lin M, Huo R, Su B, Zhou Z, Sha J., J. Proteome Res. 9(3), 2010
PMID: 20099899
Sperm competition and its evolutionary consequences in the insects
Parker GA., 1970
Parker GA., 1970
Comparative morphology of the sperm in chondrichthyan fishes
Tanaka S, Kurokawa H, Hara M., 1995
Tanaka S, Kurokawa H, Hara M., 1995
Sperm viability and sperm competition in insects.
Hunter FM, Birkhead TR., Curr. Biol. 12(2), 2002
PMID: 11818062
Hunter FM, Birkhead TR., Curr. Biol. 12(2), 2002
PMID: 11818062
Polyandry reduces sperm length variation in social insects.
Fitzpatrick JL, Baer B., Evolution 65(10), 2011
PMID: 21967440
Fitzpatrick JL, Baer B., Evolution 65(10), 2011
PMID: 21967440
EAAC1 gene deletion increases neuronal death and blood brain barrier disruption after transient cerebral ischemia in female mice.
Choi BY, Kim JH, Kim HJ, Lee BE, Kim IY, Sohn M, Suh SW., Int J Mol Sci 15(11), 2014
PMID: 25350110
Choi BY, Kim JH, Kim HJ, Lee BE, Kim IY, Sohn M, Suh SW., Int J Mol Sci 15(11), 2014
PMID: 25350110
Pharmacological interference with glutamate re-uptake impairs long-term memory in the honeybee, apis mellifera.
Maleszka R, Helliwell P, Kucharski R., Behav. Brain Res. 115(1), 2000
PMID: 10996407
Maleszka R, Helliwell P, Kucharski R., Behav. Brain Res. 115(1), 2000
PMID: 10996407
Requirement of appropriate glutamate concentrations in the synaptic cleft for hippocampal LTP induction.
Katagiri H, Tanaka K, Manabe T., Eur. J. Neurosci. 14(3), 2001
PMID: 11553304
Katagiri H, Tanaka K, Manabe T., Eur. J. Neurosci. 14(3), 2001
PMID: 11553304
The role of glutamate transporters in glutamate homeostasis in the brain.
Takahashi M, Billups B, Rossi D, Sarantis M, Hamann M, Attwell D., J. Exp. Biol. 200(Pt 2), 1997
PMID: 9050249
Takahashi M, Billups B, Rossi D, Sarantis M, Hamann M, Attwell D., J. Exp. Biol. 200(Pt 2), 1997
PMID: 9050249
Scalloped hammerhead shark Sphyrna lewini, utilizes deep-water, hypoxic zone in the Gulf of California.
Jorgensen SJ, Klimley AP, Muhlia-Melo AF., J. Fish Biol. 74(7), 2009
PMID: 20735666
Jorgensen SJ, Klimley AP, Muhlia-Melo AF., J. Fish Biol. 74(7), 2009
PMID: 20735666
Distribution and diet of four species of carcharhinid shark in the Hawaiian Islands: Evidence for resource partitioning and competitive exclusion
Papastamatiou YP, Wetherbee BM, Lowe CG, Crow GL., 2006
Papastamatiou YP, Wetherbee BM, Lowe CG, Crow GL., 2006
Vertical movement patterns and ontogenetic niche expansion in the tiger shark, Galeocerdo cuvier.
Afonso AS, Hazin FH., PLoS ONE 10(1), 2015
PMID: 25629732
Afonso AS, Hazin FH., PLoS ONE 10(1), 2015
PMID: 25629732
Habitat use and foraging behavior of tiger sharks (Galeocerdo cuvier) in a seagrass ecosystem
Heithaus MR, Dill LM, Marshall GJ, Buhleier B., 2002
Heithaus MR, Dill LM, Marshall GJ, Buhleier B., 2002
Ecosystem metabolism in a subtropical, seagrass-dominated lagoon
Ziegler S, Benner R., 1998
Ziegler S, Benner R., 1998
Placental invasiveness and brain-body allometry in eutherian mammals.
Elliot MG, Crespi BJ., J. Evol. Biol. 21(6), 2008
PMID: 18808441
Elliot MG, Crespi BJ., J. Evol. Biol. 21(6), 2008
PMID: 18808441
Implications of hypoxia for the brain size and gill morphometry of mormyrid fishes
Chapman LJ, Hulen KG., 2001
Chapman LJ, Hulen KG., 2001
Phenotypic plasticity and the possible role of genetic assimilation: Hypoxia-induced trade-offs in the morphological traits of an African cichlid
Chapman LJ, Galis F, Shinn J., 2000
Chapman LJ, Galis F, Shinn J., 2000
Developmental Plasticity, Genetic Differentiation, and Hypoxia-induced Trade-offs in an African Cichlid Fish
Chapman L, Albert J, Galis F., 2008
Chapman L, Albert J, Galis F., 2008
14-3-3epsilon is important for neuronal migration by binding to NUDEL: a molecular explanation for Miller-Dieker syndrome.
Toyo-oka K, Shionoya A, Gambello MJ, Cardoso C, Leventer R, Ward HL, Ayala R, Tsai LH, Dobyns W, Ledbetter D, Hirotsune S, Wynshaw-Boris A., Nat. Genet. 34(3), 2003
PMID: 12796778
Toyo-oka K, Shionoya A, Gambello MJ, Cardoso C, Leventer R, Ward HL, Ayala R, Tsai LH, Dobyns W, Ledbetter D, Hirotsune S, Wynshaw-Boris A., Nat. Genet. 34(3), 2003
PMID: 12796778
14-3-3 proteins: active cofactors in cellular regulation by serine/threonine phosphorylation.
Tzivion G, Avruch J., J. Biol. Chem. 277(5), 2001
PMID: 11709560
Tzivion G, Avruch J., J. Biol. Chem. 277(5), 2001
PMID: 11709560
14-3-3 epsilon positively regulates Ras-mediated signaling in Drosophila.
Chang HC, Rubin GM., Genes Dev. 11(9), 1997
PMID: 9159394
Chang HC, Rubin GM., Genes Dev. 11(9), 1997
PMID: 9159394
Reich DE, Goldstein DB., 1999
Ancient and continuing Darwinian selection on insulin-like growth factor II in placental fishes.
O'Neill MJ, Lawton BR, Mateos M, Carone DM, Ferreri GC, Hrbek T, Meredith RW, Reznick DN, O'Neill RJ., Proc. Natl. Acad. Sci. U.S.A. 104(30), 2007
PMID: 17636118
O'Neill MJ, Lawton BR, Mateos M, Carone DM, Ferreri GC, Hrbek T, Meredith RW, Reznick DN, O'Neill RJ., Proc. Natl. Acad. Sci. U.S.A. 104(30), 2007
PMID: 17636118
Neutral theory: the null hypothesis of molecular evolution
Duret L., 2008
Duret L., 2008
Patterns of positive selection in six Mammalian genomes.
Kosiol C, Vinar T, da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, Siepel A., PLoS Genet. 4(8), 2008
PMID: 18670650
Kosiol C, Vinar T, da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, Siepel A., PLoS Genet. 4(8), 2008
PMID: 18670650
Placental invasion, preeclampsia risk and adaptive molecular evolution at the origin of the great apes: evidence from genome-wide analyses.
Crosley EJ, Elliot MG, Christians JK, Crespi BJ., Placenta 34(2), 2012
PMID: 23266291
Crosley EJ, Elliot MG, Christians JK, Crespi BJ., Placenta 34(2), 2012
PMID: 23266291
Genetic recapitulation of human pre-eclampsia risk during convergent evolution of reduced placental invasiveness in eutherian mammals.
Elliot MG, Crespi BJ., Philos. Trans. R. Soc. Lond., B, Biol. Sci. 370(1663), 2015
PMID: 25602073
Elliot MG, Crespi BJ., Philos. Trans. R. Soc. Lond., B, Biol. Sci. 370(1663), 2015
PMID: 25602073
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
Search and clustering orders of magnitude faster than BLAST.
Edgar RC., Bioinformatics 26(19), 2010
PMID: 20709691
Edgar RC., Bioinformatics 26(19), 2010
PMID: 20709691
Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
M-Coffee: combining multiple sequence alignment methods with T-Coffee.
Wallace IM, O'Sullivan O, Higgins DG, Notredame C., Nucleic Acids Res. 34(6), 2006
PMID: 16556910
Wallace IM, O'Sullivan O, Higgins DG, Notredame C., Nucleic Acids Res. 34(6), 2006
PMID: 16556910
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
Castresana J., Mol. Biol. Evol. 17(4), 2000
PMID: 10742046
Castresana J., Mol. Biol. Evol. 17(4), 2000
PMID: 10742046
A new look at the statistical model identification
Akaike H., 1974
Akaike H., 1974
jModelTest 2: more models, new heuristics and parallel computing.
Darriba D, Taboada GL, Doallo R, Posada D., Nat. Methods 9(8), 2012
PMID: 22847109
Darriba D, Taboada GL, Doallo R, Posada D., Nat. Methods 9(8), 2012
PMID: 22847109
Statistical properties of the branch-site test of positive selection.
Yang Z, dos Reis M., Mol. Biol. Evol. 28(3), 2010
PMID: 21087944
Yang Z, dos Reis M., Mol. Biol. Evol. 28(3), 2010
PMID: 21087944
Detecting signatures of positive selection in partial sequences generated on a large scale: pitfalls, procedures and resources.
Brieuc MS, Naish KA., Mol Ecol Resour 11 Suppl 1(), 2011
PMID: 21429173
Brieuc MS, Naish KA., Mol Ecol Resour 11 Suppl 1(), 2011
PMID: 21429173
Evidence of positive selection at codon sites localized in extracellular domains of mammalian CC motif chemokine receptor proteins.
Metzger KJ, Thomas MA., BMC Evol. Biol. 10(), 2010
PMID: 20459756
Metzger KJ, Thomas MA., BMC Evol. Biol. 10(), 2010
PMID: 20459756
Controlling the false discovery rate: a practical and powerful approach to multiple testing
Benjamini Y, Hochberg Y., 1995
Benjamini Y, Hochberg Y., 1995
Patterns of positive selection in seven ant genomes.
Roux J, Privman E, Moretti S, Daub JT, Robinson-Rechavi M, Keller L., Mol. Biol. Evol. 31(7), 2014
PMID: 24782441
Roux J, Privman E, Moretti S, Daub JT, Robinson-Rechavi M, Keller L., Mol. Biol. Evol. 31(7), 2014
PMID: 24782441
More genes underwent positive selection in chimpanzee evolution than in human evolution.
Bakewell MA, Shi P, Zhang J., Proc. Natl. Acad. Sci. U.S.A. 104(18), 2007
PMID: 17449636
Bakewell MA, Shi P, Zhang J., Proc. Natl. Acad. Sci. U.S.A. 104(18), 2007
PMID: 17449636
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 27296413
PubMed | Europe PMC
Suchen in
Google Scholar