Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes
Simpson CG, Fuller J, Calixto CPG, McNicol J, Booth C, Brown JWS, Staiger D (2016)
In: Environmental Responses in Plants. Methods and Protocols. Duque P (Ed); Methods in Molecular Biology, 1398. New York, NY: Springer Science + Business Media: 119-132.
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| Veröffentlicht | Englisch
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Autor*in
Simpson, Craig G.;
Fuller, John;
Calixto, Cristiane P. G.;
McNicol, Jim;
Booth, Clare;
Brown, John W. S.;
Staiger, DorotheeUniBi
Herausgeber*in
Duque, Paula
Abstract / Bemerkung
Posttranscriptional control makes an important contribution to circadian regulation of gene expression. In higher plants, alternative splicing is particularly prevalent upon abiotic and biotic stress and in the circadian system. Here we describe in detail a high-resolution reverse transcription-PCR based panel (HR RT-PCR) to monitor alternative splicing events. The use of the panel allows the quantification of changes in the proportion of splice isoforms between different samples, e.g., different time points, different tissues, genotypes, ecotypes, or treatments.
Stichworte
Alternative splicing;
Circadian rhythm;
RNA-binding proteins;
Splicing factors
Erscheinungsjahr
2016
Buchtitel
Environmental Responses in Plants. Methods and Protocols
Serientitel
Methods in Molecular Biology
Band
1398
Seite(n)
119-132
ISBN
978-1-4939-3354-9
eISBN
978-1-4939-3356-3
ISSN
1064-3745
eISSN
1940-6029
Page URI
https://pub.uni-bielefeld.de/record/2901832
Zitieren
Simpson CG, Fuller J, Calixto CPG, et al. Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes. In: Duque P, ed. Environmental Responses in Plants. Methods and Protocols. Methods in Molecular Biology. Vol 1398. New York, NY: Springer Science + Business Media; 2016: 119-132.
Simpson, C. G., Fuller, J., Calixto, C. P. G., McNicol, J., Booth, C., Brown, J. W. S., & Staiger, D. (2016). Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes. In P. Duque (Ed.), Methods in Molecular Biology: Vol. 1398. Environmental Responses in Plants. Methods and Protocols (pp. 119-132). New York, NY: Springer Science + Business Media. doi:10.1007/978-1-4939-3356-3_11
Simpson, Craig G., Fuller, John, Calixto, Cristiane P. G., McNicol, Jim, Booth, Clare, Brown, John W. S., and Staiger, Dorothee. 2016. “Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes”. In Environmental Responses in Plants. Methods and Protocols, ed. Paula Duque, 1398:119-132. Methods in Molecular Biology. New York, NY: Springer Science + Business Media.
Simpson, C. G., Fuller, J., Calixto, C. P. G., McNicol, J., Booth, C., Brown, J. W. S., and Staiger, D. (2016). “Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes” in Environmental Responses in Plants. Methods and Protocols, Duque, P. ed. Methods in Molecular Biology, vol. 1398, (New York, NY: Springer Science + Business Media), 119-132.
Simpson, C.G., et al., 2016. Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes. In P. Duque, ed. Environmental Responses in Plants. Methods and Protocols. Methods in Molecular Biology. no.1398 New York, NY: Springer Science + Business Media, pp. 119-132.
C.G. Simpson, et al., “Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes”, Environmental Responses in Plants. Methods and Protocols, P. Duque, ed., Methods in Molecular Biology, vol. 1398, New York, NY: Springer Science + Business Media, 2016, pp.119-132.
Simpson, C.G., Fuller, J., Calixto, C.P.G., McNicol, J., Booth, C., Brown, J.W.S., Staiger, D.: Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes. In: Duque, P. (ed.) Environmental Responses in Plants. Methods and Protocols. Methods in Molecular Biology. 1398, p. 119-132. Springer Science + Business Media, New York, NY (2016).
Simpson, Craig G., Fuller, John, Calixto, Cristiane P. G., McNicol, Jim, Booth, Clare, Brown, John W. S., and Staiger, Dorothee. “Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes”. Environmental Responses in Plants. Methods and Protocols. Ed. Paula Duque. New York, NY: Springer Science + Business Media, 2016.Vol. 1398. Methods in Molecular Biology. 119-132.
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