Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane

Krukenberg V, Harding K, Richter M, Glöckner FO, Gruber-Vodicka H, Adam B, Berg JS, Knittel K, Tegetmeyer H, Boetius A, Wegener G (2016)
Environmental Microbiology 18(9: SI): 3073-3091.

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Autor*in
Krukenberg, Viola; Harding, Katie; Richter, Michael; Glöckner, Frank Oliver; Gruber-Vodicka, Harald; Adam, Birgit; Berg, Jasmine S.; Knittel, Katrin; Tegetmeyer, HalinaUniBi ; Boetius, Antje; Wegener, Gunter
Abstract / Bemerkung
The anaerobic oxidation of methane (AOM) is mediated by consortia of anaerobic methane-oxidizing archaea (ANME) and their specific partner bacteria. In thermophilic AOM consortia enriched from Guaymas Basin, members of the ANME-1 clade are associated with bacteria of the HotSeep-1 cluster, which likely perform direct electron exchange via nanowires. The partner bacterium was enriched with hydrogen as sole electron donor and sulfate as electron acceptor. Based on phylogenetic, genomic and metabolic characteristics we propose to name this chemolithoautotrophic sulfate reducer Candidatus Desulfofervidus auxilii. Ca. D. auxilii grows on hydrogen at temperatures between 50°C and 70°C with an activity optimum at 60°C and doubling time of 4-6 days. Its genome draft encodes for canonical sulfate reduction, periplasmic and soluble hydrogenases and autotrophic carbon fixation via the reductive tricarboxylic acid cycle. The presence of genes for pili formation and cytochromes, and their similarity to genes of Geobacter spp., indicate a potential for syntrophic growth via direct interspecies electron transfer when the organism grows in consortia with ANME. This first ANME-free enrichment of an AOM partner bacterium and its characterization opens the perspective for a deeper understanding of syntrophy in anaerobic methane oxidation.
Erscheinungsjahr
2016
Zeitschriftentitel
Environmental Microbiology
Band
18
Ausgabe
9: SI
Seite(n)
3073 - 3091
ISSN
1462-2912
Page URI
https://pub.uni-bielefeld.de/record/2901617

Zitieren

Krukenberg V, Harding K, Richter M, et al. Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane. Environmental Microbiology. 2016;18(9: SI):3073-3091.
Krukenberg, V., Harding, K., Richter, M., Glöckner, F. O., Gruber-Vodicka, H., Adam, B., Berg, J. S., et al. (2016). Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane. Environmental Microbiology, 18(9: SI), 3073-3091. doi:10.1111/1462-2920.13283
Krukenberg, Viola, Harding, Katie, Richter, Michael, Glöckner, Frank Oliver, Gruber-Vodicka, Harald, Adam, Birgit, Berg, Jasmine S., et al. 2016. “Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane”. Environmental Microbiology 18 (9: SI): 3073-3091.
Krukenberg, V., Harding, K., Richter, M., Glöckner, F. O., Gruber-Vodicka, H., Adam, B., Berg, J. S., Knittel, K., Tegetmeyer, H., Boetius, A., et al. (2016). Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane. Environmental Microbiology 18, 3073-3091.
Krukenberg, V., et al., 2016. Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane. Environmental Microbiology, 18(9: SI), p 3073-3091.
V. Krukenberg, et al., “Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane”, Environmental Microbiology, vol. 18, 2016, pp. 3073-3091.
Krukenberg, V., Harding, K., Richter, M., Glöckner, F.O., Gruber-Vodicka, H., Adam, B., Berg, J.S., Knittel, K., Tegetmeyer, H., Boetius, A., Wegener, G.: Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane. Environmental Microbiology. 18, 3073-3091 (2016).
Krukenberg, Viola, Harding, Katie, Richter, Michael, Glöckner, Frank Oliver, Gruber-Vodicka, Harald, Adam, Birgit, Berg, Jasmine S., Knittel, Katrin, Tegetmeyer, Halina, Boetius, Antje, and Wegener, Gunter. “Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane”. Environmental Microbiology 18.9: SI (2016): 3073-3091.

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Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.
Yarza P, Yilmaz P, Pruesse E, Glockner FO, Ludwig W, Schleifer KH, Whitman WB, Euzeby J, Amann R, Rossello-Mora R., Nat. Rev. Microbiol. 12(9), 2014
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
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PMID: 21552244
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.
Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FS., Bioinformatics 26(13), 2010
PMID: 20472543
A greedy algorithm for aligning DNA sequences.
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PMID: 10890397
DNA recovery from soils of diverse composition.
Zhou J, Bruns MA, Tiedje JM., Appl. Environ. Microbiol. 62(2), 1996
PMID: 8593035
Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited.
Zverlov V, Klein M, Lucker S, Friedrich MW, Kellermann J, Stahl DA, Loy A, Wagner M., J. Bacteriol. 187(6), 2005
PMID: 15743970
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