Corynebacterium glutamicum metabolic engineering with CRISPR interference (CRISPRi)

Cleto S, Vold Korgaard Jensen J, Wendisch VF, Lu TK (2016)
ACS Synth Biol 5: 375-385.

Zeitschriftenaufsatz | Veröffentlicht| Englisch
 
Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Autor/in
Erscheinungsjahr
2016
Zeitschriftentitel
ACS Synth Biol
Band
5
Seite(n)
375-385
Page URI
https://pub.uni-bielefeld.de/record/2900785

Zitieren

Cleto S, Vold Korgaard Jensen J, Wendisch VF, Lu TK. Corynebacterium glutamicum metabolic engineering with CRISPR interference (CRISPRi). ACS Synth Biol. 2016;5:375-385.
Cleto, S., Vold Korgaard Jensen, J., Wendisch, V. F., & Lu, T. K. (2016). Corynebacterium glutamicum metabolic engineering with CRISPR interference (CRISPRi). ACS Synth Biol, 5, 375-385. doi:10.1021/acssynbio.5b00216
Cleto, S., Vold Korgaard Jensen, J., Wendisch, V. F., and Lu, T. K. (2016). Corynebacterium glutamicum metabolic engineering with CRISPR interference (CRISPRi). ACS Synth Biol 5, 375-385.
Cleto, S., et al., 2016. Corynebacterium glutamicum metabolic engineering with CRISPR interference (CRISPRi). ACS Synth Biol, 5, p 375-385.
S. Cleto, et al., “Corynebacterium glutamicum metabolic engineering with CRISPR interference (CRISPRi)”, ACS Synth Biol, vol. 5, 2016, pp. 375-385.
Cleto, S., Vold Korgaard Jensen, J., Wendisch, V.F., Lu, T.K.: Corynebacterium glutamicum metabolic engineering with CRISPR interference (CRISPRi). ACS Synth Biol. 5, 375-385 (2016).
Cleto, Sara, Vold Korgaard Jensen, Jaide, Wendisch, Volker F., and Lu, Timothy K. “Corynebacterium glutamicum metabolic engineering with CRISPR interference (CRISPRi)”. ACS Synth Biol 5 (2016): 375-385.

53 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Multiplex genome editing of microorganisms using CRISPR-Cas.
Adiego-Pérez B, Randazzo P, Daran JM, Verwaal R, Roubos JA, Daran-Lapujade P, van der Oost J., FEMS Microbiol Lett 366(8), 2019
PMID: 31087001
Advances in Industrial Biotechnology Using CRISPR-Cas Systems.
Donohoue PD, Barrangou R, May AP., Trends Biotechnol 36(2), 2018
PMID: 28778606
Metabolic evolution and a comparative omics analysis of Corynebacterium glutamicum for putrescine production.
Li Z, Shen YP, Jiang XL, Feng LS, Liu JZ., J Ind Microbiol Biotechnol 45(2), 2018
PMID: 29344811
Advancing biotechnology with CRISPR/Cas9: recent applications and patent landscape.
Ferreira R, David F, Nielsen J., J Ind Microbiol Biotechnol 45(7), 2018
PMID: 29362972
Microbioreactor Systems for Accelerated Bioprocess Development.
Hemmerich J, Noack S, Wiechert W, Oldiges M., Biotechnol J 13(4), 2018
PMID: 29283217
Metabolic engineering of Corynebacterium glutamicum for fermentative production of chemicals in biorefinery.
Baritugo KA, Kim HT, David Y, Choi JI, Hong SH, Jeong KJ, Choi JH, Joo JC, Park SJ., Appl Microbiol Biotechnol 102(9), 2018
PMID: 29557518
Production of L-valine from metabolically engineered Corynebacterium glutamicum.
Wang X, Zhang H, Quinn PJ., Appl Microbiol Biotechnol 102(10), 2018
PMID: 29594358
Applications of CRISPR/Cas System to Bacterial Metabolic Engineering.
Cho S, Shin J, Cho BK., Int J Mol Sci 19(4), 2018
PMID: 29621180
Prospects for engineering dynamic CRISPR-Cas transcriptional circuits to improve bioproduction.
Fontana J, Voje WE, Zalatan JG, Carothers JM., J Ind Microbiol Biotechnol 45(7), 2018
PMID: 29740742
Regulated Expression of sgRNAs Tunes CRISPRi in E. coli.
Fontana J, Dong C, Ham JY, Zalatan JG, Carothers JM., Biotechnol J 13(9), 2018
PMID: 29635744
Building a genome engineering toolbox in nonmodel prokaryotic microbes.
Freed E, Fenster J, Smolinski SL, Walker J, Henard CA, Gill R, Eckert CA., Biotechnol Bioeng 115(9), 2018
PMID: 29750332
The limits to biocatalysis: pushing the envelope.
Sheldon RA, Brady D., Chem Commun (Camb) 54(48), 2018
PMID: 29770379
Targeted Nucleotide Editing Technologies for Microbial Metabolic Engineering.
Arazoe T, Kondo A, Nishida K., Biotechnol J 13(9), 2018
PMID: 29862665
Synthetic CRISPR-Cas gene activators for transcriptional reprogramming in bacteria.
Dong C, Fontana J, Patel A, Carothers JM, Zalatan JG., Nat Commun 9(1), 2018
PMID: 29950558
CRISPR/dCas9-Mediated Multiplex Gene Repression in Streptomyces.
Zhao Y, Li L, Zheng G, Jiang W, Deng Z, Wang Z, Lu Y., Biotechnol J 13(9), 2018
PMID: 29862648
CRISPR-Enabled Tools for Engineering Microbial Genomes and Phenotypes.
Tarasava K, Oh EJ, Eckert CA, Gill RT., Biotechnol J 13(9), 2018
PMID: 29917318
Transport and metabolic engineering of the cell factory Corynebacterium glutamicum.
Pérez-García F, Wendisch VF., FEMS Microbiol Lett 365(16), 2018
PMID: 29982619
Exploring of the feature space of de novo developed post-transcriptional riboregulators.
Peters G, Maertens J, Lammertyn J, De Mey M., PLoS Comput Biol 14(8), 2018
PMID: 30118473
CRISPR-Cpf1-Assisted Multiplex Genome Editing and Transcriptional Repression in Streptomyces.
Li L, Wei K, Zheng G, Liu X, Chen S, Jiang W, Lu Y., Appl Environ Microbiol 84(18), 2018
PMID: 29980561
CRISPR-Cas9/Cas12a biotechnology and application in bacteria.
Yao R, Liu D, Jia X, Zheng Y, Liu W, Xiao Y., Synth Syst Biotechnol 3(3), 2018
PMID: 30345399
Metabolic engineering of Corynebacterium glutamicum for anthocyanin production.
Zha J, Zang Y, Mattozzi M, Plassmeier J, Gupta M, Wu X, Clarkson S, Koffas MAG., Microb Cell Fact 17(1), 2018
PMID: 30217197
Synthetic biology approaches to access renewable carbon source utilization in Corynebacterium glutamicum.
Zhao N, Qian L, Luo G, Zheng S., Appl Microbiol Biotechnol 102(22), 2018
PMID: 30218378
Encryption and steganography of synthetic gene circuits.
Purcell O, Wang J, Siuti P, Lu TK., Nat Commun 9(1), 2018
PMID: 30467337
Enhanced solvent production by metabolic engineering of a twin-clostridial consortium.
Wen Z, Minton NP, Zhang Y, Li Q, Liu J, Jiang Y, Yang S., Metab Eng 39(), 2017
PMID: 27794465
Exploring the potential of genome editing CRISPR-Cas9 technology.
Singh V, Braddick D, Dhar PK., Gene 599(), 2017
PMID: 27836667
CRISPR-Cas9: a promising tool for gene editing on induced pluripotent stem cells.
Kim EJ, Kang KH, Ju JH., Korean J Intern Med 32(1), 2017
PMID: 28049282
Fermentative production of L-pipecolic acid from glucose and alternative carbon sources.
Pérez-García F, Max Risse J, Friehs K, Wendisch VF., Biotechnol J 12(7), 2017
PMID: 28169491
CRISPR-Cpf1 assisted genome editing of Corynebacterium glutamicum.
Jiang Y, Qian F, Yang J, Liu Y, Dong F, Xu C, Sun B, Chen B, Xu X, Li Y, Wang R, Yang S., Nat Commun 8(), 2017
PMID: 28469274
Production of amino acids - Genetic and metabolic engineering approaches.
Lee JH, Wendisch VF., Bioresour Technol 245(pt b), 2017
PMID: 28552565
CRISPR Editing in Biological and Biomedical Investigation.
Zhang H, McCarty N., J Cell Biochem 118(12), 2017
PMID: 28467679
CRISPR/Cas9-coupled recombineering for metabolic engineering of Corynebacterium glutamicum.
Cho JS, Choi KR, Prabowo CPS, Shin JH, Yang D, Jang J, Lee SY., Metab Eng 42(), 2017
PMID: 28649005
Recombineering using RecET in Corynebacterium glutamicum ATCC14067 via a self-excisable cassette.
Huang Y, Li L, Xie S, Zhao N, Han S, Lin Y, Zheng S., Sci Rep 7(1), 2017
PMID: 28801604
Increasing on-target cleavage efficiency for CRISPR/Cas9-induced large fragment deletion in Myxococcus xanthus.
Yang YJ, Wang Y, Li ZF, Gong Y, Zhang P, Hu WC, Sheng DH, Li YZ., Microb Cell Fact 16(1), 2017
PMID: 28814300
Engineering Microbial Metabolite Dynamics and Heterogeneity.
Schmitz AC, Hartline CJ, Zhang F., Biotechnol J 12(10), 2017
PMID: 28901715
Molecular tools for gene manipulation in filamentous fungi.
Wang S, Chen H, Tang X, Zhang H, Chen W, Chen YQ., Appl Microbiol Biotechnol 101(22), 2017
PMID: 28965220
Insight of Genus Corynebacterium: Ascertaining the Role of Pathogenic and Non-pathogenic Species.
Oliveira A, Oliveira LC, Aburjaile F, Benevides L, Tiwari S, Jamal SB, Silva A, Figueiredo HCP, Ghosh P, Portela RW, De Carvalho Azevedo VA, Wattam AR., Front Microbiol 8(), 2017
PMID: 29075239
Efficient gene editing in Corynebacterium glutamicum using the CRISPR/Cas9 system.
Peng F, Wang X, Sun Y, Dong G, Yang Y, Liu X, Bai Z., Microb Cell Fact 16(1), 2017
PMID: 29137643
Development of a CRISPR/Cas9 genome editing toolbox for Corynebacterium glutamicum.
Liu J, Wang Y, Lu Y, Zheng P, Sun J, Ma Y., Microb Cell Fact 16(1), 2017
PMID: 29145843
Foundations and Emerging Paradigms for Computing in Living Cells.
Ma KC, Perli SD, Lu TK., J Mol Biol 428(5 pt b), 2016
PMID: 26908220
Towards synthesis of monoterpenes and derivatives using synthetic biology.
Zebec Z, Wilkes J, Jervis AJ, Scrutton NS, Takano E, Breitling R., Curr Opin Chem Biol 34(), 2016
PMID: 27315341
Transcriptional regulation with CRISPR-Cas9: principles, advances, and applications.
Didovyk A, Borek B, Tsimring L, Hasty J., Curr Opin Biotechnol 40(), 2016
PMID: 27344519
Development of a CRISPR-Cas9 Tool Kit for Comprehensive Engineering of Bacillus subtilis.
Westbrook AW, Moo-Young M, Chou CP., Appl Environ Microbiol 82(16), 2016
PMID: 27260361
Engineering of temperature- and light-switchable Cas9 variants.
Richter F, Fonfara I, Bouazza B, Schumacher CH, Bratovič M, Charpentier E, Möglich A., Nucleic Acids Res 44(20), 2016
PMID: 27744350
CRISPR interference (CRISPRi) for gene regulation and succinate production in cyanobacterium S. elongatus PCC 7942.
Huang CH, Shen CR, Li H, Sung LY, Wu MY, Hu YC., Microb Cell Fact 15(1), 2016
PMID: 27846887

70 References

Daten bereitgestellt von Europe PubMed Central.


AUTHOR UNKNOWN, 1979

AUTHOR UNKNOWN, 2010

AUTHOR UNKNOWN, 2012
Production and utilization of amino acids.
Izumi Y, Chibata I, Itoh T., Angew. Chem. Int. Ed. Engl. 17(3), 1978
PMID: 417646
Industrial Applicationsof Amino Acids
AUTHOR UNKNOWN, 1978

AUTHOR UNKNOWN, 2013

AUTHOR UNKNOWN, 2015
Efficient markerless gene replacement in Corynebacterium glutamicum using a new temperature-sensitive plasmid.
Okibe N, Suzuki N, Inui M, Yukawa H., J. Microbiol. Methods 85(2), 2011
PMID: 21362445

AUTHOR UNKNOWN, 2012
Production of Fatty Acid-derived valuable chemicals in synthetic microbes.
Yu AQ, Pratomo Juwono NK, Leong SS, Chang MW., Front Bioeng Biotechnol 2(), 2014
PMID: 25566540
The Corynebacterium glutamicum genome: features and impacts on biotechnological processes.
Ikeda M, Nakagawa S., Appl. Microbiol. Biotechnol. 62(2-3), 2003
PMID: 12743753
Manipulating corynebacteria, from individual genes to chromosomes.
Vertes AA, Inui M, Yukawa H., Appl. Environ. Microbiol. 71(12), 2005
PMID: 16332735
Replacement Recombination in CoryneformBacteria: High Efficiency Integration Requirement for Non-methylatedPlasmid DNA
AUTHOR UNKNOWN, 1993
Synthetic promoter libraries for Corynebacterium glutamicum.
Rytter JV, Helmark S, Chen J, Lezyk MJ, Solem C, Jensen PR., Appl. Microbiol. Biotechnol. 98(6), 2014
PMID: 24458563
Large-scale engineering of the Corynebacterium glutamicum genome.
Suzuki N, Okayama S, Nonaka H, Tsuge Y, Inui M, Yukawa H., Appl. Environ. Microbiol. 71(6), 2005
PMID: 15933044
Tools for genetic manipulations in Corynebacterium glutamicum and their applications.
Nesvera J, Patek M., Appl. Microbiol. Biotechnol. 90(5), 2011
PMID: 21519933
Cre/loxP-mediated deletion system for large genome rearrangements in Corynebacterium glutamicum.
Suzuki N, Tsuge Y, Inui M, Yukawa H., Appl. Microbiol. Biotechnol. 67(2), 2004
PMID: 15834716

AUTHOR UNKNOWN, 2007
Metabolic engineering of Corynebacterium glutamicum for the production of L-ornithine.
Kim SY, Lee J, Lee SY., Biotechnol. Bioeng. 112(2), 2014
PMID: 25163446
Acetohydroxyacid synthase, a novel target for improvement of L-lysine production by Corynebacterium glutamicum.
Blombach B, Hans S, Bathe B, Eikmanns BJ., Appl. Environ. Microbiol. 75(2), 2008
PMID: 19047397
Phosphotransferase system-mediated glucose uptake is repressed in phosphoglucoisomerase-deficient Corynebacterium glutamicum strains.
Lindner SN, Petrov DP, Hagmann CT, Henrich A, Kramer R, Eikmanns BJ, Wendisch VF, Seibold GM., Appl. Environ. Microbiol. 79(8), 2013
PMID: 23396334
Export of L-isoleucine from Corynebacterium glutamicum: a two-gene-encoded member of a new translocator family.
Kennerknecht N, Sahm H, Yen MR, Patek M, Saier Jr MH Jr, Eggeling L., J. Bacteriol. 184(14), 2002
PMID: 12081967
Linking central metabolism with increased pathway flux: L-valine accumulation by Corynebacterium glutamicum.
Radmacher E, Vaitsikova A, Burger U, Krumbach K, Sahm H, Eggeling L., Appl. Environ. Microbiol. 68(5), 2002
PMID: 11976094
Improved L-lysine production with Corynebacterium glutamicum and systemic insight into citrate synthase flux and activity.
van Ooyen J, Noack S, Bott M, Reth A, Eggeling L., Biotechnol. Bioeng. 109(8), 2012
PMID: 22392073
Systems Biology:Definitions and Perspectives
AUTHOR UNKNOWN, 2005
Regulatory RNA-assisted genome engineering in microorganisms.
Si T, HamediRad M, Zhao H., Curr. Opin. Biotechnol. 36(), 2015
PMID: 26319896
Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs.
Na D, Yoo SM, Chung H, Park H, Park JH, Lee SY., Nat. Biotechnol. 31(2), 2013
PMID: 23334451
Bacterial small RNA-based negative regulation: Hfq and its accomplices.
De Lay N, Schu DJ, Gottesman S., J. Biol. Chem. 288(12), 2013
PMID: 23362267
Predicted structure and phyletic distribution of the RNA-binding protein Hfq.
Sun X, Zhulin I, Wartell RM., Nucleic Acids Res. 30(17), 2002
PMID: 12202750
Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032.
Mentz A, Neshat A, Pfeifer-Sancar K, Puhler A, Ruckert C, Kalinowski J., BMC Genomics 14(), 2013
PMID: 24138339
Chromosomally encoded small antisense RNA in Corynebacterium glutamicum.
Zemanova M, Kaderabkova P, Patek M, Knoppova M, Silar R, Nesvera J., FEMS Microbiol. Lett. 279(2), 2007
PMID: 18093135
Pathway analysis and metabolic engineering in Corynebacterium glutamicum.
Sahm H, Eggeling L, de Graaf AA., Biol. Chem. 381(9-10), 2000
PMID: 11076021
Biotechnological production of amino acids and derivatives: current status and prospects.
Leuchtenberger W, Huthmacher K, Drauz K., Appl. Microbiol. Biotechnol. 69(1), 2005
PMID: 16195792
CRISPR/Cas, the immune system of bacteria and archaea.
Horvath P, Barrangou R., Science 327(5962), 2010
PMID: 20056882
CRISPR/Cas system and its role in phage-bacteria interactions.
Deveau H, Garneau JE, Moineau S., Annu. Rev. Microbiol. 64(), 2010
PMID: 20528693
CRISPR interference (CRISPRi) for sequence-specific control of gene expression.
Larson MH, Gilbert LA, Wang X, Lim WA, Weissman JS, Qi LS., Nat Protoc 8(11), 2013
PMID: 24136345
Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system.
Bikard D, Jiang W, Samai P, Hochschild A, Zhang F, Marraffini LA., Nucleic Acids Res. 41(15), 2013
PMID: 23761437
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E., Science 337(6096), 2012
PMID: 22745249
CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes.
Gilbert LA, Larson MH, Morsut L, Liu Z, Brar GA, Torres SE, Stern-Ginossar N, Brandman O, Whitehead EH, Doudna JA, Lim WA, Weissman JS, Qi LS., Cell 154(2), 2013
PMID: 23849981
Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks.
Nielsen AA, Voigt CA., Mol. Syst. Biol. 10(), 2014
PMID: 25422271
Cloning and uses of a novelnucleotide sequence codingfor glucose-6-phosphate isomerase (gpi) from bacteria.
AUTHOR UNKNOWN, 2001
Characterization of the phosphoenolpyruvate carboxykinase gene from Corynebacterium glutamicum and significance of the enzyme for growth and amino acid production.
Riedel C, Rittmann D, Dangel P, Mockel B, Petersen S, Sahm H, Eikmanns BJ., J. Mol. Microbiol. Biotechnol. 3(4), 2001
PMID: 11565516
Roles of pyruvate kinase and malic enzyme in Corynebacterium glutamicum for growth on carbon sources requiring gluconeogenesis.
Netzer R, Krause M, Rittmann D, Peters-Wendisch PG, Eggeling L, Wendisch VF, Sahm H., Arch. Microbiol. 182(5), 2004
PMID: 15375646
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.
Qi LS, Larson MH, Gilbert LA, Doudna JA, Weissman JS, Arkin AP, Lim WA., Cell 152(5), 2013
PMID: 23452860
Engineered synthetic pathway for isopropanol production in Escherichia coli.
Hanai T, Atsumi S, Liao JC., Appl. Environ. Microbiol. 73(24), 2007
PMID: 17933911
CRISPR-Cas systems for editing, regulating and targeting genomes.
Sander JD, Joung JK., Nat. Biotechnol. 32(4), 2014
PMID: 24584096
Cas9 as a versatile tool for engineering biology.
Mali P, Esvelt KM, Church GM., Nat. Methods 10(10), 2013
PMID: 24076990
Exploiting CRISPR/Cas systems for biotechnology.
Sampson TR, Weiss DS., Bioessays 36(1), 2014
PMID: 24323919
RNA-guided gene activation by CRISPR-Cas9-based transcription factors.
Perez-Pinera P, Kocak DD, Vockley CM, Adler AF, Kabadi AM, Polstein LR, Thakore PI, Glass KA, Ousterout DG, Leong KW, Guilak F, Crawford GE, Reddy TE, Gersbach CA., Nat. Methods 10(10), 2013
PMID: 23892895
RNA-guided editing of bacterial genomes using CRISPR-Cas systems.
Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA., Nat. Biotechnol. 31(3), 2013
PMID: 23360965
Enhanced killing of antibiotic-resistant bacteria enabled by massively parallel combinatorial genetics.
Cheng AA, Ding H, Lu TK., Proc. Natl. Acad. Sci. U.S.A. 111(34), 2014
PMID: 25114216
A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level.
Binder S, Schendzielorz G, Stabler N, Krumbach K, Hoffmann K, Bott M, Eggeling L., Genome Biol. 13(5), 2012
PMID: 22640862
The development and application of a single-cell biosensor for the detection of l-methionine and branched-chain amino acids.
Mustafi N, Grunberger A, Kohlheyer D, Bott M, Frunzke J., Metab. Eng. 14(4), 2012
PMID: 22583745
Localization of FtsI (PBP3) to the septal ring requires its membrane anchor, the Z ring, FtsA, FtsQ, and FtsL.
Weiss DS, Chen JC, Ghigo JM, Boyd D, Beckwith J., J. Bacteriol. 181(2), 1999
PMID: 9882665
Integrativeand autonomouslyreplicating vectors for analysis of promoters in Corynebacteriumglutamicum
AUTHOR UNKNOWN, 1998
A signaling network reciprocally regulates genes associated with acute infection and chronic persistence in Pseudomonas aeruginosa.
Goodman AL, Kulasekara B, Rietsch A, Boyd D, Smith RS, Lory S., Dev. Cell 7(5), 2004
PMID: 15525535
Enzymatic assembly of DNA molecules up to several hundred kilobases.
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA 3rd, Smith HO., Nat. Methods 6(5), 2009
PMID: 19363495

AUTHOR UNKNOWN, 2005
Ethambutol, a cell wall inhibitor of Mycobacterium tuberculosis, elicits L-glutamate efflux of Corynebacterium glutamicum.
Radmacher E, Stansen KC, Besra GS, Alderwick LJ, Maughan WN, Hollweg G, Sahm H, Wendisch VF, Eggeling L., Microbiology (Reading, Engl.) 151(Pt 5), 2005
PMID: 15870446
Gene expression analysis of Corynebacterium glutamicum subjected to long-term lactic acid adaptation.
Jakob K, Satorhelyi P, Lange C, Wendisch VF, Silakowski B, Scherer S, Neuhaus K., J. Bacteriol. 189(15), 2007
PMID: 17526706

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 26829286
PubMed | Europe PMC

Suchen in

Google Scholar