Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen
Merten M, Brinkrolf K, Albersmeier A, Kutter Y, Rückert C, Tauch A (2015)
Genome Announcements 3(2): e00183-15.
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Einrichtung
Abstract / Bemerkung
Corynebacterium singulare DSM 44357 is a urease-positive microorganism isolated from human semen. The complete genome sequence of C. singulare DSM 44357 comprises 2,830,519 bp with a mean G+C content of 60.12% and 2,581 protein-coding genes. The deduced antibiotic resistance pattern of this strain includes macrolides, lincosamides, aminoglycosides, chloramphenicol, and tetracyline.
Erscheinungsjahr
2015
Zeitschriftentitel
Genome Announcements
Band
3
Ausgabe
2
Art.-Nr.
e00183-15
ISSN
2169-8287
Page URI
https://pub.uni-bielefeld.de/record/2728042
Zitieren
Merten M, Brinkrolf K, Albersmeier A, Kutter Y, Rückert C, Tauch A. Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen. Genome Announcements. 2015;3(2): e00183-15.
Merten, M., Brinkrolf, K., Albersmeier, A., Kutter, Y., Rückert, C., & Tauch, A. (2015). Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen. Genome Announcements, 3(2), e00183-15. doi:10.1128/genomeA.00183-15
Merten, Madlen, Brinkrolf, Karina, Albersmeier, Andreas, Kutter, Yvonne, Rückert, Christian, and Tauch, Andreas. 2015. “Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen”. Genome Announcements 3 (2): e00183-15.
Merten, M., Brinkrolf, K., Albersmeier, A., Kutter, Y., Rückert, C., and Tauch, A. (2015). Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen. Genome Announcements 3:e00183-15.
Merten, M., et al., 2015. Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen. Genome Announcements, 3(2): e00183-15.
M. Merten, et al., “Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen”, Genome Announcements, vol. 3, 2015, : e00183-15.
Merten, M., Brinkrolf, K., Albersmeier, A., Kutter, Y., Rückert, C., Tauch, A.: Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen. Genome Announcements. 3, : e00183-15 (2015).
Merten, Madlen, Brinkrolf, Karina, Albersmeier, Andreas, Kutter, Yvonne, Rückert, Christian, and Tauch, Andreas. “Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen”. Genome Announcements 3.2 (2015): e00183-15.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
UNIPROT
2559 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden
Putative fluoride ion transporter CrcB (UNIPROT: A0A0B6F5L7)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
Translation elongation factor P (EF-P) (UNIPROT: A0A0B6F4U9)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
DNA repair protein RecN (UNIPROT: A0A0B6F4N4)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
Putative sporulation transcription regulator WhiA (UNIPROT: A0A0B6F317)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
PTS system IIA component (UNIPROT: A0A0B6F608)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
DNA repair protein RecO (UNIPROT: A0A0B6ESP1)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein (UNIPROT: A0A0B6F2V2)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase (UNIPROT: A0A0B6EZC2)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
Single-stranded DNA-binding protein (UNIPROT: A0A0B6F7N3)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
ATP synthase epsilon chain (UNIPROT: A0A0B6EV56)
Organism: Corynebacterium singulare
Download in FASTA format
Organism: Corynebacterium singulare
Download in FASTA format
EMBL
1 Eintrag gefunden, die diesen Artikel zitieren
Corynebacterium singulare strain IBS B52218, complete genome. (EMBL: CP010827)
Sequence length: 2830519
Download in FASTA format
Sequence length: 2830519
Download in FASTA format
Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
21 References
Daten bereitgestellt von Europe PubMed Central.
Bacterial community variation in human body habitats across space and time.
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R., Science 326(5960), 2009
PMID: 19892944
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R., Science 326(5960), 2009
PMID: 19892944
Topographical and temporal diversity of the human skin microbiome.
Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC; NISC Comparative Sequencing Program, Bouffard GG, Blakesley RW, Murray PR, Green ED, Turner ML, Segre JA., Science 324(5931), 2009
PMID: 19478181
Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC; NISC Comparative Sequencing Program, Bouffard GG, Blakesley RW, Murray PR, Green ED, Turner ML, Segre JA., Science 324(5931), 2009
PMID: 19478181
Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis.
Kong HH, Oh J, Deming C, Conlan S, Grice EA, Beatson MA, Nomicos E, Polley EC, Komarow HD; NISC Comparative Sequence Program, Murray PR, Turner ML, Segre JA, Mullikin J, Thomas J, Blakesley R, Young A, Chu G, Ramsahoye C, Lovett S, Han J, Legaspi R, Sison C, Montemayor C, Gregory M, Hargrove A, Johnson T, Riebow N, Schmidt B, Novotny B, Gupta J, Benjamin B, Brooks S, Coleman H, Ho SL, Schandler K, Stantripop M, Maduro Q, Bouffard G, Dekhtyar M, Guan X, Masiello C, Maskeri B, McDowell J, Park M, Vemulapalli M., Genome Res. 22(5), 2012
PMID: 22310478
Kong HH, Oh J, Deming C, Conlan S, Grice EA, Beatson MA, Nomicos E, Polley EC, Komarow HD; NISC Comparative Sequence Program, Murray PR, Turner ML, Segre JA, Mullikin J, Thomas J, Blakesley R, Young A, Chu G, Ramsahoye C, Lovett S, Han J, Legaspi R, Sison C, Montemayor C, Gregory M, Hargrove A, Johnson T, Riebow N, Schmidt B, Novotny B, Gupta J, Benjamin B, Brooks S, Coleman H, Ho SL, Schandler K, Stantripop M, Maduro Q, Bouffard G, Dekhtyar M, Guan X, Masiello C, Maskeri B, McDowell J, Park M, Vemulapalli M., Genome Res. 22(5), 2012
PMID: 22310478
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Corynebacterium singulare sp. nov., a new species for urease-positive strains related to Corynebacterium minutissimum.
Riegel P, Ruimy R, Renaud FN, Freney J, Prevost G, Jehl F, Christen R, Monteil H., Int. J. Syst. Bacteriol. 47(4), 1997
PMID: 9336912
Riegel P, Ruimy R, Renaud FN, Freney J, Prevost G, Jehl F, Christen R, Monteil H., Int. J. Syst. Bacteriol. 47(4), 1997
PMID: 9336912
Molecular analysis of human forearm superficial skin bacterial biota.
Gao Z, Tseng CH, Pei Z, Blaser MJ., Proc. Natl. Acad. Sci. U.S.A. 104(8), 2007
PMID: 17293459
Gao Z, Tseng CH, Pei Z, Blaser MJ., Proc. Natl. Acad. Sci. U.S.A. 104(8), 2007
PMID: 17293459
The genus corynebacterium and other medically relevant coryneform-like bacteria.
Bernard K., J. Clin. Microbiol. 50(10), 2012
PMID: 22837327
Bernard K., J. Clin. Microbiol. 50(10), 2012
PMID: 22837327
Coaggregation occurs amongst bacteria within and between biofilms in domestic showerheads.
Vornhagen J, Stevens M, McCormick DW, Dowd SE, Eisenberg JN, Boles BR, Rickard AH., Biofouling 29(1), 2013
PMID: 23194413
Vornhagen J, Stevens M, McCormick DW, Dowd SE, Eisenberg JN, Boles BR, Rickard AH., Biofouling 29(1), 2013
PMID: 23194413
Whole-Genome Sequence of the Clinical Strain Corynebacterium argentoratense DSM 44202, Isolated from a Human Throat Specimen.
Bomholt C, Glaub A, Gravermann K, Albersmeier A, Brinkrolf K, Ruckert C, Tauch A., Genome Announc 1(5), 2013
PMID: 24092787
Bomholt C, Glaub A, Gravermann K, Albersmeier A, Brinkrolf K, Ruckert C, Tauch A., Genome Announc 1(5), 2013
PMID: 24092787
r2cat: synteny plots and comparative assembly.
Husemann P, Stoye J., Bioinformatics 26(4), 2009
PMID: 20015948
Husemann P, Stoye J., Bioinformatics 26(4), 2009
PMID: 20015948
Consed: a graphical editor for next-generation sequencing.
Gordon D, Green P., Bioinformatics 29(22), 2013
PMID: 23995391
Gordon D, Green P., Bioinformatics 29(22), 2013
PMID: 23995391
Prodigal: prokaryotic gene recognition and translation initiation site identification.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ., BMC Bioinformatics 11(), 2010
PMID: 20211023
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ., BMC Bioinformatics 11(), 2010
PMID: 20211023
IMG 4 version of the integrated microbial genomes comparative analysis system.
Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Pillay M, Ratner A, Huang J, Woyke T, Huntemann M, Anderson I, Billis K, Varghese N, Mavromatis K, Pati A, Ivanova NN, Kyrpides NC., Nucleic Acids Res. 42(Database issue), 2013
PMID: 24165883
Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Pillay M, Ratner A, Huang J, Woyke T, Huntemann M, Anderson I, Billis K, Varghese N, Mavromatis K, Pati A, Ivanova NN, Kyrpides NC., Nucleic Acids Res. 42(Database issue), 2013
PMID: 24165883
Update on macrolide-lincosamide-streptogramin, ketolide, and oxazolidinone resistance genes.
Roberts MC., FEMS Microbiol. Lett. 282(2), 2008
PMID: 18399991
Roberts MC., FEMS Microbiol. Lett. 282(2), 2008
PMID: 18399991
The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens.
Tauch A, Krieft S, Kalinowski J, Puhler A., Mol. Gen. Genet. 263(1), 2000
PMID: 10732668
Tauch A, Krieft S, Kalinowski J, Puhler A., Mol. Gen. Genet. 263(1), 2000
PMID: 10732668
Corynebacterium striatum chloramphenicol resistance transposon Tn5564: genetic organization and transposition in Corynebacterium glutamicum.
Tauch A, Zheng Z, Puhler A, Kalinowski J., Plasmid 40(2), 1998
PMID: 9735314
Tauch A, Zheng Z, Puhler A, Kalinowski J., Plasmid 40(2), 1998
PMID: 9735314
Versatility of aminoglycosides and prospects for their future.
Vakulenko SB, Mobashery S., Clin. Microbiol. Rev. 16(3), 2003
PMID: 12857776
Vakulenko SB, Mobashery S., Clin. Microbiol. Rev. 16(3), 2003
PMID: 12857776
Expression and identification of the strA-strB gene pair from streptomycin-resistant Erwinia amylovora.
Chiou CS, Jones AL., Gene 152(1), 1995
PMID: 7828927
Chiou CS, Jones AL., Gene 152(1), 1995
PMID: 7828927
The tetAB genes of the Corynebacterium striatum R-plasmid pTP10 encode an ABC transporter and confer tetracycline, oxytetracycline and oxacillin resistance in Corynebacterium glutamicum.
Tauch A, Krieft S, Puhler A, Kalinowski J., FEMS Microbiol. Lett. 173(1), 1999
PMID: 10220896
Tauch A, Krieft S, Puhler A, Kalinowski J., FEMS Microbiol. Lett. 173(1), 1999
PMID: 10220896
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