The environmental controls that govern the end product of bacterial nitrate respiration.

Kraft B, Tegetmeyer H, Sharma R, Klotz M, Ferdelman T, Hettich R, Geelhoed J, Strous M (2014)
Science 345(6197): 676-679.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
; ; ; ; ; ; ;
Abstract / Bemerkung
In the biogeochemical nitrogen cycle, microbial respiration processes compete for nitrate as an electron acceptor. Denitrification converts nitrate into nitrogenous gas and thus removes fixed nitrogen from the biosphere, whereas ammonification converts nitrate into ammonium, which is directly reusable by primary producers. We combined multiple parallel long-term incubations of marine microbial nitrate-respiring communities with isotope labeling and metagenomics to unravel how specific environmental conditions select for either process. Microbial generation time, supply of nitrite relative to nitrate, and the carbon/nitrogen ratio were identified as key environmental controls that determine whether nitrite will be reduced to nitrogenous gas or ammonium. Our results define the microbial ecophysiology of a biogeochemical feedback loop that is key to global change, eutrophication, and wastewater treatment.
Erscheinungsjahr
Zeitschriftentitel
Science
Band
345
Ausgabe
6197
Seite(n)
676-679
ISSN
eISSN
PUB-ID

Zitieren

Kraft B, Tegetmeyer H, Sharma R, et al. The environmental controls that govern the end product of bacterial nitrate respiration. Science. 2014;345(6197):676-679.
Kraft, B., Tegetmeyer, H., Sharma, R., Klotz, M., Ferdelman, T., Hettich, R., Geelhoed, J., et al. (2014). The environmental controls that govern the end product of bacterial nitrate respiration. Science, 345(6197), 676-679. doi:10.1126/science.1254070
Kraft, B., Tegetmeyer, H., Sharma, R., Klotz, M., Ferdelman, T., Hettich, R., Geelhoed, J., and Strous, M. (2014). The environmental controls that govern the end product of bacterial nitrate respiration. Science 345, 676-679.
Kraft, B., et al., 2014. The environmental controls that govern the end product of bacterial nitrate respiration. Science, 345(6197), p 676-679.
B. Kraft, et al., “The environmental controls that govern the end product of bacterial nitrate respiration.”, Science, vol. 345, 2014, pp. 676-679.
Kraft, B., Tegetmeyer, H., Sharma, R., Klotz, M., Ferdelman, T., Hettich, R., Geelhoed, J., Strous, M.: The environmental controls that govern the end product of bacterial nitrate respiration. Science. 345, 676-679 (2014).
Kraft, Beate, Tegetmeyer, Halina, Sharma, Ritin, Klotz, Martin, Ferdelman, Timothy, Hettich, Robert, Geelhoed, Jeanine, and Strous, Marc. “The environmental controls that govern the end product of bacterial nitrate respiration.”. Science 345.6197 (2014): 676-679.

51 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Resource Concentration Modulates the Fate of Dissimilated Nitrogen in a Dual-Pathway Actinobacterium.
Vuono DC, Read RW, Hemp J, Sullivan BW, Arnone JA, Neveux I, Blank RR, Loney E, Miceli D, Winkler MH, Chakraborty R, Stahl DA, Grzymski JJ., Front Microbiol 10(), 2019
PMID: 30723459
Lactobacillus Dominate in the Intestine of Atlantic Salmon Fed Dietary Probiotics.
Gupta S, Fečkaninová A, Lokesh J, Koščová J, Sørensen M, Fernandes J, Kiron V., Front Microbiol 9(), 2018
PMID: 30700981
The microbial nitrogen-cycling network.
Kuypers MMM, Marchant HK, Kartal B., Nat Rev Microbiol 16(5), 2018
PMID: 29398704
Microbial pathways for nitrogen loss in an upland soil.
Zhu G, Wang S, Li Y, Zhuang L, Zhao S, Wang C, Kuypers MMM, Jetten MSM, Zhu Y., Environ Microbiol 20(5), 2018
PMID: 29528547
Filamentous Giant Beggiatoaceae from the Guaymas Basin Are Capable of both Denitrification and Dissimilatory Nitrate Reduction to Ammonium.
Schutte CA, Teske A, MacGregor BJ, Salman-Carvalho V, Lavik G, Hach P, de Beer D., Appl Environ Microbiol 84(15), 2018
PMID: 29802192
Distinct Microbial Community Performing Dissimilatory Nitrate Reduction to Ammonium (DNRA) in a High C/NO3- Reactor.
Chutivisut P, Isobe K, Powtongsook S, Pungrasmi W, Kurisu F., Microbes Environ 33(3), 2018
PMID: 30089740
Evidence for complete nitrification in enrichment culture of tidal sediments and diversity analysis of clade a comammox Nitrospira in natural environments.
Yu C, Hou L, Zheng Y, Liu M, Yin G, Gao J, Liu C, Chang Y, Han P., Appl Microbiol Biotechnol 102(21), 2018
PMID: 30094589
Freshwater copepod carcasses as pelagic microsites of dissimilatory nitrate reduction to ammonium.
Stief P, Lundgaard ASB, Treusch AH, Thamdrup B, Grossart HP, Glud RN., FEMS Microbiol Ecol 94(10), 2018
PMID: 30060193
Copepod-Associated Gammaproteobacteria Respire Nitrate in the Open Ocean Surface Layers.
Moisander PH, Shoemaker KM, Daley MC, McCliment E, Larkum J, Altabet MA., Front Microbiol 9(), 2018
PMID: 30369912
Differentiated Mechanisms of Biochar Mitigating Straw-Induced Greenhouse Gas Emissions in Two Contrasting Paddy Soils.
Wang YQ, Bai R, Di HJ, Mo LY, Han B, Zhang LM, He JZ., Front Microbiol 9(), 2018
PMID: 30483220
Organization of biogeochemical nitrogen pathways with switch-like adjustment in fluctuating soil redox conditions.
Lamba S, Bera S, Rashid M, Medvinsky AB, Sun GQ, Acquisti C, Chakraborty A, Li BL., R Soc Open Sci 4(1), 2017
PMID: 28280580
Impacts of chemical gradients on microbial community structure.
Chen J, Hanke A, Tegetmeyer HE, Kattelmann I, Sharma R, Hamann E, Hargesheimer T, Kraft B, Lenk S, Geelhoed JS, Hettich RL, Strous M., ISME J 11(4), 2017
PMID: 28094795
Subsurface nitrate reduction under wetlands takes place in narrow superficial zones.
Ribas D, Calderer M, Marti V, Johnsen AR, Aamand J, Nilsson B, Jensen JK, Engesgaard P, Morici C., Environ Technol 38(21), 2017
PMID: 28004595
Respiratory Ammonification of Nitrate Coupled to Anaerobic Oxidation of Elemental Sulfur in Deep-Sea Autotrophic Thermophilic Bacteria.
Slobodkina GB, Mardanov AV, Ravin NV, Frolova AA, Chernyh NA, Bonch-Osmolovskaya EA, Slobodkin AI., Front Microbiol 8(), 2017
PMID: 28194142
Unexpected Diversity and High Abundance of Putative Nitric Oxide Dismutase (Nod) Genes in Contaminated Aquifers and Wastewater Treatment Systems.
Zhu B, Bradford L, Huang S, Szalay A, Leix C, Weissbach M, Táncsics A, Drewes JE, Lueders T., Appl Environ Microbiol 83(4), 2017
PMID: 27986721
Model-based quantification of metabolic interactions from dynamic microbial-community data.
Hanemaaijer M, Olivier BG, Röling WF, Bruggeman FJ, Teusink B., PLoS One 12(3), 2017
PMID: 28278266
Role of nitrite in the competition between denitrification and DNRA in a chemostat enrichment culture.
van den Berg EM, Rombouts JL, Kuenen JG, Kleerebezem R, van Loosdrecht MCM., AMB Express 7(1), 2017
PMID: 28497287
Depth of the vadose zone controls aquifer biogeochemical conditions and extent of anthropogenic nitrogen removal.
Szymczycha B, Kroeger KD, Crusius J, Bratton JF., Water Res 123(), 2017
PMID: 28750329
Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill.
Handley KM, Piceno YM, Hu P, Tom LM, Mason OU, Andersen GL, Jansson JK, Gilbert JA., ISME J 11(11), 2017
PMID: 28777379
Fermentative Bacteria Influence the Competition between Denitrifiers and DNRA Bacteria.
van den Berg EM, Elisário MP, Kuenen JG, Kleerebezem R, van Loosdrecht MCM., Front Microbiol 8(), 2017
PMID: 28928722
Enhancing Nitrate Removal from Freshwater Pond by Regulating Carbon/Nitrogen Ratio.
Chen R, Deng M, He X, Hou J., Front Microbiol 8(), 2017
PMID: 28943869
Microbial Fe(III) oxide reduction potential in Chocolate Pots hot spring, Yellowstone National Park.
Fortney NW, He S, Converse BJ, Beard BL, Johnson CM, Boyd ES, Roden EE., Geobiology 14(3), 2016
PMID: 26750514
Metagenomic analysis of anammox communities in three different microbial aggregates.
Guo J, Peng Y, Fan L, Zhang L, Ni BJ, Kartal B, Feng X, Jetten MS, Yuan Z., Environ Microbiol 18(9), 2016
PMID: 26568531
Tidal pumping facilitates dissimilatory nitrate reduction in intertidal marshes.
Zheng Y, Hou L, Liu M, Liu Z, Li X, Lin X, Yin G, Gao J, Yu C, Wang R, Jiang X., Sci Rep 6(), 2016
PMID: 26883983
Habitat partitioning of marine benthic denitrifier communities in response to oxygen availability.
Wittorf L, Bonilla-Rosso G, Jones CM, Bäckman O, Hulth S, Hallin S., Environ Microbiol Rep 8(4), 2016
PMID: 26929183
Controls of Sediment Nitrogen Dynamics in Tropical Coastal Lagoons.
Enrich-Prast A, Figueiredo V, Esteves Fde A, Nielsen LP., PLoS One 11(5), 2016
PMID: 27175907
Enrichment of denitratating bacteria from a methylotrophic denitrifying culture.
Li W, Lin XY, Chen JJ, Cai CY, Abbas G, Hu ZQ, Zhao HP, Zheng P., Appl Microbiol Biotechnol 100(23), 2016
PMID: 27709289
DNRA and Denitrification Coexist over a Broad Range of Acetate/N-NO3- Ratios, in a Chemostat Enrichment Culture.
van den Berg EM, Boleij M, Kuenen JG, Kleerebezem R, van Loosdrecht MC., Front Microbiol 7(), 2016
PMID: 27933040
Physiological characterization of anaerobic ammonium oxidizing bacterium 'Candidatus Jettenia caeni'.
Ali M, Oshiki M, Awata T, Isobe K, Kimura Z, Yoshikawa H, Hira D, Kindaichi T, Satoh H, Fujii T, Okabe S., Environ Microbiol 17(6), 2015
PMID: 25367004
Nitrate ammonification in mangrove soils: a hidden source of nitrite?
Balk M, Laverman AM, Keuskamp JA, Laanbroek HJ., Front Microbiol 6(), 2015
PMID: 25784903
Genetic and environmental controls on nitrous oxide accumulation in lakes.
Saarenheimo J, Rissanen AJ, Arvola L, Nykänen H, Lehmann MF, Tiirola M., PLoS One 10(3), 2015
PMID: 25756328
Nitrite Control over Dissimilatory Nitrate/Nitrite Reduction Pathways in Shewanella loihica Strain PV-4.
Yoon S, Sanford RA, Löffler FE., Appl Environ Microbiol 81(10), 2015
PMID: 25769828
Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure.
Hanemaaijer M, Röling WF, Olivier BG, Khandelwal RA, Teusink B, Bruggeman FJ., Front Microbiol 6(), 2015
PMID: 25852671
Enrichment of DNRA bacteria in a continuous culture.
van den Berg EM, van Dongen U, Abbas B, van Loosdrecht MC., ISME J 9(10), 2015
PMID: 25909972
Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics.
Kantor RS, van Zyl AW, van Hille RP, Thomas BC, Harrison ST, Banfield JF., Environ Microbiol 17(12), 2015
PMID: 26031303
Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira.
Koch H, Lücker S, Albertsen M, Kitzinger K, Herbold C, Spieck E, Nielsen PH, Wagner M, Daims H., Proc Natl Acad Sci U S A 112(36), 2015
PMID: 26305944

29 References

Daten bereitgestellt von Europe PubMed Central.

The global nitrogen cycle in the twenty-first century.
Fowler D, Coyle M, Skiba U, Sutton MA, Cape JN, Reis S, Sheppard LJ, Jenkins A, Grizzetti B, Galloway JN, Vitousek P, Leach A, Bouwman AF, Butterbach-Bahl K, Dentener F, Stevenson D, Amann M, Voss M., Philos. Trans. R. Soc. Lond., B, Biol. Sci. 368(1621), 2013
PMID: 23713126

AUTHOR UNKNOWN, Antonie Van Leeuwenhoek 48(), 1983
Growth yields in bacterial denitrification and nitrate ammonification.
Strohm TO, Griffin B, Zumft WG, Schink B., Appl. Environ. Microbiol. 73(5), 2007
PMID: 17209072
Electron donor effect on nitrate reduction pathway and kinetics in a mixed methanogenic culture.
Tugtas AE, Pavlostathis SG., Biotechnol. Bioeng. 98(4), 2007
PMID: 17492695

AUTHOR UNKNOWN, LIMNOL OCEANOGR 56(), 2011

AUTHOR UNKNOWN, Water Res. 27(), 1993

AUTHOR UNKNOWN, FEMS Microbiol. Ecol. 23(1), 1997

AUTHOR UNKNOWN, FEMS Microbiol. Ecol. 21(2), 1996
Elucidation of nitrate reduction pathways in anaerobic bioreactors using a stable isotope approach.
Mazeas L, Vigneron V, Le-Menach K, Budzinski H, Audic JM, Bernet N, Bouchez T., Rapid Commun. Mass Spectrom. 22(11), 2008
PMID: 18438762

AUTHOR UNKNOWN, BIOGEOSCIENCES 10(), 2013

AUTHOR UNKNOWN, LIMNOL OCEANOGR 57(), 2012

Joye, Science 270(5236), 1995
Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale.
Bru D, Ramette A, Saby NP, Dequiedt S, Ranjard L, Jolivet C, Arrouays D, Philippot L., ISME J 5(3), 2010
PMID: 20703315
The systemic imprint of growth and its uses in ecological (meta)genomics.
Vieira-Silva S, Rocha EP., PLoS Genet. 6(1), 2010
PMID: 20090831

AUTHOR UNKNOWN, Frontiers in Microbiology 5(), 2014

AUTHOR UNKNOWN, Frontiers in Microbiology 4(), 2013
A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast.
Canfield DE, Stewart FJ, Thamdrup B, De Brabandere L, Dalsgaard T, Delong EF, Revsbech NP, Ulloa O., Science 330(6009), 2010
PMID: 21071631
Microbial nitrate respiration--genes, enzymes and environmental distribution.
Kraft B, Strous M, Tegetmeyer HE., J. Biotechnol. 155(1), 2011
PMID: 21219945
Cell biology and molecular basis of denitrification.
Zumft WG., Microbiol. Mol. Biol. Rev. 61(4), 1997
PMID: 9409151

AUTHOR UNKNOWN, Limnol Oceanogr Methods 2(), 2004

AUTHOR UNKNOWN, Frontiers in Microbiology 3(), 2012
ARB: a software environment for sequence data.
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar , Buchner A, Lai T, Steppi S, Jobb G, Forster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, Konig A, Liss T, Lussmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH., Nucleic Acids Res. 32(4), 2004
PMID: 14985472
A rapid bootstrap algorithm for the RAxML Web servers.
Stamatakis A, Hoover P, Rougemont J., Syst. Biol. 57(5), 2008
PMID: 18853362
Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria.
Klotz MG, Schmid MC, Strous M, op den Camp HJ, Jetten MS, Hooper AB., Environ. Microbiol. 10(11), 2008
PMID: 18761666
Bayesian phylogenetics with BEAUti and the BEAST 1.7.
Drummond AJ, Suchard MA, Xie D, Rambaut A., Mol. Biol. Evol. 29(8), 2012
PMID: 22367748

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 25104387
PubMed | Europe PMC

Suchen in

Google Scholar