Alternative splicing at the intersection of biological timing, development, and stress responses

Staiger D, Brown JWS (2013)
The Plant cell 25(10): 3640-3656.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Staiger, DorotheeUniBi; Brown, John W. S.
Einrichtung
Fakultät für Biologie > RNA Biologie und Molekulare Physiologie
Abstract / Bemerkung
High-throughput sequencing for transcript profiling in plants has revealed that alternative splicing (AS) affects a much higher proportion of the transcriptome than was previously assumed. AS is involved in most plant processes and is particularly prevalent in plants exposed to environmental stress. The identification of mutations in predicted splicing factors and spliceosomal proteins that affect cell fate, the circadian clock, plant defense, and tolerance/sensitivity to abiotic stress all point to a fundamental role of splicing/AS in plant growth, development, and responses to external cues. Splicing factors affect the AS of multiple downstream target genes, thereby transferring signals to alter gene expression via splicing factor/AS networks. The last two to three years have seen an ever-increasing number of examples of functional AS. At a time when the identification of AS in individual genes and at a global level is exploding, this review aims to bring together such examples to illustrate the extent and importance of AS, which are not always obvious from individual publications. It also aims to ensure that plant scientists are aware that AS is likely to occur in the genes that they study and that dynamic changes in AS and its consequences need to be considered routinely.
Erscheinungsjahr
2013
Zeitschriftentitel
The Plant cell
Band
25
Ausgabe
10
Seite(n)
3640-3656
ISSN
1040-4651
eISSN
1532-298X
Page URI
https://pub.uni-bielefeld.de/record/2641484

Zitieren

Staiger D, Brown JWS. Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell. 2013;25(10):3640-3656.
Staiger, D., & Brown, J. W. S. (2013). Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell, 25(10), 3640-3656. https://doi.org/10.1105/tpc.113.113803
Staiger, Dorothee, and Brown, John W. S. 2013. “Alternative splicing at the intersection of biological timing, development, and stress responses”. The Plant cell 25 (10): 3640-3656.
Staiger, D., and Brown, J. W. S. (2013). Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell 25, 3640-3656.
Staiger, D., & Brown, J.W.S., 2013. Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell, 25(10), p 3640-3656.
D. Staiger and J.W.S. Brown, “Alternative splicing at the intersection of biological timing, development, and stress responses”, The Plant cell, vol. 25, 2013, pp. 3640-3656.
Staiger, D., Brown, J.W.S.: Alternative splicing at the intersection of biological timing, development, and stress responses. The Plant cell. 25, 3640-3656 (2013).
Staiger, Dorothee, and Brown, John W. S. “Alternative splicing at the intersection of biological timing, development, and stress responses”. The Plant cell 25.10 (2013): 3640-3656.

178 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Emerging Roles of LSM Complexes in Posttranscriptional Regulation of Plant Response to Abiotic Stress.
Catalá R, Carrasco-López C, Perea-Resa C, Hernández-Verdeja T, Salinas J., Front Plant Sci 10(), 2019
PMID: 30873189
Comprehensive identification of the full-length transcripts and alternative splicing related to the secondary metabolism pathways in the tea plant (Camellia sinensis).
Qiao D, Yang C, Chen J, Guo Y, Li Y, Niu S, Cao K, Chen Z., Sci Rep 9(1), 2019
PMID: 30804390
Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs.
Calixto CPG, Tzioutziou NA, James AB, Hornyik C, Guo W, Zhang R, Nimmo HG, Brown JWS., Front Plant Sci 10(), 2019
PMID: 30891054
Genome-Wide Identification, Expression Profile, and Alternative Splicing Analysis of the Brassinosteroid-Signaling Kinase (BSK) Family Genes in Arabidopsis.
Li Z, Shen J, Liang J., Int J Mol Sci 20(5), 2019
PMID: 30845672
Meta-Analysis of Salt Stress Transcriptome Responses in Different Rice Genotypes at the Seedling Stage.
Kong W, Zhong H, Gong Z, Fang X, Sun T, Deng X, Li Y., Plants (Basel) 8(3), 2019
PMID: 30871082
Brassica napus Infected with Leptosphaeria maculans.
Ma JQ, Wei LJ, Lin A, Zhang C, Sun W, Yang B, Lu K, Li JN., Genes (Basel) 10(4), 2019
PMID: 30979089
Expanding Alternative Splicing Identification by Integrating Multiple Sources of Transcription Data in Tomato.
Clark S, Yu F, Gu L, Min XJ., Front Plant Sci 10(), 2019
PMID: 31191588
New Era in Plant Alternative Splicing Analysis Enabled by Advances in High-Throughput Sequencing (HTS) Technologies.
Bedre R, Irigoyen S, Petrillo E, Mandadi KK., Front Plant Sci 10(), 2019
PMID: 31231413
Evolution of Alternative Splicing in Eudicots.
Ling Z, Brockmöller T, Baldwin IT, Xu S., Front Plant Sci 10(), 2019
PMID: 31244865
Comparative transcriptome analysis reveals important roles of nonadditive genes in maize hybrid An'nong 591 under heat stress.
Zhao Y, Hu F, Zhang X, Wei Q, Dong J, Bo C, Cheng B, Ma Q., BMC Plant Biol 19(1), 2019
PMID: 31234785
Amplification of miniature inverted-repeat transposable elements and the associated impact on gene regulation and alternative splicing in mulberry (Morus notabilis).
Xin Y, Ma B, Xiang Z, He N., Mob DNA 10(), 2019
PMID: 31289464
Global profiling of alternative splicing landscape responsive to drought, heat and their combination in wheat (Triticum aestivum L.).
Liu Z, Qin J, Tian X, Xu S, Wang Y, Li H, Wang X, Peng H, Yao Y, Hu Z, Ni Z, Xin M, Sun Q., Plant Biotechnol J 16(3), 2018
PMID: 28834352
Genome-wide Analysis of Alternative Splicing in An Inbred Cabbage (Brassica oleracea L.) Line 'HO' in Response to Heat Stress.
Lee SS, Jung WY, Park HJ, Lee A, Kwon SY, Kim HS, Cho HS., Curr Genomics 19(1), 2018
PMID: 29491729
The comparison of alternative splicing among the multiple tissues in cucumber.
Sun Y, Hou H, Song H, Lin K, Zhang Z, Hu J, Pang E., BMC Plant Biol 18(1), 2018
PMID: 29301488
Development of an in vitro pre-mRNA splicing assay using plant nuclear extract.
Albaqami M, Reddy ASN., Plant Methods 14(), 2018
PMID: 29321806
Single-Cell Genomic Analysis in Plants.
Yuan Y, Lee H, Hu H, Scheben A, Edwards D., Genes (Basel) 9(1), 2018
PMID: 29361790
Spliceosomal protein U1A is involved in alternative splicing and salt stress tolerance in Arabidopsis thaliana.
Gu J, Xia Z, Luo Y, Jiang X, Qian B, Xie H, Zhu JK, Xiong L, Zhu J, Wang ZY., Nucleic Acids Res 46(4), 2018
PMID: 29228330
MicroRNA1917 targets CTR4 splice variants to regulate ethylene responses in tomato.
Wang Y, Zou W, Xiao Y, Cheng L, Liu Y, Gao S, Shi Z, Jiang Y, Qi M, Xu T, Li T., J Exp Bot 69(5), 2018
PMID: 29365162
Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching.
Filichkin SA, Hamilton M, Dharmawardhana PD, Singh SK, Sullivan C, Ben-Hur A, Reddy ASN, Jaiswal P., Front Plant Sci 9(), 2018
PMID: 29483921
Subcellular Compartmentation of Alternatively Spliced Transcripts Defines SERINE/ARGININE-RICH PROTEIN30 Expression.
Hartmann L, Wießner T, Wachter A., Plant Physiol 176(4), 2018
PMID: 29496883
Capturing the Alternative Cleavage and Polyadenylation Sites of 14 NAC Genes in Populus Using a Combination of 3'-RACE and High-Throughput Sequencing.
Wang H, Wang M, Cheng Q., Molecules 23(3), 2018
PMID: 29518015
A Genetic Screen Identifies PRP18a, a Putative Second Step Splicing Factor Important for Alternative Splicing and a Normal Phenotype in Arabidopsis thaliana.
Kanno T, Lin WD, Chang CL, Matzke M, Matzke AJM., G3 (Bethesda) 8(4), 2018
PMID: 29487188
Thermopriming triggers splicing memory in Arabidopsis.
Ling Y, Serrano N, Gao G, Atia M, Mokhtar M, Woo YH, Bazin J, Veluchamy A, Benhamed M, Crespi M, Gehring C, Reddy ASN, Mahfouz MM., J Exp Bot 69(10), 2018
PMID: 29474581
Comparative analysis of transcriptome in two wheat genotypes with contrasting levels of drought tolerance.
Kumar J, Gunapati S, Kianian SF, Singh SP., Protoplasma 255(5), 2018
PMID: 29651660
Global spatial analysis of Arabidopsis natural variants implicates 5'UTR splicing of LATE ELONGATED HYPOCOTYL in responses to temperature.
James AB, Sullivan S, Nimmo HG., Plant Cell Environ 41(7), 2018
PMID: 29520807
How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).
James AB, Calixto CPG, Tzioutziou NA, Guo W, Zhang R, Simpson CG, Jiang W, Nimmo GA, Brown JWS, Nimmo HG., Plant Cell Environ 41(7), 2018
PMID: 29532482
Characterization and alternative splicing profiles of lipoxygenase gene family in tea plant (Camellia sinensis).
Zhu J, Wang X, Guo L, Xu Q, Zhao S, Li F, Yan X, Liu S, Wei C., Plant Cell Physiol (), 2018
PMID: 29726968
The cyclin-dependent kinase G group defines a thermo-sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU2AF65A.
Cavallari N, Nibau C, Fuchs A, Dadarou D, Barta A, Doonan JH., Plant J 94(6), 2018
PMID: 29602264
Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome.
Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, Panter PE, Knight H, Nimmo HG, Zhang R, Brown JWS., Plant Cell 30(7), 2018
PMID: 29764987
Alternative Splicing and Cross-Talk with Light Signaling.
Cheng YL, Tu SL., Plant Cell Physiol 59(6), 2018
PMID: 29727006
Transcriptome analysis of two contrasting rice cultivars during alkaline stress.
Li N, Liu H, Sun J, Zheng H, Wang J, Yang L, Zhao H, Zou D., Sci Rep 8(1), 2018
PMID: 29941956
Genome-Wide Association Analyses Reveal the Importance of Alternative Splicing in Diversifying Gene Function and Regulating Phenotypic Variation in Maize.
Chen Q, Han Y, Liu H, Wang X, Sun J, Zhao B, Li W, Tian J, Liang Y, Yan J, Yang X, Tian F., Plant Cell 30(7), 2018
PMID: 29967286
Transcriptome analysis of alternative splicing in peanut (Arachis hypogaea L.).
Ruan J, Guo F, Wang Y, Li X, Wan S, Shan L, Peng Z., BMC Plant Biol 18(1), 2018
PMID: 29973157
Increased Alternative Splicing as a Host Response to Edwardsiella ictaluri Infection in Catfish.
Tan S, Wang W, Zhong X, Tian C, Niu D, Bao L, Zhou T, Jin Y, Yang Y, Yuan Z, Gao D, Dunham R, Liu Z., Mar Biotechnol (NY) 20(6), 2018
PMID: 30014301
Splice-Aware Multiple Sequence Alignment of Protein Isoforms.
Nord A, Carey K, Hornbeck P, Wheeler T., ACM BCB 2018(), 2018
PMID: 31080963
Alternative Splicing as a Regulator of Early Plant Development.
Szakonyi D, Duque P., Front Plant Sci 9(), 2018
PMID: 30158945
A Two-Headed Monster to Avert Disaster: HBS1/SKI7 Is Alternatively Spliced to Build Eukaryotic RNA Surveillance Complexes.
Brunkard JO, Baker B., Front Plant Sci 9(), 2018
PMID: 30258456
Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (Oryza sativa).
Dong C, He F, Berkowitz O, Liu J, Cao P, Tang M, Shi H, Wang W, Li Q, Shen Z, Whelan J, Zheng L., Plant Cell 30(10), 2018
PMID: 30254029
Manipulating mRNA splicing by base editing in plants.
Xue C, Zhang H, Lin Q, Fan R, Gao C., Sci China Life Sci 61(11), 2018
PMID: 30267262
Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis).
Zhao H, Gao Z, Wang L, Wang J, Wang S, Fei B, Chen C, Shi C, Liu X, Zhang H, Lou Y, Chen L, Sun H, Zhou X, Wang S, Zhang C, Xu H, Li L, Yang Y, Wei Y, Yang W, Gao Q, Yang H, Zhao S, Jiang Z., Gigascience 7(10), 2018
PMID: 30202850
PRP4KA, a Putative Spliceosomal Protein Kinase, Is Important for Alternative Splicing and Development in Arabidopsis thaliana.
Kanno T, Venhuizen P, Wen TN, Lin WD, Chiou P, Kalyna M, Matzke AJM, Matzke M., Genetics 210(4), 2018
PMID: 30297453
Landscape of alternative splicing in Capra_hircus.
Xu T, Xu F, Gu L, Rong G, Li M, Qiao F, Shi L, Wang D, Xia W, Xun W, Cao T, Liu Y, Lin Z, Zhou H., Sci Rep 8(1), 2018
PMID: 30310084
Global dissection of alternative splicing uncovers transcriptional diversity in tissues and associates with the flavonoid pathway in tea plant (Camellia sinensis).
Zhu J, Wang X, Xu Q, Zhao S, Tai Y, Wei C., BMC Plant Biol 18(1), 2018
PMID: 30400863
Comprehensive evaluation of RNA-seq analysis pipelines in diploid and polyploid species.
Payá-Milans M, Olmstead JW, Nunez G, Rinehart TA, Staton M., Gigascience 7(12), 2018
PMID: 30418578
Beyond Transcription: Fine-Tuning of Circadian Timekeeping by Post-Transcriptional Regulation.
Mateos JL, de Leone MJ, Torchio J, Reichel M, Staiger D., Genes (Basel) 9(12), 2018
PMID: 30544736
Genome-wide identification and characterization of gene family for RWP-RK transcription factors in wheat (Triticum aestivum L.).
Kumar A, Batra R, Gahlaut V, Gautam T, Kumar S, Sharma M, Tyagi S, Singh KP, Balyan HS, Pandey R, Gupta PK., PLoS One 13(12), 2018
PMID: 30540790
Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells.
Li JR, Liu CC, Sun CH, Chen YT., BMC Genomics 19(1), 2018
PMID: 30587128
Plant architecture and grain yield are regulated by the novel DHHC-type zinc finger protein genes in rice (Oryza sativa L.).
Zhou B, Lin JZ, Peng D, Yang YZ, Guo M, Tang DY, Tan X, Liu XM., Plant Sci 254(), 2017
PMID: 27964781
High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants.
Brown JW, Calixto CP, Zhang R., New Phytol 213(2), 2017
PMID: 27659901
Roles of pre-mRNA splicing and polyadenylation in plant development.
Deng X, Cao X., Curr Opin Plant Biol 35(), 2017
PMID: 27866125
Alternative splicing provides a proactive mechanism for the diurnal CONSTANS dynamics in Arabidopsis photoperiodic flowering.
Gil KE, Park MJ, Lee HJ, Park YJ, Han SH, Kwon YJ, Seo PJ, Jung JH, Park CM., Plant J 89(1), 2017
PMID: 27607358
Plant snRNP Biogenesis: A Perspective from the Nucleolus and Cajal Bodies.
Ohtani M., Front Plant Sci 8(), 2017
PMID: 29354141
Integrating Omics and Alternative Splicing Reveals Insights into Grape Response to High Temperature.
Jiang J, Liu X, Liu C, Liu G, Li S, Wang L., Plant Physiol 173(2), 2017
PMID: 28049741
Pre-mRNA splicing repression triggers abiotic stress signaling in plants.
Ling Y, Alshareef S, Butt H, Lozano-Juste J, Li L, Galal AA, Moustafa A, Momin AA, Tashkandi M, Richardson DN, Fujii H, Arold S, Rodriguez PL, Duque P, Mahfouz MM., Plant J 89(2), 2017
PMID: 27664942
Regulation of FT splicing by an endogenous cue in temperate grasses.
Qin Z, Wu J, Geng S, Feng N, Chen F, Kong X, Song G, Chen K, Li A, Mao L, Wu L., Nat Commun 8(), 2017
PMID: 28145403
An event of alternative splicing affects the expression of the NTRC gene, encoding NADPH-thioredoxin reductase C, in seed plants.
Nájera VA, González MC, Pérez-Ruiz JM, Cejudo FJ., Plant Sci 258(), 2017
PMID: 28330560
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
Cheng CY, Krishnakumar V, Chan AP, Thibaud-Nissen F, Schobel S, Town CD., Plant J 89(4), 2017
PMID: 27862469
The Evolutionary Relationship between Alternative Splicing and Gene Duplication.
Iñiguez LP, Hernández G., Front Genet 8(), 2017
PMID: 28261262
Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants.
Shang X, Cao Y, Ma L., Int J Mol Sci 18(2), 2017
PMID: 28230724
STABILIZED1 Modulates Pre-mRNA Splicing for Thermotolerance.
Kim GD, Cho YH, Lee BH, Yoo SD., Plant Physiol 173(4), 2017
PMID: 28223317
Transcriptome Analysis of Flowering Time Genes under Drought Stress in Maize Leaves.
Song K, Kim HC, Shin S, Kim KH, Moon JC, Kim JY, Lee BM., Front Plant Sci 8(), 2017
PMID: 28298916
Response of Gene Expression and Alternative Splicing to Distinct Growth Environments in Tomato.
Wang G, Weng L, Li M, Xiao H., Int J Mol Sci 18(3), 2017
PMID: 28257093
RBM25 Mediates Abiotic Responses in Plants.
Cheng C, Wang Z, Yuan B, Li X., Front Plant Sci 8(), 2017
PMID: 28344583
New insights into the operative network of FaEO, an enone oxidoreductase from Fragaria x ananassa Duch.
Collu G, Farci D, Esposito F, Pintus F, Kirkpatrick J, Piano D., Plant Mol Biol 94(1-2), 2017
PMID: 28283921
Herboxidiene triggers splicing repression and abiotic stress responses in plants.
AlShareef S, Ling Y, Butt H, Mariappan KG, Benhamed M, Mahfouz MM., BMC Genomics 18(1), 2017
PMID: 28347276
Alternative splicing in tomato pollen in response to heat stress.
Keller M, Hu Y, Mesihovic A, Fragkostefanakis S, Schleiff E, Simm S., DNA Res 24(2), 2017
PMID: 28025318
A genetic screen implicates a CWC16/Yju2/CCDC130 protein and SMU1 in alternative splicing in Arabidopsis thaliana.
Kanno T, Lin WD, Fu JL, Matzke AJM, Matzke M., RNA 23(7), 2017
PMID: 28373290
Characterization and functional analysis of four HYH splicing variants in Arabidopsis hypocotyl elongation.
Li C, Zheng L, Zhang J, Lv Y, Liu J, Wang X, Palfalvi G, Wang G, Zhang Y., Gene 619(), 2017
PMID: 28389360
A Proteome Translocation Response to Complex Desert Stress Environments in Perennial Phragmites Sympatric Ecotypes with Contrasting Water Availability.
Li L, Chen X, Shi L, Wang C, Fu B, Qiu T, Cui S., Front Plant Sci 8(), 2017
PMID: 28450873
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.
Zhang R, Calixto CPG, Marquez Y, Venhuizen P, Tzioutziou NA, Guo W, Spensley M, Entizne JC, Lewandowska D, Ten Have S, Frei Dit Frey N, Hirt H, James AB, Nimmo HG, Barta A, Kalyna M, Brown JWS., Nucleic Acids Res 45(9), 2017
PMID: 28402429
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.
Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trösch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD., Genome Res 27(5), 2017
PMID: 28420692
A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize.
Mei W, Liu S, Schnable JC, Yeh CT, Springer NM, Schnable PS, Barbazuk WB., Front Plant Sci 8(), 2017
PMID: 28539927
Genome-Wide Transcriptome Analysis Reveals Extensive Alternative Splicing Events in the Protoscoleces of Echinococcus granulosus and Echinococcus multilocularis.
Liu S, Zhou X, Hao L, Piao X, Hou N, Chen Q., Front Microbiol 8(), 2017
PMID: 28588571
Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants.
Pajoro A, Severing E, Angenent GC, Immink RGH., Genome Biol 18(1), 2017
PMID: 28566089
Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens.
Fesenko I, Khazigaleeva R, Kirov I, Kniazev A, Glushenko O, Babalyan K, Arapidi G, Shashkova T, Butenko I, Zgoda V, Anufrieva K, Seredina A, Filippova A, Govorun V., Sci Rep 7(1), 2017
PMID: 28578384
RNA structure, binding, and coordination in Arabidopsis.
Foley SW, Kramer MC, Gregory BD., Wiley Interdiscip Rev RNA 8(5), 2017
PMID: 28660659
Environment-dependent regulation of spliceosome activity by the LSM2-8 complex in Arabidopsis.
Carrasco-López C, Hernández-Verdeja T, Perea-Resa C, Abia D, Catalá R, Salinas J., Nucleic Acids Res 45(12), 2017
PMID: 28482101
Evolutionarily Conserved Alternative Splicing Across Monocots.
Mei W, Boatwright L, Feng G, Schnable JC, Barbazuk WB., Genetics 207(2), 2017
PMID: 28839042
Domestication reduces alternative splicing expression variations in sorghum.
Ranwez V, Serra A, Pot D, Chantret N., PLoS One 12(9), 2017
PMID: 28886042
Alternative splicing complexity contributes to genetic improvement of drought resistance in the rice maintainer HuHan2B.
Wei H, Lou Q, Xu K, Yan M, Xia H, Ma X, Yu X, Luo L., Sci Rep 7(1), 2017
PMID: 28916800
Multilevel Regulation of Abiotic Stress Responses in Plants.
Haak DC, Fukao T, Grene R, Hua Z, Ivanov R, Perrella G, Li S., Front Plant Sci 8(), 2017
PMID: 29033955
A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a.
Kanno T, Lin WD, Fu JL, Chang CL, Matzke AJM, Matzke M., Genetics 207(4), 2017
PMID: 28971960
Cyclic Nucleotide Monophosphates and Their Cyclases in Plant Signaling.
Gehring C, Turek IS., Front Plant Sci 8(), 2017
PMID: 29046682
Genome-wide expression analysis of salt-stressed diploid and autotetraploid Paulownia tomentosa.
Zhao Z, Li Y, Liu H, Zhai X, Deng M, Dong Y, Fan G., PLoS One 12(10), 2017
PMID: 29049296
Chicken Toes-Like Leaf and Petalody Flower (CTP) is a novel regulator that controls leaf and flower development in soybean.
Zhao J, Chen L, Zhao T, Gai J., J Exp Bot 68(20), 2017
PMID: 29077868
Regulation of flowering time: a splicy business.
Melzer R., J Exp Bot 68(18), 2017
PMID: 29106624
iTRAQ-based quantitative proteomic analysis in vernalization-treated faba bean (Vicia faba L.).
Cao YY, Bian XC, Chen MX, Xia LR, Zhang J, Zhu FY, Wu CF., PLoS One 12(11), 2017
PMID: 29121109
Genome-wide characterization of differential transcript usage in Arabidopsis thaliana.
Vaneechoutte D, Estrada AR, Lin YC, Loraine AE, Vandepoele K., Plant J 92(6), 2017
PMID: 29031026
Living Organisms Author Their Read-Write Genomes in Evolution.
Shapiro JA., Biology (Basel) 6(4), 2017
PMID: 29211049
Genome-Wide Analysis of Alternative Splicing during Development and Drought Stress in Maize.
Thatcher SR, Danilevskaya ON, Meng X, Beatty M, Zastrow-Hayes G, Harris C, Van Allen B, Habben J, Li B., Plant Physiol 170(1), 2016
PMID: 26582726
Transcriptome Survey of the Contribution of Alternative Splicing to Proteome Diversity in Arabidopsis thaliana.
Yu H, Tian C, Yu Y, Jiao Y., Mol Plant 9(5), 2016
PMID: 26742955
Heat Stress Regulates the Expression of Genes at Transcriptional and Post-Transcriptional Levels, Revealed by RNA-seq in Brachypodium distachyon.
Chen S, Li H., Front Plant Sci 7(), 2016
PMID: 28119730
Tissue-specific expression, developmentally and spatially regulated alternative splicing, and protein subcellular localization of OsLpa rice.
Lu HP, Pang WQ, Li WX, Tan YY, Wang Q, Zhao HJ, Shu QY., J Zhejiang Univ Sci B 17(2), 2016
PMID: 26834011
Genetic regulation of salt stress tolerance revealed by RNA-Seq in cotton diploid wild species, Gossypium davidsonii.
Zhang F, Zhu G, Du L, Shang X, Cheng C, Yang B, Hu Y, Cai C, Guo W., Sci Rep 6(), 2016
PMID: 26838812
Small RNAs: essential regulators of gene expression and defenses against environmental stresses in plants.
Wang HL, Chekanova JA., Wiley Interdiscip Rev RNA 7(3), 2016
PMID: 26924473
Involvement of Alternative Splicing in Barley Seed Germination.
Zhang Q, Zhang X, Wang S, Tan C, Zhou G, Li C., PLoS One 11(3), 2016
PMID: 27031341
Alternative Splicing of Rice WRKY62 and WRKY76 Transcription Factor Genes in Pathogen Defense.
Liu J, Chen X, Liang X, Zhou X, Yang F, Liu J, He SY, Guo Z., Plant Physiol 171(2), 2016
PMID: 27208272
BRR2a Affects Flowering Time via FLC Splicing.
Mahrez W, Shin J, Muñoz-Viana R, Figueiredo DD, Trejo-Arellano MS, Exner V, Siretskiy A, Gruissem W, Köhler C, Hennig L., PLoS Genet 12(4), 2016
PMID: 27100965
The SNW Domain of SKIP Is Required for Its Integration into the Spliceosome and Its Interaction with the Paf1 Complex in Arabidopsis.
Li Y, Xia C, Feng J, Yang D, Wu F, Cao Y, Li L, Ma L., Mol Plant 9(7), 2016
PMID: 27130079
Genome-wide analysis of shoot growth-associated alternative splicing in moso bamboo.
Li L, Hu T, Li X, Mu S, Cheng Z, Ge W, Gao J., Mol Genet Genomics 291(4), 2016
PMID: 27170010
Reduction of GIGANTEA expression in transgenic Brassica rapa enhances salt tolerance.
Kim JA, Jung HE, Hong JK, Hermand V, Robertson McClung C, Lee YH, Kim JY, Lee SI, Jeong MJ, Kim J, Yun D, Kim W., Plant Cell Rep 35(9), 2016
PMID: 27295265
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.
Wang B, Tseng E, Regulski M, Clark TA, Hon T, Jiao Y, Lu Z, Olson A, Stein JC, Ware D., Nat Commun 7(), 2016
PMID: 27339440
The OsCYP19-4 Gene Is Expressed as Multiple Alternatively Spliced Transcripts Encoding Isoforms with Distinct Cellular Localizations and PPIase Activities under Cold Stress.
Lee A, Lee SS, Jung WY, Park HJ, Lim BR, Kim HS, Ahn JC, Cho HS., Int J Mol Sci 17(7), 2016
PMID: 27447607
PcircRNA_finder: a software for circRNA prediction in plants.
Chen L, Yu Y, Zhang X, Liu C, Ye C, Fan L., Bioinformatics 32(22), 2016
PMID: 27493192
Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.).
Martin K, Singh J, Hill JH, Whitham SA, Cannon SB., BMC Genomics 17(1), 2016
PMID: 27515794
The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing.
Marshall CM, Tartaglio V, Duarte M, Harmon FG., Plant Cell 28(10), 2016
PMID: 27624757
A non canonical subtilase attenuates the transcriptional activation of defence responses in Arabidopsis thaliana.
Serrano I, Buscaill P, Audran C, Pouzet C, Jauneau A, Rivas S., Elife 5(), 2016
PMID: 27685353
A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea.
Clevenger J, Chu Y, Scheffler B, Ozias-Akins P., Front Plant Sci 7(), 2016
PMID: 27746793
Alternative splicing of the receptor-like kinase Nt-Sd-RLK in tobacco cells responding to lipopolysaccharides: suggestive of a role in pathogen surveillance and perception?
Sanabria NM, Dubery IA., FEBS Lett 590(20), 2016
PMID: 27657914
Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture.
Clauw P, Coppens F, Korte A, Herman D, Slabbinck B, Dhondt S, Van Daele T, De Milde L, Vermeersch M, Maleux K, Maere S, Gonzalez N, Inzé D., Plant Cell 28(10), 2016
PMID: 27729396
Carotenogenesis Is Regulated by 5'UTR-Mediated Translation of Phytoene Synthase Splice Variants.
Álvarez D, Voß B, Maass D, Wüst F, Schaub P, Beyer P, Welsch R., Plant Physiol 172(4), 2016
PMID: 27729470
Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.
Hartmann L, Drewe-Boß P, Wießner T, Wagner G, Geue S, Lee HC, Obermüller DM, Kahles A, Behr J, Sinz FH, Rätsch G, Wachter A., Plant Cell 28(11), 2016
PMID: 27803310
Metabolic Signaling Regulates Alternative Splicing during Photomorphogenesis.
Farquharson KL., Plant Cell 28(11), 2016
PMID: 27956583
Meeting report: processing, translation, decay - three ways to keep RNA sizzling.
von Arnim AG, Hellmann HA., Plant Cell Environ 39(12), 2016
PMID: 27859406
The developmental transcriptome atlas of the biofuel crop Camelina sativa.
Kagale S, Nixon J, Khedikar Y, Pasha A, Provart NJ, Clarke WE, Bollina V, Robinson SJ, Coutu C, Hegedus DD, Sharpe AG, Parkin IA., Plant J 88(5), 2016
PMID: 27513981
Alternative Splicing within and between Drosophila Species, Sexes, Tissues, and Developmental Stages.
Gibilisco L, Zhou Q, Mahajan S, Bachtrog D., PLoS Genet 12(12), 2016
PMID: 27935948
Alternative Splicing of Barley Clock Genes in Response to Low Temperature.
Calixto CP, Simpson CG, Waugh R, Brown JW., PLoS One 11(12), 2016
PMID: 27959947
SWATH-MS Quantitative Analysis of Proteins in the Rice Inferior and Superior Spikelets during Grain Filling.
Zhu FY, Chen MX, Su YW, Xu X, Ye NH, Cao YY, Lin S, Liu TY, Li HX, Wang GQ, Jin Y, Gu YH, Chan WL, Lo C, Peng X, Zhu G, Zhang J., Front Plant Sci 7(), 2016
PMID: 28066479
Optimizing Rubisco and its regulation for greater resource use efficiency.
Carmo-Silva E, Carmo-Silva E, Scales JC, Madgwick PJ, Parry MA., Plant Cell Environ 38(9), 2015
PMID: 25123951
Stress-induced endogenous siRNAs targeting regulatory intron sequences in Brachypodium.
Wang HL, Dinwiddie BL, Lee H, Chekanova JA., RNA 21(2), 2015
PMID: 25480817
Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation.
Shin KH, Yang SH, Lee JY, Lim CW, Lee SC, Brown JW, Kim SH., Plant Cell Rep 34(3), 2015
PMID: 25510357
Differential gene expression and alternative splicing between diploid and tetraploid watermelon.
Saminathan T, Nimmakayala P, Manohar S, Malkaram S, Almeida A, Cantrell R, Tomason Y, Abburi L, Rahman MA, Vajja VG, Khachane A, Kumar B, Rajasimha HK, Levi A, Wehner T, Reddy UK., J Exp Bot 66(5), 2015
PMID: 25520388
Genomic architecture and functional relationships of intronless, constitutively- and alternatively-spliced genes in Brachypodium distachyon.
Mandadi KK, Scholthof KB., Plant Signal Behav 10(8), 2015
PMID: 26156297
Characterization of SCL33 splicing patterns during diverse virus infections in Brachypodium distachyon.
Mandadi KK, Pyle JD, Scholthof KB., Plant Signal Behav 10(8), 2015
PMID: 26179847
Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis.
Filichkin SA, Cumbie JS, Dharmawardhana P, Jaiswal P, Chang JH, Palusa SG, Reddy AS, Megraw M, Mockler TC., Mol Plant 8(2), 2015
PMID: 25680774
Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon.
Mandadi KK, Scholthof KB., Plant Cell 27(1), 2015
PMID: 25634987
Sick as a… grass? Viral infection causes massive changes in alternative splicing in Brachypodium distachyon.
Mach J., Plant Cell 27(1), 2015
PMID: 25634986
Post-transcriptional and post-translational regulations of drought and heat response in plants: a spider's web of mechanisms.
Guerra D, Crosatti C, Khoshro HH, Mastrangelo AM, Mica E, Mazzucotelli E., Front Plant Sci 6(), 2015
PMID: 25717333
An Rtf2 Domain-Containing Protein Influences Pre-mRNA Splicing and Is Essential for Embryonic Development in Arabidopsis thaliana.
Sasaki T, Kanno T, Liang SC, Chen PY, Liao WW, Lin WD, Matzke AJ, Matzke M., Genetics 200(2), 2015
PMID: 25819795
Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress.
Filichkin S, Priest HD, Megraw M, Mockler TC., Curr Opin Plant Biol 24(), 2015
PMID: 25835141
Rice cyclophilin OsCYP18-2 is translocated to the nucleus by an interaction with SKIP and enhances drought tolerance in rice and Arabidopsis.
Lee SS, Park HJ, Yoon DH, Kim BG, Ahn JC, Luan S, Cho HS., Plant Cell Environ 38(10), 2015
PMID: 25847193
Mechanism of cytoplasmic mRNA translation.
Browning KS, Bailey-Serres J., Arabidopsis Book 13(), 2015
PMID: 26019692
RNA processing in auxin and cytokinin pathways.
Hrtyan M, Šliková E, Hejátko J, Růžička K., J Exp Bot 66(16), 2015
PMID: 25922481
A Host KH RNA-Binding Protein Is a Susceptibility Factor Targeted by an RXLR Effector to Promote Late Blight Disease.
Wang X, Boevink P, McLellan H, Armstrong M, Bukharova T, Qin Z, Birch PR., Mol Plant 8(9), 2015
PMID: 25936676
Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity.
Marquez Y, Höpfler M, Ayatollahi Z, Barta A, Kalyna M., Genome Res 25(7), 2015
PMID: 25934563
Comparative transcriptomics uncovers alternative splicing changes and signatures of selection from maize improvement.
Huang J, Gao Y, Jia H, Liu L, Zhang D, Zhang Z., BMC Genomics 16(), 2015
PMID: 25952680
Wheat Stripe Rust Resistance Protein WKS1 Reduces the Ability of the Thylakoid-Associated Ascorbate Peroxidase to Detoxify Reactive Oxygen Species.
Gou JY, Li K, Wu K, Wang X, Lin H, Cantu D, Uauy C, Dobon-Alonso A, Midorikawa T, Inoue K, Sánchez J, Fu D, Blechl A, Wallington E, Fahima T, Meeta M, Epstein L, Dubcovsky J., Plant Cell 27(6), 2015
PMID: 25991734
Intronic promoter-mediated feedback loop regulates bean PvSR2 gene expression.
Yang W, Bei X, Liu M, Qi X., Biochem Biophys Res Commun 463(4), 2015
PMID: 26079876
AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
Zhang R, Calixto CP, Tzioutziou NA, James AB, Simpson CG, Guo W, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JW., New Phytol 208(1), 2015
PMID: 26111100
Enter exitrons.
Staiger D, Simpson GG., Genome Biol 16(), 2015
PMID: 26149172
Role of alternative pre-mRNA splicing in temperature signaling.
Capovilla G, Pajoro A, Immink RG, Schmid M., Curr Opin Plant Biol 27(), 2015
PMID: 26190743
Environmental Stress and Pre-mRNA Splicing.
Cui P, Xiong L., Mol Plant 8(9), 2015
PMID: 26205814
Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process.
Meyer K, Koester T, Staiger D., Biomolecules 5(3), 2015
PMID: 26213982
Plant Architecture: The Long and the Short of Branching in Potato.
Brewer PB., Curr Biol 25(16), 2015
PMID: 26294188
Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts.
Brown JW, Simpson CG, Marquez Y, Gadd GM, Barta A, Kalyna M., Plant Cell 27(8), 2015
PMID: 26286536
Identification of novel small ncRNAs in pollen of tomato.
Bokszczanin KL, Krezdorn N, Fragkostefanakis S, Müller S, Rycak L, Chen Y, Hoffmeier K, Kreutz J, Paupière MJ, Chaturvedi P, Iannacone R, Müller F, Bostan H, Chiusano ML, Scharf KD, Rotter B, Schleiff E, Winter P, SPOT-ITN Consortium (Solanaceae Pollen Thermotolerance Initial Training Network Consortium)., BMC Genomics 16(), 2015
PMID: 26385469
Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops.
Min XJ, Powell B, Braessler J, Meinken J, Yu F, Sablok G., BMC Genomics 16(), 2015
PMID: 26391769
ABA signalling is fine-tuned by antagonistic HAB1 variants.
Wang Z, Ji H, Yuan B, Wang S, Su C, Yao B, Zhao H, Li X., Nat Commun 6(), 2015
PMID: 26419884
Unique Aspects of Plant Nonsense-Mediated mRNA Decay.
Shaul O., Trends Plant Sci 20(11), 2015
PMID: 26442679
Identification of alternative splicing events by RNA sequencing in early growth tomato fruits.
Sun Y, Xiao H., BMC Genomics 16(), 2015
PMID: 26573826
Transcriptome-Wide Identification of RNA Targets of Arabidopsis SERINE/ARGININE-RICH45 Uncovers the Unexpected Roles of This RNA Binding Protein in RNA Processing.
Xing D, Wang Y, Hamilton M, Ben-Hur A, Reddy AS., Plant Cell 27(12), 2015
PMID: 26603559
Seed Dormancy in Arabidopsis Requires Self-Binding Ability of DOG1 Protein and the Presence of Multiple Isoforms Generated by Alternative Splicing.
Nakabayashi K, Bartsch M, Ding J, Soppe WJ., PLoS Genet 11(12), 2015
PMID: 26684465
RNA-Seq Analysis of Rice Roots Reveals the Involvement of Post-Transcriptional Regulation in Response to Cadmium Stress.
He F, Liu Q, Zheng L, Cui Y, Shen Z, Zheng L., Front Plant Sci 6(), 2015
PMID: 26734039
Let there be light: regulation of gene expression in plants.
Petrillo E, Godoy Herz MA, Barta A, Kalyna M, Kornblihtt AR., RNA Biol 11(10), 2014
PMID: 25590224
Alternative splicing during Arabidopsis flower development results in constitutive and stage-regulated isoforms.
Wang H, You C, Chang F, Wang Y, Wang L, Qi J, Ma H., Front Genet 5(), 2014
PMID: 24575124
Interaction of light and temperature signalling.
Franklin KA, Toledo-Ortiz G, Pyott DE, Halliday KJ., J Exp Bot 65(11), 2014
PMID: 24569036
Global dissection of alternative splicing in paleopolyploid soybean.
Shen Y, Zhou Z, Wang Z, Li W, Fang C, Wu M, Ma Y, Liu T, Kong LA, Peng DL, Tian Z., Plant Cell 26(3), 2014
PMID: 24681622
Mechanism of salinity tolerance in plants: physiological, biochemical, and molecular characterization.
Gupta B, Huang B., Int J Genomics 2014(), 2014
PMID: 24804192
Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially.
Simpson CG, Lewandowska D, Liney M, Davidson D, Chapman S, Fuller J, McNicol J, Shaw P, Brown JW., New Phytol 203(2), 2014
PMID: 24749484
Post-transcriptional regulation in root development.
Stauffer E, Maizel A., Wiley Interdiscip Rev RNA 5(5), 2014
PMID: 24827552
Intron retention in the 5'UTR of the novel ZIF2 transporter enhances translation to promote zinc tolerance in arabidopsis.
Remy E, Cabrito TR, Batista RA, Hussein MA, Teixeira MC, Athanasiadis A, Sá-Correia I, Duque P., PLoS Genet 10(5), 2014
PMID: 24832541
The splicing fate of plant SPO11 genes.
Sprink T, Hartung F., Front Plant Sci 5(), 2014
PMID: 25018755
Pea p68, a DEAD-box helicase, provides salinity stress tolerance in transgenic tobacco by reducing oxidative stress and improving photosynthesis machinery.
Tuteja N, Banu MS, Huda KM, Gill SS, Jain P, Pham XH, Tuteja R., PLoS One 9(5), 2014
PMID: 24879307
A new alternative in plant retrograde signaling.
Jung HS, Mockler TC., Genome Biol 15(5), 2014
PMID: 25001637
Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis.
Ding F, Cui P, Wang Z, Zhang S, Ali S, Xiong L., BMC Genomics 15(), 2014
PMID: 24897929
Alternative splicing in plant immunity.
Yang S, Tang F, Zhu H., Int J Mol Sci 15(6), 2014
PMID: 24918296
Emerging functions of alternative splicing coupled with nonsense-mediated decay.
Hamid FM, Makeyev EV., Biochem Soc Trans 42(4), 2014
PMID: 25110020
The conserved PFT1 tandem repeat is crucial for proper flowering in Arabidopsis thaliana.
Rival P, Press MO, Bale J, Grancharova T, Undurraga SF, Queitsch C., Genetics 198(2), 2014
PMID: 25116137
Conservation and functional influence of alternative splicing in wood formation of Populus and Eucalyptus.
Xu P, Kong Y, Song D, Huang C, Li X, Li L., BMC Genomics 15(), 2014
PMID: 25209012
Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation.
Thatcher SR, Zhou W, Leonard A, Wang BB, Beatty M, Zastrow-Hayes G, Zhao X, Baumgarten A, Li B., Plant Cell 26(9), 2014
PMID: 25248552
Transcriptome sequencing and analysis of leaf tissue of Avicennia marina using the Illumina platform.
Huang J, Lu X, Zhang W, Huang R, Chen S, Zheng Y., PLoS One 9(9), 2014
PMID: 25265387
Abscisic acid (ABA) regulation of Arabidopsis SR protein gene expression.
Cruz TM, Carvalho RF, Richardson DN, Duque P., Int J Mol Sci 15(10), 2014
PMID: 25268622
Insights into the evolution and diversification of the AT-hook Motif Nuclear Localized gene family in land plants.
Zhao J, Favero DS, Qiu J, Roalson EH, Neff MM., BMC Plant Biol 14(), 2014
PMID: 25311531
Transcriptome analysis indicates considerable divergence in alternative splicing between duplicated genes in Arabidopsis thaliana.
Tack DC, Pitchers WR, Adams KL., Genetics 198(4), 2014
PMID: 25326238
Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida.
Thorpe P, Mantelin S, Cock PJ, Blok VC, Coke MC, Eves-van den Akker S, Guzeeva E, Lilley CJ, Smant G, Reid AJ, Wright KM, Urwin PE, Jones JT., BMC Genomics 15(), 2014
PMID: 25342461
Transcriptional and post-transcriptional regulation of the jasmonate signalling pathway in response to abiotic and harvesting stress in Hevea brasiliensis.
Pirrello J, Leclercq J, Dessailly F, Rio M, Piyatrakul P, Kuswanhadi K, Tang C, Montoro P., BMC Plant Biol 14(), 2014
PMID: 25443311
Complexity of the alternative splicing landscape in plants.
Reddy AS, Marquez Y, Kalyna M, Barta A., Plant Cell 25(10), 2013
PMID: 24179125
The plant cell reviews alternative splicing.
Eckardt NA., Plant Cell 25(10), 2013
PMID: 24179133

164 References

Daten bereitgestellt von Europe PubMed Central.

Cancer-associated regulation of alternative splicing.
Venables JP, Klinck R, Koh C, Gervais-Bird J, Bramard A, Inkel L, Durand M, Couture S, Froehlich U, Lapointe E, Lucier JF, Thibault P, Rancourt C, Tremblay K, Prinos P, Chabot B, Elela SA., Nat. Struct. Mol. Biol. 16(6), 2009
PMID: 19448617
Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development.
Chung T, Wang D, Kim CS, Yadegari R, Larkins BA., Plant Physiol. 151(3), 2009
PMID: 19734266
Network properties of robust immunity in plants.
Tsuda K, Sato M, Stoddard T, Glazebrook J, Katagiri F., PLoS Genet. 5(12), 2009
PMID: 20011122
A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8.
Schmidt F, Marnef A, Cheung MK, Wilson I, Hancock J, Staiger D, Ladomery M., Mol. Biol. Rep. 37(2), 2009
PMID: 19672695
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.
Raczynska KD, Simpson CG, Ciesiolka A, Szewc L, Lewandowska D, McNicol J, Szweykowska-Kulinska Z, Brown JW, Jarmolowski A., Nucleic Acids Res. 38(1), 2009
PMID: 19864257
Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC., Genome Res. 20(1), 2009
PMID: 19858364
Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis.
Yuan Y, Chung JD, Fu X, Johnson VE, Ranjan P, Booth SL, Harding SA, Tsai CJ., Proc. Natl. Acad. Sci. U.S.A. 106(51), 2009
PMID: 19996170
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays.
Hazen SP, Naef F, Quisel T, Gendron JM, Chen H, Ecker JR, Borevitz JO, Kay SA., Genome Biol. 10(2), 2009
PMID: 19210792
Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.
Matsukura S, Mizoi J, Yoshida T, Todaka D, Ito Y, Maruyama K, Shinozaki K, Yamaguchi-Shinozaki K., Mol. Genet. Genomics 283(2), 2010
PMID: 20049613
Alternative splicing and disease.
Tazi J, Bakkour N, Stamm S., Biochim. Biophys. Acta 1792(1), 2008
PMID: 18992329
Roles of eukaryotic Lsm proteins in the regulation of mRNA function.
Tharun S., Int Rev Cell Mol Biol 272(), 2009
PMID: 19121818
CLO/GFA1 and ATO are novel regulators of gametic cell fate in plants.
Moll C, von Lyncker L, Zimmermann S, Kagi C, Baumann N, Twell D, Grossniklaus U, Gross-Hardt R., Plant J. 56(6), 2008
PMID: 18702672
Transcriptional regulatory networks in response to abiotic stresses in Arabidopsis and grasses.
Nakashima K, Ito Y, Yamaguchi-Shinozaki K., Plant Physiol. 149(1), 2009
PMID: 19126699
The spliceosome: design principles of a dynamic RNP machine.
Wahl MC, Will CL, Luhrmann R., Cell 136(4), 2009
PMID: 19239890
GAMETOPHYTIC FACTOR 1, involved in pre-mRNA splicing, is essential for megagametogenesis and embryogenesis in Arabidopsis.
Liu M, Yuan L, Liu NY, Shi DQ, Liu J, Yang WC., J Integr Plant Biol 51(3), 2009
PMID: 19261069
The cytosolic protein response as a subcomponent of the wider heat shock response in Arabidopsis.
Sugio A, Dreos R, Aparicio F, Maule AJ., Plant Cell 21(2), 2009
PMID: 19244141
Knock-out mutations of Arabidopsis SmD3-b induce pleotropic phenotypes through altered transcript splicing.
Swaraz AM, Park YD, Hur Y., Plant Sci. 180(5), 2011
PMID: 21421416
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston V., Plant Cell 23(3), 2011
PMID: 21447789
Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism.
Seo PJ, Kim MJ, Ryu JY, Jeong EY, Park CM., Nat Commun 2(), 2011
PMID: 21556057
Semiquantitative proteomic analysis of the human spliceosome via a novel two-dimensional gel electrophoresis method.
Agafonov DE, Deckert J, Wolf E, Odenwalder P, Bessonov S, Will CL, Urlaub H, Luhrmann R., Mol. Cell. Biol. 31(13), 2011
PMID: 21536652
Spliceosome structure and function.
Will CL, Luhrmann R., Cold Spring Harb Perspect Biol 3(7), 2011
PMID: 21441581
Induction of vacuolar invertase inhibitor mRNA in potato tubers contributes to cold-induced sweetening resistance and includes spliced hybrid mRNA variants.
Brummell DA, Chen RK, Harris JC, Zhang H, Hamiaux C, Kralicek AV, McKenzie MJ., J. Exp. Bot. 62(10), 2011
PMID: 21393382
Transportin-SR is required for proper splicing of resistance genes and plant immunity.
Xu S, Zhang Z, Jing B, Gannon P, Ding J, Xu F, Li X, Zhang Y., PLoS Genet. 7(6), 2011
PMID: 21738492
LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development.
Perea-Resa C, Hernandez-Verdeja T, Lopez-Cobollo R, del Mar Castellano M, Salinas J., Plant Cell 24(12), 2012
PMID: 23221597
Alternative splicing: a pivotal step between eukaryotic transcription and translation.
Kornblihtt AR, Schor IE, Allo M, Dujardin G, Petrillo E, Munoz MJ., Nat. Rev. Mol. Cell Biol. 14(3), 2013
PMID: 23385723
MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis.
Jia F, Rock CD., Plant Mol. Biol. 81(4-5), 2013
PMID: 23341152
A DEAD box RNA helicase is critical for pre-mRNA splicing, cold-responsive gene regulation, and cold tolerance in Arabidopsis.
Guan Q, Wu J, Zhang Y, Jiang C, Liu R, Chai C, Zhu J., Plant Cell 25(1), 2013
PMID: 23371945
Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7.
Nicaise V, Joe A, Jeong BR, Korneli C, Boutrot F, Westedt I, Staiger D, Alfano JR, Zipfel C., EMBO J. 32(5), 2013
PMID: 23395902
Plant nucleotide binding site-leucine-rich repeat (NBS-LRR) genes: active guardians in host defense responses.
Marone D, Russo MA, Laido G, De Leonardis AM, Mastrangelo AM., Int J Mol Sci 14(4), 2013
PMID: 23549266
A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana.
Schmal C, Reimann P, Staiger D., PLoS Comput. Biol. 9(3), 2013
PMID: 23555221
The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis.
Zhang CJ, Zhou JX, Liu J, Ma ZY, Zhang SW, Dou K, Huang HW, Cai T, Liu R, Zhu JK, He XJ., EMBO J. 32(8), 2013
PMID: 23524848
Genome-wide landscape of alternative splicing events in Brachypodium distachyon.
Walters B, Lum G, Sablok G, Min XJ., DNA Res. 20(2), 2013
PMID: 23297300
A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis.
Remy E, Cabrito TR, Baster P, Batista RA, Teixeira MC, Friml J, Sa-Correia I, Duque P., Plant Cell 25(3), 2013
PMID: 23524662
An autoregulatory loop controlling Arabidopsis HsfA2 expression: role of heat shock-induced alternative splicing.
Liu J, Sun N, Liu M, Liu J, Du B, Wang X, Qi X., Plant Physiol. 162(1), 2013
PMID: 23503691
Features of evolutionarily conserved alternative splicing events between Brassica and Arabidopsis.
Darracq A, Adams KL., New Phytol. 199(1), 2013
PMID: 23551259
Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10.
Moreno JE, Shyu C, Campos ML, Patel LC, Chung HS, Yao J, He SY, Howe GA., Plant Physiol. 162(2), 2013
PMID: 23632853
Arabidopsis thaliana LSM proteins function in mRNA splicing and degradation.
Golisz A, Sikorski PJ, Kruszka K, Kufel J., Nucleic Acids Res. 41(12), 2013
PMID: 23620288
Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts.
Simpson CG, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol J, Barta A, Brown JW., Plant J. 53(6), 2007
PMID: 18088312
Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis.
Bove J, Kim CY, Gibson CA, Assmann SM., Plant Mol. Biol. 67(1-2), 2008
PMID: 18278441
Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.
de la Fuente van Bentem S, Anrather D, Dohnal I, Roitinger E, Csaszar E, Joore J, Buijnink J, Carreri A, Forzani C, Lorkovic ZJ, Barta A, Lecourieux D, Verhounig A, Jonak C, Hirt H., J. Proteome Res. 7(6), 2008
PMID: 18433157
Circadian clock function in Arabidopsis thaliana: time beyond transcription.
Mas P., Trends Cell Biol. 18(6), 2008
PMID: 18468438
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.
Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Ratsch G, Weigel D., Proc. Natl. Acad. Sci. U.S.A. 105(25), 2008
PMID: 18550839
Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense?
McGlincy NJ, Smith CW., Trends Biochem. Sci. 33(8), 2008
PMID: 18621535
Glycine-rich RNA-binding protein 7 affects abiotic stress responses by regulating stomata opening and closing in Arabidopsis thaliana.
Kim JS, Jung HJ, Lee HJ, Kim KA, Goh CH, Woo Y, Oh SH, Han YS, Kang H., Plant J. 55(3), 2008
PMID: 18410480
Sequencing of natural strains of Arabidopsis thaliana with short reads.
Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, Weigel D., Genome Res. 18(12), 2008
PMID: 18818371
Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.
Schoning JC, Streitner C, Meyer IM, Gao Y, Staiger D., Nucleic Acids Res. 36(22), 2008
PMID: 18987006
Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).
Kaufmann K, Muino JM, Osteras M, Farinelli L, Krajewski P, Angenent GC., Nat Protoc 5(3), 2010
PMID: 20203663
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome.
Zhang G, Guo G, Hu X, Zhang Y, Li Q, Li R, Zhuang R, Lu Z, He Z, Fang X, Chen L, Tian W, Tao Y, Kristiansen K, Zhang X, Li S, Yang H, Wang J, Wang J., Genome Res. 20(5), 2010
PMID: 20305017
Dynamic nucleocytoplasmic shuttling of an Arabidopsis SR splicing factor: role of the RNA-binding domains.
Rausin G, Tillemans V, Stankovic N, Hanikenne M, Motte P., Plant Physiol. 153(1), 2010
PMID: 20237019
The function of the NineTeen Complex (NTC) in regulating spliceosome conformations and fidelity during pre-mRNA splicing.
Hogg R, McGrail JC, O'Keefe RT., Biochem. Soc. Trans. 38(4), 2010
PMID: 20659013
The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis.
Sugliani M, Brambilla V, Clerkx EJ, Koornneef M, Soppe WJ., Plant Cell 22(6), 2010
PMID: 20525852
Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq.
Lu T, Lu G, Fan D, Zhu C, Li W, Zhao Q, Feng Q, Zhao Y, Guo Y, Li W, Huang X, Han B., Genome Res. 20(9), 2010
PMID: 20627892
The plant-specific SR45 protein negatively regulates glucose and ABA signaling during early seedling development in Arabidopsis.
Carvalho RF, Carvalho SD, Duque P., Plant Physiol. 154(2), 2010
PMID: 20699397
Global transcript profiling of transgenic plants constitutively overexpressing the RNA-binding protein AtGRP7.
Streitner C, Hennig L, Korneli C, Staiger D., BMC Plant Biol. 10(), 2010
PMID: 20946635
Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control.
Stauffer E, Westermann A, Wagner G, Wachter A., Plant J. 64(2), 2010
PMID: 20735772
Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing.
Deng X, Gu L, Liu C, Lu T, Lu F, Lu Z, Cui P, Pei Y, Wang B, Hu S, Cao X., Proc. Natl. Acad. Sci. U.S.A. 107(44), 2010
PMID: 20956294
A methyl transferase links the circadian clock to the regulation of alternative splicing.
Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG, Brown JW, Cerdan PD, Borevitz JO, Mas P, Ceriani MF, Kornblihtt AR, Yanovsky MJ., Nature 468(7320), 2010
PMID: 20962777
Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling.
Chung HS, Cooke TF, Depew CL, Patel LC, Ogawa N, Kobayashi Y, Howe GA., Plant J. 63(4), 2010
PMID: 20525008
Repair of pre-mRNA splicing: prospects for a therapy for spinal muscular atrophy.
Nlend Nlend R, Meyer K, Schumperli D., RNA Biol 7(4), 2010
PMID: 20523126
Cutting the nonsense: the degradation of PTC-containing mRNAs.
Nicholson P, Muhlemann O., Biochem. Soc. Trans. 38(6), 2010
PMID: 21118136
Two putative RNA-binding proteins function with unequal genetic redundancy in the MOS4-associated complex.
Monaghan J, Xu F, Xu S, Zhang Y, Li X., Plant Physiol. 154(4), 2010
PMID: 20943852
Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana.
Hong S, Song HR, Lutz K, Kerstetter RA, Michael TP, McClung CR., Proc. Natl. Acad. Sci. U.S.A. 107(49), 2010
PMID: 21097700
Epigenetics in alternative pre-mRNA splicing.
Luco RF, Allo M, Schor IE, Kornblihtt AR, Misteli T., Cell 144(1), 2011
PMID: 21215366
Regulation of alternative splicing by the core spliceosomal machinery.
Saltzman AL, Pan Q, Blencowe BJ., Genes Dev. 25(4), 2011
PMID: 21325135
Arabidopsis floral initiator SKB1 confers high salt tolerance by regulating transcription and pre-mRNA splicing through altering histone H4R3 and small nuclear ribonucleoprotein LSM4 methylation.
Zhang Z, Zhang S, Zhang Y, Wang X, Li D, Li Q, Yue M, Li Q, Zhang YE, Xu Y, Xue Y, Chong K, Bao S., Plant Cell 23(1), 2011
PMID: 21258002
Understanding splicing regulation through RNA splicing maps.
Witten JT, Ule J., Trends Genet. 27(3), 2011
PMID: 21232811
Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.
Gulledge AA, Roberts AD, Vora H, Patel K, Loraine AE., Am. J. Bot. 99(2), 2012
PMID: 22291167
Alternative splicing: enhancing ability to cope with stress via transcriptome plasticity.
Mastrangelo AM, Marone D, Laido G, De Leonardis AM, De Vita P., Plant Sci. 185-186(), 2011
PMID: 22325865
Arabidopsis plants having defects in nonsense-mediated mRNA decay factors UPF1, UPF2, and UPF3 show photoperiod-dependent phenotypes in development and stress responses.
Shi C, Baldwin IT, Wu J., J Integr Plant Biol 54(2), 2012
PMID: 22353561
Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor.
Nagashima Y, Mishiba K, Suzuki E, Shimada Y, Iwata Y, Koizumi N., Sci Rep 1(), 2011
PMID: 22355548
A role for nonsense-mediated mRNA decay in plants: pathogen responses are induced in Arabidopsis thaliana NMD mutants.
Rayson S, Arciga-Reyes L, Wootton L, De Torres Zabala M, Truman W, Graham N, Grant M, Davies B., PLoS ONE 7(2), 2012
PMID: 22384098
Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre.
Rasche N, Dybkov O, Schmitzova J, Akyildiz B, Fabrizio P, Luhrmann R., EMBO J. 31(6), 2012
PMID: 22246180
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol J, Dinh HQ, Barta A, Brown JW., Nucleic Acids Res. 40(6), 2011
PMID: 22127866
Alternative splicing of the auxin biosynthesis gene YUCCA4 determines its subcellular compartmentation.
Kriechbaumer V, Wang P, Hawes C, Abell BM., Plant J. 70(2), 2012
PMID: 22233288
Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes.
James AB, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JW, Nimmo HG., Plant Cell 24(3), 2012
PMID: 22408072
Gene duplication and the evolution of plant MADS-box transcription factors.
Airoldi CA, Davies B., J Genet Genomics 39(4), 2012
PMID: 22546537
Time for a nuclear meeting: protein trafficking and chromatin dynamics intersect in the plant circadian system.
Herrero E, Davis SJ., Mol Plant 5(3), 2012
PMID: 22379122
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.
Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M., Genome Res. 22(6), 2012
PMID: 22391557
Intron-mediated alternative splicing of Arabidopsis P5CS1 and its association with natural variation in proline and climate adaptation.
Kesari R, Lasky JR, Villamor JG, Des Marais DL, Chen YJ, Liu TW, Lin W, Juenger TE, Verslues PE., Proc. Natl. Acad. Sci. U.S.A. 109(23), 2012
PMID: 22615385
The cyclin L homolog MOS12 and the MOS4-associated complex are required for the proper splicing of plant resistance genes.
Xu F, Xu S, Wiermer M, Zhang Y, Li X., Plant J. 70(6), 2012
PMID: 22248079
Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response.
Riehs-Kearnan N, Gloggnitzer J, Dekrout B, Jonak C, Riha K., Nucleic Acids Res. 40(12), 2012
PMID: 22379136
A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis.
Seo PJ, Park MJ, Lim MH, Kim SG, Lee M, Baldwin IT, Park CM., Plant Cell 24(6), 2012
PMID: 22715042
The genetic basis of flowering responses to seasonal cues.
Andres F, Coupland G., Nat. Rev. Genet. 13(9), 2012
PMID: 22898651
SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis.
Wang X, Wu F, Xie Q, Wang H, Wang Y, Yue Y, Gahura O, Ma S, Liu L, Cao Y, Jiao Y, Puta F, McClung CR, Xu X, Ma L., Plant Cell 24(8), 2012
PMID: 22942380
Alternative splicing in plants--coming of age.
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JW., Trends Plant Sci. 17(10), 2012
PMID: 22743067
Novel role for a serine/arginine-rich splicing factor, AdRSZ21 in plant defense and HR-like cell death.
Kumar KR, Kirti PB., Plant Mol. Biol. 80(4-5), 2012
PMID: 22941522
Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
Windram O, Madhou P, McHattie S, Hill C, Hickman R, Cooke E, Jenkins DJ, Penfold CA, Baxter L, Breeze E, Kiddle SJ, Rhodes J, Atwell S, Kliebenstein DJ, Kim YS, Stegle O, Borgwardt K, Zhang C, Tabrett A, Legaie R, Moore J, Finkenstadt B, Wild DL, Mead A, Rand D, Beynon J, Ott S, Buchanan-Wollaston V, Denby KJ., Plant Cell 24(9), 2012
PMID: 23023172
A physical, genetic and functional sequence assembly of the barley genome.
International Barley Genome Sequencing Consortium, Mayer KF, Waugh R, Brown JW, Schulman A, Langridge P, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Close TJ, Wise RP, Stein N, Mayer KF, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ, Stein N, Ariyadasa R, Schulte D, Poursarebani N, Zhou R, Steuernagel B, Mascher M, Scholz U, Shi B, Langridge P, Madishetty K, Svensson JT, Bhat P, Moscou M, Resnik J, Close TJ, Muehlbauer GJ, Hedley P, Liu H, Morris J, Waugh R, Frenkel Z, Korol A, Berges H, Graner A, Stein N, Steuernagel B, Scholz U, Taudien S, Felder M, Groth M, Platzer M, Stein N, Steuernagel B, Scholz U, Himmelbach A, Taudien S, Felder M, Platzer M, Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Ciardo G, Ma Y, Wanamaker S, Close TJ, Stein N, Cattonaro F, Vendramin V, Scalabrin S, Radovic S, Wing R, Schulte D, Steuernagel B, Morgante M, Stein N, Waugh R, Nussbaumer T, Gundlach H, Martis M, Ariyadasa R, Poursarebani N, Steuernagel B, Scholz U, Wise RP, Poland J, Stein N, Mayer KF, Spannagl M, Pfeifer M, Gundlach H, Mayer KF, Gundlach H, Moisy C, Tanskanen J, Scalabrin S, Zuccolo A, Vendramin V, Morgante M, Schulman A, Pfeifer M, Spannagl M, Hedley P, Morris J, Russell J, Druka A, Marshall D, Bayer M, Swarbreck D, Sampath D, Ayling S, Febrer M, Caccamo M, Matsumoto T, Tanaka T, Sato K, Wise RP, Close TJ, Wannamaker S, Muehlbauer GJ, Stein N, Waugh R, Steuernagel B, Schmutzer T, Mascher M, Scholz U, Taudien S, Platzer M, Sato K, Marshall D, Bayer M, Waugh R, Stein N., Nature 491(7426), 2012
PMID: 23075845
Stress-induced alternative splicing provides a mechanism for the regulation of microRNA processing in Arabidopsis thaliana.
Yan K, Liu P, Wu CA, Yang GD, Xu R, Guo QH, Huang JG, Zheng CC., Mol. Cell 48(4), 2012
PMID: 23063528
Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects.
Jones MA, Williams BA, McNicol J, Simpson CG, Brown JW, Harmer SL., Plant Cell 24(10), 2012
PMID: 23110899
Thermoplasticity in the plant circadian clock: how plants tell the time-perature.
James AB, Syed NH, Brown JW, Nimmo HG., Plant Signal Behav 7(10), 2012
PMID: 22902701
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana.
Streitner C, Koster T, Simpson CG, Shaw P, Danisman S, Brown JW, Staiger D., Nucleic Acids Res. 40(22), 2012
PMID: 23042250
Emerging role for RNA-based regulation in plant immunity.
Staiger D, Korneli C, Lummer M, Navarro L., New Phytol. 197(2), 2012
PMID: 23163405
Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana.
Rosloski SM, Singh A, Jali SS, Balasubramanian S, Weigel D, Grbic V., Plant Mol. Biol. 81(1-2), 2012
PMID: 23111501
Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes.
Ruhl C, Stauffer E, Kahles A, Wagner G, Drechsel G, Ratsch G, Wachter A., Plant Cell 24(11), 2012
PMID: 23192226
The RNA binding protein ELF9 directly reduces SUPPRESSOR OF OVEREXPRESSION OF CO1 transcript levels in arabidopsis, possibly via nonsense-mediated mRNA decay.
Song HR, Song JD, Cho JN, Amasino RM, Noh B, Noh YS., Plant Cell 21(4), 2009
PMID: 19376936
Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development.
Zhang XN, Mount SM., Plant Physiol. 150(3), 2009
PMID: 19403727
Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia.
Koroleva OA, Calder G, Pendle AF, Kim SH, Lewandowska D, Simpson CG, Jones IM, Brown JW, Shaw PJ., Plant Cell 21(5), 2009
PMID: 19435936
Two Prp19-like U-box proteins in the MOS4-associated complex play redundant roles in plant innate immunity.
Monaghan J, Xu F, Gao M, Zhao Q, Palma K, Long C, Chen S, Zhang Y, Li X., PLoS Pathog. 5(7), 2009
PMID: 19629177
Resistance to the Pseudomonas syringae effector HopA1 is governed by the TIR-NBS-LRR protein RPS6 and is enhanced by mutations in SRFR1.
Kim SH, Kwon SI, Saha D, Anyanwu NC, Gassmann W., Plant Physiol. 150(4), 2009
PMID: 19525323
Genome sequence and analysis of the tuber crop potato.
Potato Genome Sequencing Consortium, Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, Orjeda G, Guzman F, Torres M, Lozano R, Ponce O, Martinez D, De la Cruz G, Chakrabarti SK, Patil VU, Skryabin KG, Kuznetsov BB, Ravin NV, Kolganova TV, Beletsky AV, Mardanov AV, Di Genova A, Bolser DM, Martin DM, Li G, Yang Y, Kuang H, Hu Q, Xiong X, Bishop GJ, Sagredo B, Mejia N, Zagorski W, Gromadka R, Gawor J, Szczesny P, Huang S, Zhang Z, Liang C, He J, Li Y, He Y, Xu J, Zhang Y, Xie B, Du Y, Qu D, Bonierbale M, Ghislain M, Herrera Mdel R, Giuliano G, Pietrella M, Perrotta G, Facella P, O'Brien K, Feingold SE, Barreiro LE, Massa GA, Diambra L, Whitty BR, Vaillancourt B, Lin H, Massa AN, Geoffroy M, Lundback S, DellaPenna D, Buell CR, Sharma SK, Marshall DF, Waugh R, Bryan GJ, Destefanis M, Nagy I, Milbourne D, Thomson SJ, Fiers M, Jacobs JM, Nielsen KL, Sonderkær M, Iovene M, Torres GA, Jiang J, Veilleux RE, Bachem CW, de Boer J, Borm T, Kloosterman B, van Eck H, Datema E, Hekkert Bt, Goverse A, van Ham RC, Visser RG., Nature 475(7355), 2011
PMID: 21743474
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Ratsch G, Mott R., Nature 477(7365), 2011
PMID: 21874022
Competitive inhibition of transcription factors by small interfering peptides.
Seo PJ, Hong SY, Kim SG, Park CM., Trends Plant Sci. 16(10), 2011
PMID: 21723179
Structure function analysis of an ADP-ribosyltransferase type III effector and its RNA-binding target in plant immunity.
Jeong BR, Lin Y, Joe A, Guo M, Korneli C, Yang H, Wang P, Yu M, Cerny RL, Staiger D, Alfano JR, Xu Y., J. Biol. Chem. 286(50), 2011
PMID: 22013065
Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense.
Jeong HJ, Kim YJ, Kim SH, Kim YH, Lee IJ, Kim YK, Shin JS., Plant Cell Physiol. 52(12), 2011
PMID: 22025558
Maize rough endosperm3 encodes an RNA splicing factor required for endosperm cell differentiation and has a nonautonomous effect on embryo development.
Fouquet R, Martin F, Fajardo DS, Gault CM, Gomez E, Tseung CW, Policht T, Hueros G, Settles AM., Plant Cell 23(12), 2011
PMID: 22138152
Predicting the impact of alternative splicing on plant MADS domain protein function.
Severing EI, van Dijk AD, Morabito G, Busscher-Lange J, Immink RG, van Ham RC., PLoS ONE 7(1), 2012
PMID: 22295091
A putative novel transcription factor, AtSKIP, is involved in abscisic acid signalling and confers salt and osmotic tolerance in Arabidopsis.
Lim GH, Zhang X, Chung MS, Lee DJ, Woo YM, Cheong HS, Kim CS., New Phytol. 185(1), 2009
PMID: 19765229
Expansion of the eukaryotic proteome by alternative splicing.
Nilsen TW, Graveley BR., Nature 463(7280), 2010
PMID: 20110989
The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor.
Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, Baker B., Cell 78(6), 1994
PMID: 7923359
Exon skipping induced by cold stress in a potato invertase gene transcript.
Bournay AS, Hedley PE, Maddison A, Waugh R, Machray GC., Nucleic Acids Res. 24(12), 1996
PMID: 8710506
Arabidopsis intron mutations and pre-mRNA splicing.
Brown JW., Plant J. 10(5), 1996
PMID: 8953241
Aberrant splicing of intron 1 leads to the heterogeneous 5' UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content.
Cai XL, Wang ZY, Xing YY, Zhang JL, Hong MM., Plant J. 14(4), 1998
PMID: 9670561
An intragenic suppressor of the Arabidopsis floral organ identity mutant apetala3-1 functions by suppressing defects in splicing.
Yi Y, Jack T., Plant Cell 10(9), 1998
PMID: 9724693
A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5' splice site of the first intron.
Isshiki M, Morino K, Nakajima M, Okagaki RJ, Wessler SR, Izawa T, Shimamoto K., Plant J. 15(1), 1998
PMID: 9744101
atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes.
Lopato S, Kalyna M, Dorner S, Kobayashi R, Krainer AR, Barta A., Genes Dev. 13(8), 1999
PMID: 10215626
Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a single-nucleotide polymorphism.
Larkin PD, Park WD., Plant Mol. Biol. 40(4), 1999
PMID: 10480395
A mutation in the Cap Binding Protein 20 gene confers drought tolerance to Arabidopsis.
Papp I, Mur LA, Dalmadi A, Dulai S, Koncz C., Plant Mol. Biol. 55(5), 2004
PMID: 15604709
Function of alternative splicing.
Stamm S, Ben-Ari S, Rafalska I, Tang Y, Zhang Z, Toiber D, Thanaraj TA, Soreq H., Gene 344(), 2004
PMID: 15656968
Functional distribution and dynamics of Arabidopsis SR splicing factors in living plant cells.
Tillemans V, Dispa L, Remacle C, Collinge M, Motte P., Plant J. 41(4), 2005
PMID: 15686520
At the pulse of time: protein interactions determine the pace of circadian clocks.
Schoning JC, Staiger D., FEBS Lett. 579(15), 2005
PMID: 15943968
Understanding alternative splicing: towards a cellular code.
Matlin AJ, Clark F, Smith CW., Nat. Rev. Mol. Cell Biol. 6(5), 2005
PMID: 15956978
Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures.
Graveley BR., Cell 123(1), 2005
PMID: 16213213
Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana.
Streitner C, Simpson CG, Shaw P, Danisman S, Brown JW, Staiger D., Plant Signal Behav 8(7), 2013
PMID: 23656882
Temperature-dependent regulation of flowering by antagonistic FLM variants.
Pose D, Verhage L, Ott F, Yant L, Mathieu J, Angenent GC, Immink RG, Schmid M., Nature 503(7476), 2013
PMID: 24067612
Complexity of the alternative splicing landscape in plants.
Reddy AS, Marquez Y, Kalyna M, Barta A., Plant Cell 25(10), 2013
PMID: 24179125
Salicylic acid-dependent and -independent impact of an RNA-binding protein on plant immunity.
Hackmann C, Korneli C, Kutyniok M, Koster T, Wiedenlubbert M, Muller C, Staiger D., Plant Cell Environ. 37(3), 2013
PMID: 23961939
Identification of an intronic splicing regulatory element involved in auto-regulation of alternative splicing of SCL33 pre-mRNA.
Thomas J, Palusa SG, Prasad KV, Ali GS, Surabhi GK, Ben-Hur A, Abdel-Ghany SE, Reddy AS., Plant J. 72(6), 2012
PMID: 22913769
Maize polyubiquitin genes: structure, thermal perturbation of expression and transcript splicing, and promoter activity following transfer to protoplasts by electroporation.
Christensen AH, Sharrock RA, Quail PH., Plant Mol. Biol. 18(4), 1992
PMID: 1313711
Genes encoding glycine-rich Arabidopsis thaliana proteins with RNA-binding motifs are influenced by cold treatment and an endogenous circadian rhythm.
Carpenter CD, Kreps JA, Simon AE., Plant Physiol. 104(3), 1994
PMID: 7513083
The cell nucleus and aging: tantalizing clues and hopeful promises.
Scaffidi P, Gordon L, Misteli T., PLoS Biol. 3(11), 2005
PMID: 16277559
Plant circadian rhythms.
McClung CR., Plant Cell 18(4), 2006
PMID: 16595397
STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis.
Lee BH, Kapoor A, Zhu J, Zhu JK., Plant Cell 18(7), 2006
PMID: 16751345
Potent induction of Arabidopsis thaliana flowering by elevated growth temperature.
Balasubramanian S, Sureshkumar S, Lempe J, Weigel D., PLoS Genet. 2(7), 2006
PMID: 16839183
Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins.
Kalyna M, Lopato S, Voronin V, Barta A., Nucleic Acids Res. 34(16), 2006
PMID: 16936312
AtGRP7 is involved in the regulation of abscisic acid and stress responses in Arabidopsis.
Cao S, Jiang L, Song S, Jing R, Xu G., Cell. Mol. Biol. Lett. 11(4), 2006
PMID: 17001447
Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance.
Dinesh-Kumar SP, Baker BJ., Proc. Natl. Acad. Sci. U.S.A. 97(4), 2000
PMID: 10660679
UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation.
Lambermon MH, Simpson GG, Wieczorek Kirk DA, Hemmings-Mieszczak M, Klahre U, Filipowicz W., EMBO J. 19(7), 2000
PMID: 10747031
The Arabidopsis splicing factor SR1 is regulated by alternative splicing.
Lazar G, Goodman HM., Plant Mol. Biol. 42(4), 2000
PMID: 10809003
Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.
Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA., Science 290(5499), 2000
PMID: 11118138
An mRNA cap binding protein, ABH1, modulates early abscisic acid signal transduction in Arabidopsis.
Hugouvieux V, Kwak JM, Schroeder JI., Cell 106(4), 2001
PMID: 11525733
Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis.
Xiong L, Gong Z, Rock CD, Subramanian S, Guo Y, Xu W, Galbraith D, Zhu JK., Dev. Cell 1(6), 2001
PMID: 11740939
Light modulation of Rubisco in Arabidopsis requires a capacity for redox regulation of the larger Rubisco activase isoform.
Zhang N, Kallis RP, Ewy RG, Portis AR Jr., Proc. Natl. Acad. Sci. U.S.A. 99(5), 2002
PMID: 11854454
UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants.
Lambermon MH, Fu Y, Wieczorek Kirk DA, Dupasquier M, Filipowicz W, Lorkovic ZJ., Mol. Cell. Biol. 22(12), 2002
PMID: 12024044
Transcripts of Vp-1 homeologues are misspliced in modern wheat and ancestral species.
McKibbin RS, Wilkinson MD, Bailey PC, Flintham JE, Andrew LM, Lazzeri PA, Gale MD, Lenton JR, Holdsworth MJ., Proc. Natl. Acad. Sci. U.S.A. 99(15), 2002
PMID: 12119408
Modulation of an RNA-binding protein by abscisic-acid-activated protein kinase.
Li J, Kinoshita T, Pandey S, Ng CK, Gygi SP, Shimazaki K, Assmann SM., Nature 418(6899), 2002
PMID: 12181571
Ectopic expression of atRSZ33 reveals its function in splicing and causes pleiotropic changes in development.
Kalyna M, Lopato S, Barta A., Mol. Biol. Cell 14(9), 2003
PMID: 12972547
RPS4-mediated disease resistance requires the combined presence of RPS4 transcripts with full-length and truncated open reading frames.
Zhang XC, Gassmann W., Plant Cell 15(10), 2003
PMID: 14523247
Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged.
Kazan K., Trends Plant Sci. 8(10), 2003
PMID: 14557042
A gain-of-function mutation in a plant disease resistance gene leads to constitutive activation of downstream signal transduction pathways in suppressor of npr1-1, constitutive 1.
Zhang Y, Goritschnig S, Dong X, Li X., Plant Cell 15(11), 2003
PMID: 14576290
Nuclear localization and in vivo dynamics of a plant-specific serine/arginine-rich protein.
Ali GS, Golovkin M, Reddy AS., Plant J. 36(6), 2003
PMID: 14675452
SMU-2 and SMU-1, Caenorhabditis elegans homologs of mammalian spliceosome-associated proteins RED and fSAP57, work together to affect splice site choice.
Spartz AK, Herman RK, Shaw JE., Mol. Cell. Biol. 24(15), 2004
PMID: 15254247
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences.
Iida K, Seki M, Sakurai T, Satou M, Akiyama K, Toyoda T, Konagaya A, Shinozaki K., Nucleic Acids Res. 32(17), 2004
PMID: 15452276
Spliced segments at the 5' terminus of adenovirus 2 late mRNA.
Berget SM, Moore C, Sharp PA., Proc. Natl. Acad. Sci. U.S.A. 74(8), 1977
PMID: 269380
Insights into nuclear organization in plants as revealed by the dynamic distribution of Arabidopsis SR splicing factors.
Tillemans V, Leponce I, Rausin G, Dispa L, Motte P., Plant Cell 18(11), 2006
PMID: 17114353
Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses.
Palusa SG, Ali GS, Reddy AS., Plant J. 49(6), 2007
PMID: 17319848
Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
Weber AP, Weber KL, Carr K, Wilkerson C, Ohlrogge JB., Plant Physiol. 144(1), 2007
PMID: 17351049
Regulation of plant developmental processes by a novel splicing factor.
Ali GS, Palusa SG, Golovkin M, Prasad J, Manley JL, Reddy AS., PLoS ONE 2(5), 2007
PMID: 17534421
Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms.
Palma K, Zhao Q, Cheng YT, Bi D, Monaghan J, Cheng W, Zhang Y, Li X., Genes Dev. 21(12), 2007
PMID: 17575050
Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress.
Tanabe N, Yoshimura K, Kimura A, Yabuta Y, Shigeoka S., Plant Cell Physiol. 48(7), 2007
PMID: 17556373
The Arabidopsis thaliana AT PRP39-1 gene, encoding a tetratricopeptide repeat protein with similarity to the yeast pre-mRNA processing protein PRP39, affects flowering time.
Wang C, Tian Q, Hou Z, Mucha M, Aukerman M, Olsen OA., Plant Cell Rep. 26(8), 2007
PMID: 17380304
LACHESIS restricts gametic cell fate in the female gametophyte of Arabidopsis.
Gross-Hardt R, Kagi C, Baumann N, Moore JM, Baskar R, Gagliano WB, Jurgens G, Grossniklaus U., PLoS Biol. 5(3), 2007
PMID: 17326723
The diversity of plant heat stress transcription factors.
von Koskull-Doring P, Scharf KD, Nover L., Trends Plant Sci. 12(10), 2007
PMID: 17826296
Alternative splicing and mRNA levels of the disease resistance gene RPS4 are induced during defense responses.
Zhang XC, Gassmann W., Plant Physiol. 145(4), 2007
PMID: 17951452
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