Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana
Streitner C, Simpson CG, Shaw P, Danisman S, Brown JWS, Staiger D (2013)
Plant signaling & behavior 8(7): e24638.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Streitner, CorinnaUniBi;
Simpson, Craig G.;
Shaw, Paul;
Danisman, SelahattinUniBi;
Brown, John W. S.;
Staiger, DorotheeUniBi
Abstract / Bemerkung
Alternative splicing (AS) gives rise to multiple mRNA isoforms from the same gene, providing possibilities to regulate gene expression beyond the level of transcription. In a recent paper in Nucleic Acids Research we used a high resolution RT-PCR based panel to study changes in AS patterns in plants with altered levels of an hnRNP-like RNA-binding protein in Arabidopsis thaliana. Furthermore, we detected significant changes in AS patterns between different Arabidopsis ecotypes. Here we investigated how small changes in ambient temperature affect AS. We found significant changes in AS for 12 of 28 investigated events (43%) upon transfer of Arabidopsis plants from 20°C to 16°C and for 6 of the 28 investigated events (21%) upon transfer from 20°C to 24°C.
Erscheinungsjahr
2013
Zeitschriftentitel
Plant signaling & behavior
Band
8
Ausgabe
7
Art.-Nr.
e24638
ISSN
1559-2324
eISSN
1559-2324
Page URI
https://pub.uni-bielefeld.de/record/2637173
Zitieren
Streitner C, Simpson CG, Shaw P, Danisman S, Brown JWS, Staiger D. Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant signaling & behavior. 2013;8(7): e24638.
Streitner, C., Simpson, C. G., Shaw, P., Danisman, S., Brown, J. W. S., & Staiger, D. (2013). Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant signaling & behavior, 8(7), e24638. doi:10.4161/psb.24638
Streitner, Corinna, Simpson, Craig G., Shaw, Paul, Danisman, Selahattin, Brown, John W. S., and Staiger, Dorothee. 2013. “Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana”. Plant signaling & behavior 8 (7): e24638.
Streitner, C., Simpson, C. G., Shaw, P., Danisman, S., Brown, J. W. S., and Staiger, D. (2013). Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant signaling & behavior 8:e24638.
Streitner, C., et al., 2013. Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant signaling & behavior, 8(7): e24638.
C. Streitner, et al., “Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana”, Plant signaling & behavior, vol. 8, 2013, : e24638.
Streitner, C., Simpson, C.G., Shaw, P., Danisman, S., Brown, J.W.S., Staiger, D.: Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant signaling & behavior. 8, : e24638 (2013).
Streitner, Corinna, Simpson, Craig G., Shaw, Paul, Danisman, Selahattin, Brown, John W. S., and Staiger, Dorothee. “Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana”. Plant signaling & behavior 8.7 (2013): e24638.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
18 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).
James AB, Calixto CPG, Tzioutziou NA, Guo W, Zhang R, Simpson CG, Jiang W, Nimmo GA, Brown JWS, Nimmo HG., Plant Cell Environ 41(7), 2018
PMID: 29532482
James AB, Calixto CPG, Tzioutziou NA, Guo W, Zhang R, Simpson CG, Jiang W, Nimmo GA, Brown JWS, Nimmo HG., Plant Cell Environ 41(7), 2018
PMID: 29532482
The cyclin-dependent kinase G group defines a thermo-sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU2AF65A.
Cavallari N, Nibau C, Fuchs A, Dadarou D, Barta A, Doonan JH., Plant J 94(6), 2018
PMID: 29602264
Cavallari N, Nibau C, Fuchs A, Dadarou D, Barta A, Doonan JH., Plant J 94(6), 2018
PMID: 29602264
Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome.
Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, Panter PE, Knight H, Nimmo HG, Zhang R, Brown JWS., Plant Cell 30(7), 2018
PMID: 29764987
Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, Panter PE, Knight H, Nimmo HG, Zhang R, Brown JWS., Plant Cell 30(7), 2018
PMID: 29764987
PORCUPINE regulates development in response to temperature through alternative splicing.
Capovilla G, Delhomme N, Collani S, Shutava I, Bezrukov I, Symeonidi E, de Francisco Amorim M, Laubinger S, Schmid M., Nat Plants 4(8), 2018
PMID: 29988152
Capovilla G, Delhomme N, Collani S, Shutava I, Bezrukov I, Symeonidi E, de Francisco Amorim M, Laubinger S, Schmid M., Nat Plants 4(8), 2018
PMID: 29988152
A Musashi Splice Variant and Its Interaction Partners Influence Temperature Acclimation in Chlamydomonas.
Li W, Flores DC, Füßel J, Euteneuer J, Dathe H, Zou Y, Weisheit W, Wagner V, Petersen J, Mittag M., Plant Physiol 178(4), 2018
PMID: 30301774
Li W, Flores DC, Füßel J, Euteneuer J, Dathe H, Zou Y, Weisheit W, Wagner V, Petersen J, Mittag M., Plant Physiol 178(4), 2018
PMID: 30301774
Splicing-related genes are alternatively spliced upon changes in ambient temperatures in plants.
Verhage L, Severing EI, Bucher J, Lammers M, Busscher-Lange J, Bonnema G, Rodenburg N, Proveniers MC, Angenent GC, Immink RG., PLoS One 12(3), 2017
PMID: 28257507
Verhage L, Severing EI, Bucher J, Lammers M, Busscher-Lange J, Bonnema G, Rodenburg N, Proveniers MC, Angenent GC, Immink RG., PLoS One 12(3), 2017
PMID: 28257507
RNA-Binding Proteins Revisited - The Emerging Arabidopsis mRNA Interactome.
Köster T, Marondedze C, Meyer K, Staiger D., Trends Plant Sci 22(6), 2017
PMID: 28412036
Köster T, Marondedze C, Meyer K, Staiger D., Trends Plant Sci 22(6), 2017
PMID: 28412036
A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize.
Mei W, Liu S, Schnable JC, Yeh CT, Springer NM, Schnable PS, Barbazuk WB., Front Plant Sci 8(), 2017
PMID: 28539927
Mei W, Liu S, Schnable JC, Yeh CT, Springer NM, Schnable PS, Barbazuk WB., Front Plant Sci 8(), 2017
PMID: 28539927
Trimethylguanosine Synthase1 (TGS1) Is Essential for Chilling Tolerance.
Gao J, Wallis JG, Jewell JB, Browse J., Plant Physiol 174(3), 2017
PMID: 28495891
Gao J, Wallis JG, Jewell JB, Browse J., Plant Physiol 174(3), 2017
PMID: 28495891
Chromatin marks and ambient temperature-dependent flowering strike up a novel liaison.
Steffen A, Staiger D., Genome Biol 18(1), 2017
PMID: 28629467
Steffen A, Staiger D., Genome Biol 18(1), 2017
PMID: 28629467
Evolutionarily Conserved Alternative Splicing Across Monocots.
Mei W, Boatwright L, Feng G, Schnable JC, Barbazuk WB., Genetics 207(2), 2017
PMID: 28839042
Mei W, Boatwright L, Feng G, Schnable JC, Barbazuk WB., Genetics 207(2), 2017
PMID: 28839042
Multilevel Regulation of Abiotic Stress Responses in Plants.
Haak DC, Fukao T, Grene R, Hua Z, Ivanov R, Perrella G, Li S., Front Plant Sci 8(), 2017
PMID: 29033955
Haak DC, Fukao T, Grene R, Hua Z, Ivanov R, Perrella G, Li S., Front Plant Sci 8(), 2017
PMID: 29033955
Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7.
Meyer K, Köster T, Nolte C, Weinholdt C, Lewinski M, Grosse I, Staiger D., Genome Biol 18(1), 2017
PMID: 29084609
Meyer K, Köster T, Nolte C, Weinholdt C, Lewinski M, Grosse I, Staiger D., Genome Biol 18(1), 2017
PMID: 29084609
Role of alternative pre-mRNA splicing in temperature signaling.
Capovilla G, Pajoro A, Immink RG, Schmid M., Curr Opin Plant Biol 27(), 2015
PMID: 26190743
Capovilla G, Pajoro A, Immink RG, Schmid M., Curr Opin Plant Biol 27(), 2015
PMID: 26190743
A glycine-rich RNA-binding protein affects gibberellin biosynthesis in Arabidopsis.
Löhr B, Streitner C, Steffen A, Lange T, Staiger D., Mol Biol Rep 41(1), 2014
PMID: 24281950
Löhr B, Streitner C, Steffen A, Lange T, Staiger D., Mol Biol Rep 41(1), 2014
PMID: 24281950
Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response.
Sidaway-Lee K, Costa MJ, Rand DA, Finkenstadt B, Penfield S., Genome Biol 15(3), 2014
PMID: 24580780
Sidaway-Lee K, Costa MJ, Rand DA, Finkenstadt B, Penfield S., Genome Biol 15(3), 2014
PMID: 24580780
Alternative splicing of Arabidopsis IBR5 pre-mRNA generates two IBR5 isoforms with distinct and overlapping functions.
Jayaweera T, Siriwardana C, Dharmasiri S, Quint M, Gray WM, Dharmasiri N., PLoS One 9(8), 2014
PMID: 25144378
Jayaweera T, Siriwardana C, Dharmasiri S, Quint M, Gray WM, Dharmasiri N., PLoS One 9(8), 2014
PMID: 25144378
Alternative splicing at the intersection of biological timing, development, and stress responses.
Staiger D, Brown JW., Plant Cell 25(10), 2013
PMID: 24179132
Staiger D, Brown JW., Plant Cell 25(10), 2013
PMID: 24179132
31 References
Daten bereitgestellt von Europe PubMed Central.
Alternative splicing of pre-messenger RNAs in plants in the genomic era.
Reddy AS., Annu Rev Plant Biol 58(), 2007
PMID: 17222076
Reddy AS., Annu Rev Plant Biol 58(), 2007
PMID: 17222076
Alternative splicing in plants--coming of age.
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JW., Trends Plant Sci. 17(10), 2012
PMID: 22743067
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JW., Trends Plant Sci. 17(10), 2012
PMID: 22743067
Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense?
McGlincy NJ, Smith CW., Trends Biochem. Sci. 33(8), 2008
PMID: 18621535
McGlincy NJ, Smith CW., Trends Biochem. Sci. 33(8), 2008
PMID: 18621535
Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis.
Yang X, Zhang H, Li L., Plant J. 70(3), 2012
PMID: 22247970
Yang X, Zhang H, Li L., Plant J. 70(3), 2012
PMID: 22247970
The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA.
Staiger D, Zecca L, Wieczorek Kirk DA, Apel K, Eckstein L., Plant J. 33(2), 2003
PMID: 12535349
Staiger D, Zecca L, Wieczorek Kirk DA, Apel K, Eckstein L., Plant J. 33(2), 2003
PMID: 12535349
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol J, Dinh HQ, Barta A, Brown JW., Nucleic Acids Res. 40(6), 2011
PMID: 22127866
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol J, Dinh HQ, Barta A, Brown JW., Nucleic Acids Res. 40(6), 2011
PMID: 22127866
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.
Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M., Genome Res. 22(6), 2012
PMID: 22391557
Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M., Genome Res. 22(6), 2012
PMID: 22391557
Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance.
Dinesh-Kumar SP, Baker BJ., Proc. Natl. Acad. Sci. U.S.A. 97(4), 2000
PMID: 10660679
Dinesh-Kumar SP, Baker BJ., Proc. Natl. Acad. Sci. U.S.A. 97(4), 2000
PMID: 10660679
Alternative splicing and mRNA levels of the disease resistance gene RPS4 are induced during defense responses.
Zhang XC, Gassmann W., Plant Physiol. 145(4), 2007
PMID: 17951452
Zhang XC, Gassmann W., Plant Physiol. 145(4), 2007
PMID: 17951452
Emerging role for RNA-based regulation in plant immunity.
Staiger D, Korneli C, Lummer M, Navarro L., New Phytol. 197(2), 2012
PMID: 23163405
Staiger D, Korneli C, Lummer M, Navarro L., New Phytol. 197(2), 2012
PMID: 23163405
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences.
Iida K, Seki M, Sakurai T, Satou M, Akiyama K, Toyoda T, Konagaya A, Shinozaki K., Nucleic Acids Res. 32(17), 2004
PMID: 15452276
Iida K, Seki M, Sakurai T, Satou M, Akiyama K, Toyoda T, Konagaya A, Shinozaki K., Nucleic Acids Res. 32(17), 2004
PMID: 15452276
Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements.
Reddy AS, Rogers MF, Richardson DN, Hamilton M, Ben-Hur A., Front Plant Sci 3(), 2012
PMID: 22645572
Reddy AS, Rogers MF, Richardson DN, Hamilton M, Ben-Hur A., Front Plant Sci 3(), 2012
PMID: 22645572
Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants.
Barta A, Kalyna M, Reddy AS., Plant Cell 22(9), 2010
PMID: 20884799
Barta A, Kalyna M, Reddy AS., Plant Cell 22(9), 2010
PMID: 20884799
The Role of Polypyrimidine Tract-Binding Proteins and Other hnRNP Proteins in Plant Splicing Regulation.
Wachter A, Ruhl C, Stauffer E., Front Plant Sci 3(), 2012
PMID: 22639666
Wachter A, Ruhl C, Stauffer E., Front Plant Sci 3(), 2012
PMID: 22639666
AtGRP7, a nuclear RNA-binding protein as a component of a circadian-regulated negative feedback loop in Arabidopsis thaliana.
Heintzen C, Nater M, Apel K, Staiger D., Proc. Natl. Acad. Sci. U.S.A. 94(16), 1997
PMID: 9238008
Heintzen C, Nater M, Apel K, Staiger D., Proc. Natl. Acad. Sci. U.S.A. 94(16), 1997
PMID: 9238008
A light- and temperature-entrained circadian clock controls expression of transcripts encoding nuclear proteins with homology to RNA-binding proteins in meristematic tissue.
Heintzen C, Melzer S, Fischer R, Kappeler S, Apel K, Staiger D., Plant J. 5(6), 1994
PMID: 8054987
Heintzen C, Melzer S, Fischer R, Kappeler S, Apel K, Staiger D., Plant J. 5(6), 1994
PMID: 8054987
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana.
Streitner C, Koster T, Simpson CG, Shaw P, Danisman S, Brown JW, Staiger D., Nucleic Acids Res. 40(22), 2012
PMID: 23042250
Streitner C, Koster T, Simpson CG, Shaw P, Danisman S, Brown JW, Staiger D., Nucleic Acids Res. 40(22), 2012
PMID: 23042250
Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.
Schoning JC, Streitner C, Meyer IM, Gao Y, Staiger D., Nucleic Acids Res. 36(22), 2008
PMID: 18987006
Schoning JC, Streitner C, Meyer IM, Gao Y, Staiger D., Nucleic Acids Res. 36(22), 2008
PMID: 18987006
Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts.
Simpson CG, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol J, Barta A, Brown JW., Plant J. 53(6), 2007
PMID: 18088312
Simpson CG, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol J, Barta A, Brown JW., Plant J. 53(6), 2007
PMID: 18088312
Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes.
Ruhl C, Stauffer E, Kahles A, Wagner G, Drechsel G, Ratsch G, Wachter A., Plant Cell 24(11), 2012
PMID: 23192226
Ruhl C, Stauffer E, Kahles A, Wagner G, Drechsel G, Ratsch G, Wachter A., Plant Cell 24(11), 2012
PMID: 23192226
Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC., Genome Res. 20(1), 2009
PMID: 19858364
Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC., Genome Res. 20(1), 2009
PMID: 19858364
Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes.
James AB, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JW, Nimmo HG., Plant Cell 24(3), 2012
PMID: 22408072
James AB, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JW, Nimmo HG., Plant Cell 24(3), 2012
PMID: 22408072
Thermoplasticity in the plant circadian clock: how plants tell the time-perature.
James AB, Syed NH, Brown JW, Nimmo HG., Plant Signal Behav 7(10), 2012
PMID: 22902701
James AB, Syed NH, Brown JW, Nimmo HG., Plant Signal Behav 7(10), 2012
PMID: 22902701
Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress.
Tanabe N, Yoshimura K, Kimura A, Yabuta Y, Shigeoka S., Plant Cell Physiol. 48(7), 2007
PMID: 17556373
Tanabe N, Yoshimura K, Kimura A, Yabuta Y, Shigeoka S., Plant Cell Physiol. 48(7), 2007
PMID: 17556373
The Arabidopsis splicing factor SR1 is regulated by alternative splicing.
Lazar G, Goodman HM., Plant Mol. Biol. 42(4), 2000
PMID: 10809003
Lazar G, Goodman HM., Plant Mol. Biol. 42(4), 2000
PMID: 10809003
Temperature Induced Flowering in Arabidopsis thaliana.
Balasubramanian S, Weigel D., Plant Signal Behav 1(5), 2006
PMID: 19704664
Balasubramanian S, Weigel D., Plant Signal Behav 1(5), 2006
PMID: 19704664
Potent induction of Arabidopsis thaliana flowering by elevated growth temperature.
Balasubramanian S, Sureshkumar S, Lempe J, Weigel D., PLoS Genet. 2(7), 2006
PMID: 16839183
Balasubramanian S, Sureshkumar S, Lempe J, Weigel D., PLoS Genet. 2(7), 2006
PMID: 16839183
Stress-induced alternative splicing provides a mechanism for the regulation of microRNA processing in Arabidopsis thaliana.
Yan K, Liu P, Wu CA, Yang GD, Xu R, Guo QH, Huang JG, Zheng CC., Mol. Cell 48(4), 2012
PMID: 23063528
Yan K, Liu P, Wu CA, Yang GD, Xu R, Guo QH, Huang JG, Zheng CC., Mol. Cell 48(4), 2012
PMID: 23063528
Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome.
Li F, Zheng Q, Vandivier LE, Willmann MR, Chen Y, Gregory BD., Plant Cell 24(11), 2012
PMID: 23150631
Li F, Zheng Q, Vandivier LE, Willmann MR, Chen Y, Gregory BD., Plant Cell 24(11), 2012
PMID: 23150631
A role for SR proteins in plant stress responses.
Duque P., Plant Signal Behav 6(1), 2011
PMID: 21258207
Duque P., Plant Signal Behav 6(1), 2011
PMID: 21258207
Export
Markieren/ Markierung löschen
Markierte Publikationen
Quellen
PMID: 23656882
PubMed | Europe PMC
Suchen in