Overview of BioCreative II Gene Mention Recognition

Smith L, Tanabe LK, Ando nee RJ, Juo C-J, Chung I-F, Hsu C-N, Lin Y-S, Klinger R, Friedrich CM, Ganchev K, Torii M, et al. (2008)
Genome Biology 9(Suppl 2): S2.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
URL
DOI
Autor*in
Smith, Larry; Tanabe, Lorraine K.; Ando nee, Rie Johnson; Juo, Cheng-Ju; Chung, I-Fang; Hsu, Chun-Nan; Lin, Yu-Shi; Klinger, RomanUniBi; Friedrich, Christoph M.; Ganchev, Kuzman; Torii, Manabu; Liu, Hongfang
Alle
Einrichtung
Research Institute for Cognition and Robotics
Technische Fakultät > AG Semantische Datenbanken
Center of Excellence - Cognitive Interaction Technology CITEC
Erscheinungsjahr
2008
Zeitschriftentitel
Genome Biology
Band
9
Ausgabe
Suppl 2
Art.-Nr.
S2
ISSN
1465-6906
Page URI
https://pub.uni-bielefeld.de/record/2603528

Zitieren

Smith L, Tanabe LK, Ando nee RJ, et al. Overview of BioCreative II Gene Mention Recognition. Genome Biology. 2008;9(Suppl 2): S2.
Smith, L., Tanabe, L. K., Ando nee, R. J., Juo, C. - J., Chung, I. - F., Hsu, C. - N., Lin, Y. - S., et al. (2008). Overview of BioCreative II Gene Mention Recognition. Genome Biology, 9(Suppl 2), S2. https://doi.org/10.1186/gb-2008-9-s2-s2
Smith, Larry, Tanabe, Lorraine K., Ando nee, Rie Johnson, Juo, Cheng-Ju, Chung, I-Fang, Hsu, Chun-Nan, Lin, Yu-Shi, et al. 2008. “Overview of BioCreative II Gene Mention Recognition”. Genome Biology 9 (Suppl 2): S2.
Smith, L., Tanabe, L. K., Ando nee, R. J., Juo, C. - J., Chung, I. - F., Hsu, C. - N., Lin, Y. - S., Klinger, R., Friedrich, C. M., Ganchev, K., et al. (2008). Overview of BioCreative II Gene Mention Recognition. Genome Biology 9:S2.
Smith, L., et al., 2008. Overview of BioCreative II Gene Mention Recognition. Genome Biology, 9(Suppl 2): S2.
L. Smith, et al., “Overview of BioCreative II Gene Mention Recognition”, Genome Biology, vol. 9, 2008, : S2.
Smith, L., Tanabe, L.K., Ando nee, R.J., Juo, C.-J., Chung, I.-F., Hsu, C.-N., Lin, Y.-S., Klinger, R., Friedrich, C.M., Ganchev, K., Torii, M., Liu, H., Haddow, B., Struble, C.A., Povinelli, R.J., Vlachos, A., A., W., Hunter, L., Carpenter, B., Tsai, R.T.-H., Dai, H.-jie, Liu, F., Chen, Y., Sun, C., Katrenko, S., Adriaans, P., Blaschke, C., Perez, R.T., Neves, M., Nakov, P., Divoli, A., Mana, M., Mata-Vazquez, J., Wilbur, W.J.: Overview of BioCreative II Gene Mention Recognition. Genome Biology. 9, : S2 (2008).
Smith, Larry, Tanabe, Lorraine K., Ando nee, Rie Johnson, Juo, Cheng-Ju, Chung, I-Fang, Hsu, Chun-Nan, Lin, Yu-Shi, Klinger, Roman, Friedrich, Christoph M., Ganchev, Kuzman, Torii, Manabu, Liu, Hongfang, Haddow, Barry, Struble, Craig A., Povinelli, Richard J., Vlachos, Andreas, A., William, Hunter, Lawrence, Carpenter, Bob, Tsai, Richard Tzong-Han, Dai, Hong-jie, Liu, Feng, Chen, Yifei, Sun, Chengjie, Katrenko, Sophia, Adriaans, Pieter, Blaschke, Christian, Perez, Rafel Torres, Neves, Mariana, Nakov, Preslav, Divoli, Anna, Mana, Manuel, Mata-Vazquez, Jacinto, and Wilbur, W. John. “Overview of BioCreative II Gene Mention Recognition”. Genome Biology 9.Suppl 2 (2008): S2.

Link(s) zu Volltext(en)
URL
http://genomebiology.com/2008/9/S2/S2
Access Level
Restricted Closed Access

93 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

CollaboNet: collaboration of deep neural networks for biomedical named entity recognition.
Yoon W, So CH, Lee J, Kang J., BMC Bioinformatics 20(suppl 10), 2019
PMID: 31138109
Multitask learning and benchmarking with clinical time series data.
Harutyunyan H, Khachatrian H, Kale DC, Ver Steeg G, Galstyan A., Sci Data 6(1), 2019
PMID: 31209213
Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm.
Pérez-Pérez M, Pérez-Rodríguez G, Blanco-Míguez A, Fdez-Riverola F, Valencia A, Krallinger M, Lourenço A., J Cheminform 11(1), 2019
PMID: 31236786
Extracting chemical-protein relations using attention-based neural networks.
Liu S, Shen F, Komandur Elayavilli R, Wang Y, Rastegar-Mojarad M, Chaudhary V, Liu H., Database (Oxford) 2018(), 2018
PMID: 30295724
Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicine.
Chiu B, Pyysalo S, Vulić I, Korhonen A., BMC Bioinformatics 19(1), 2018
PMID: 29402212
Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature.
Arguello Casteleiro M, Demetriou G, Read W, Fernandez Prieto MJ, Maroto N, Maseda Fernandez D, Nenadic G, Klein J, Keane J, Stevens R., J Biomed Semantics 9(1), 2018
PMID: 29650041
Constructing a database for the relations between CNV and human genetic diseases via systematic text mining.
Yang X, Song Z, Wu C, Wang W, Li G, Zhang W, Wu L, Lu K., BMC Bioinformatics 19(suppl 19), 2018
PMID: 30598077
Down-regulation of miR-146a-5p and its potential targets in hepatocellular carcinoma validated by a TCGA- and GEO-based study.
Zhang X, Ye ZH, Liang HW, Ren FH, Li P, Dang YW, Chen G., FEBS Open Bio 7(4), 2017
PMID: 28396836
From big data to diagnosis and prognosis: gene expression signatures in liver hepatocellular carcinoma.
Yang H, Zhang X, Cai XY, Wen DY, Ye ZH, Liang L, Zhang L, Wang HL, Chen G, Feng ZB., PeerJ 5(), 2017
PMID: 28316892
A neural network multi-task learning approach to biomedical named entity recognition.
Crichton G, Pyysalo S, Chiu B, Korhonen A., BMC Bioinformatics 18(1), 2017
PMID: 28810903
Active learning for ontological event extraction incorporating named entity recognition and unknown word handling.
Han X, Kim JJ, Kwoh CK., J Biomed Semantics 7(), 2016
PMID: 27127603
BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language.
Rinaldi F, Ellendorff TR, Madan S, Clematide S, van der Lek A, Mevissen T, Fluck J., Database (Oxford) 2016(), 2016
PMID: 27402677
NTTMUNSW BioC modules for recognizing and normalizing species and gene/protein mentions.
Dai HJ, Singh O, Jonnagaddala J, Su EC., Database (Oxford) 2016(), 2016
PMID: 27465130
An Encapsulation of Gene Signatures for Hepatocellular Carcinoma, MicroRNA-132 Predicted Target Genes and the Corresponding Overlaps.
Zhang X, Tang W, Chen G, Ren F, Liang H, Dang Y, Rong M., PLoS One 11(7), 2016
PMID: 27467251
Improving the dictionary lookup approach for disease normalization using enhanced dictionary and query expansion.
Jonnagaddala J, Jue TR, Chang NW, Dai HJ., Database (Oxford) 2016(), 2016
PMID: 27504009
The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge.
Pérez-Pérez M, Pérez-Rodríguez G, Rabal O, Vazquez M, Oyarzabal J, Fdez-Riverola F, Valencia A, Krallinger M, Lourenço A., Database (Oxford) 2016(), 2016
PMID: 27542845
Clinical Information Extraction at the CLEF eHealth Evaluation lab 2016.
Névéol A, Cohen KB, Grouin C, Hamon T, Lavergne T, Kelly L, Goeuriot L, Rey G, Robert A, Tannier X, Zweigenbaum P., CEUR Workshop Proc 1609(), 2016
PMID: 29308065
The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track.
Madan S, Hodapp S, Senger P, Ansari S, Szostak J, Hoeng J, Peitsch M, Fluck J., Database (Oxford) 2016(), 2016
PMID: 27694210
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions.
Vlachos IS, Paraskevopoulou MD, Karagkouni D, Georgakilas G, Vergoulis T, Kanellos I, Anastasopoulos IL, Maniou S, Karathanou K, Kalfakakou D, Fevgas A, Dalamagas T, Hatzigeorgiou AG., Nucleic Acids Res 43(database issue), 2015
PMID: 25416803
Systems pharmacology of mifepristone (RU486) reveals its 47 hub targets and network: comprehensive analysis and pharmacological focus on FAK-Src-Paxillin complex.
Yu S, Yang X, Zhu Y, Xie F, Lu Y, Yu T, Yan C, Shao J, Gao Y, Mo F, Cai G, Sinko PJ, Jia L., Sci Rep 5(), 2015
PMID: 25597938
CHEMDNER: The drugs and chemical names extraction challenge.
Krallinger M, Leitner F, Rabal O, Vazquez M, Oyarzabal J, Valencia A., J Cheminform 7(suppl 1 text mining for chemistry and the chemdner trac), 2015
PMID: 25810766
Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization.
Dai HJ, Lai PT, Chang YC, Tsai RT., J Cheminform 7(suppl 1 text mining for chemistry and the chemdner trac), 2015
PMID: 25810771
The CHEMDNER corpus of chemicals and drugs and its annotation principles.
Krallinger M, Rabal O, Leitner F, Vazquez M, Salgado D, Lu Z, Leaman R, Lu Y, Ji D, Lowe DM, Sayle RA, Batista-Navarro RT, Rak R, Huber T, Rocktäschel T, Matos S, Campos D, Tang B, Xu H, Munkhdalai T, Ryu KH, Ramanan SV, Nathan S, Žitnik S, Bajec M, Weber L, Irmer M, Akhondi SA, Kors JA, Xu S, An X, Sikdar UK, Ekbal A, Yoshioka M, Dieb TM, Choi M, Verspoor K, Khabsa M, Giles CL, Liu H, Ravikumar KE, Lamurias A, Couto FM, Dai HJ, Tsai RT, Ata C, Can T, Usié A, Alves R, Segura-Bedmar I, Martínez P, Oyarzabal J, Valencia A., J Cheminform 7(suppl 1 text mining for chemistry and the chemdner trac), 2015
PMID: 25810773
tmChem: a high performance approach for chemical named entity recognition and normalization.
Leaman R, Wei CH, Lu Z., J Cheminform 7(suppl 1 text mining for chemistry and the chemdner trac), 2015
PMID: 25810774
CHEMDNER system with mixed conditional random fields and multi-scale word clustering.
Lu Y, Ji D, Yao X, Wei X, Liang X., J Cheminform 7(suppl 1 text mining for chemistry and the chemdner trac), 2015
PMID: 25810775
A document processing pipeline for annotating chemical entities in scientific documents.
Campos D, Matos S, Oliveira JL., J Cheminform 7(suppl 1 text mining for chemistry and the chemdner trac), 2015
PMID: 25810778
A comparison of conditional random fields and structured support vector machines for chemical entity recognition in biomedical literature.
Tang B, Feng Y, Wang X, Wu Y, Zhang Y, Jiang M, Wang J, Xu H., J Cheminform 7(suppl 1 text mining for chemistry and the chemdner trac), 2015
PMID: 25810779
Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research.
Bravo À, Piñero J, Queralt-Rosinach N, Rautschka M, Furlong LI., BMC Bioinformatics 16(), 2015
PMID: 25886734
Feature engineering for drug name recognition in biomedical texts: feature conjunction and feature selection.
Liu S, Tang B, Chen Q, Wang X, Fan X., Comput Math Methods Med 2015(), 2015
PMID: 25861377
A review on computational systems biology of pathogen-host interactions.
Durmuş S, Çakır T, Özgür A, Guthke R., Front Microbiol 6(), 2015
PMID: 25914674
PALM-IST: Pathway Assembly from Literature Mining--an Information Search Tool.
Mandloi S, Chakrabarti S., Sci Rep 5(), 2015
PMID: 25989388
An integrated approach of predicted miR-34a targets identifies a signature for gastric cancer.
Tang T, Su R, Wang B, Zhang Y., Oncol Lett 10(2), 2015
PMID: 26622549
Using text mining techniques to extract phenotypic information from the PhenoCHF corpus.
Alnazzawi N, Thompson P, Batista-Navarro R, Ananiadou S., BMC Med Inform Decis Mak 15 Suppl 2(), 2015
PMID: 26099853
Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.
Pyysalo S, Ohta T, Rak R, Rowley A, Chun HW, Jung SJ, Choi SP, Tsujii J, Ananiadou S., BMC Bioinformatics 16 Suppl 10(), 2015
PMID: 26202570
Challenges in clinical natural language processing for automated disorder normalization.
Leaman R, Khare R, Lu Z., J Biomed Inform 57(), 2015
PMID: 26187250
A framework for ontology-based question answering with application to parasite immunology.
Asiaee AH, Minning T, Doshi P, Tarleton RL., J Biomed Semantics 6(), 2015
PMID: 26185615
GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains.
Wei CH, Kao HY, Lu Z., Biomed Res Int 2015(), 2015
PMID: 26380306
Text mining for systems biology.
Fluck J, Hofmann-Apitius M., Drug Discov Today 19(2), 2014
PMID: 24070668
Anatomical entity mention recognition at literature scale.
Pyysalo S, Ananiadou S., Bioinformatics 30(6), 2014
PMID: 24162468
CheNER: chemical named entity recognizer.
Usié A, Alves R, Solsona F, Vázquez M, Valencia A., Bioinformatics 30(7), 2014
PMID: 24227678
A systematic analysis of predicted MiR-31-targets identifies a diagnostic and prognostic signature for lung cancer.
Gao W, Liu L, Xu J, Shao Q, Liu Y, Zeng H, Shu Y., Biomed Pharmacother 68(4), 2014
PMID: 24726065
An analysis on the entity annotations in biological corpora.
Neves M., F1000Res 3(), 2014
PMID: 25254099
Egas: a collaborative and interactive document curation platform.
Campos D, Lourenço J, Matos S, Oliveira JL., Database (Oxford) 2014(), 2014
PMID: 24923820
Processing biological literature with customizable Web services supporting interoperable formats.
Rak R, Batista-Navarro RT, Carter J, Rowley A, Ananiadou S., Database (Oxford) 2014(), 2014
PMID: 25006225
BC4GO: a full-text corpus for the BioCreative IV GO task.
Van Auken K, Schaeffer ML, McQuilton P, Laulederkind SJ, Li D, Wang SJ, Hayman GT, Tweedie S, Arighi CN, Done J, Müller HM, Sternberg PW, Mao Y, Wei CH, Lu Z., Database (Oxford) 2014(), 2014
PMID: 25070993
LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations.
Dai HJ, Wu JC, Lin WS, Reyes AJ, Dela Rosa MA, Syed-Abdul S, Tsai RT, Hsu WL., Database (Oxford) 2014(), 2014
PMID: 25168057
Detecting miRNA Mentions and Relations in Biomedical Literature.
Bagewadi S, Bobić T, Hofmann-Apitius M, Fluck J, Klinger R., F1000Res 3(), 2014
PMID: 26535109
Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing.
Burger JD, Doughty E, Khare R, Wei CH, Mishra R, Aberdeen J, Tresner-Kirsch D, Wellner B, Kann MG, Lu Z, Hirschman L., Database (Oxford) 2014(), 2014
PMID: 25246425
A robust data-driven approach for gene ontology annotation.
Li Y, Yu H., Database (Oxford) 2014(), 2014
PMID: 25425037
A systematic analysis of the predicted human La protein targets identified a hepatitis B virus infection signature.
Tang J, Zhang ZH, Liu GL., J Viral Hepat 20(1), 2013
PMID: 23231080
Gimli: open source and high-performance biomedical name recognition.
Campos D, Matos S, Oliveira JL., BMC Bioinformatics 14(), 2013
PMID: 23413997
Application of text-mining for updating protein post-translational modification annotation in UniProtKB.
Veuthey AL, Bridge A, Gobeill J, Ruch P, McEntyre JR, Bougueleret L, Xenarios I., BMC Bioinformatics 14(), 2013
PMID: 23517090
Monitoring named entity recognition: the League Table.
Rebholz-Schuhmann D, Kafkas S, Kim JH, Jimeno Yepes A, Lewin I., J Biomed Semantics 4(1), 2013
PMID: 24034148
A modular framework for biomedical concept recognition.
Campos D, Matos S, Oliveira JL., BMC Bioinformatics 14(), 2013
PMID: 24063607
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources.
Rebholz-Schuhmann D, Kafkas S, Kim JH, Li C, Jimeno Yepes A, Hoehndorf R, Backofen R, Lewin I., J Biomed Semantics 4(1), 2013
PMID: 24112383
CoMAGC: a corpus with multi-faceted annotations of gene-cancer relations.
Lee HJ, Shim SH, Song MR, Lee H, Park JC., BMC Bioinformatics 14(), 2013
PMID: 24225062
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.
Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG., Nucleic Acids Res 40(database issue), 2012
PMID: 22135297
Substantia nigra vulnerability after a single moderate diffuse brain injury in the rat.
van Bregt DR, Thomas TC, Hinzman JM, Cao T, Liu M, Bing G, Gerhardt GA, Pauly JR, Lifshitz J., Exp Neurol 234(1), 2012
PMID: 22178300
Using an ensemble system to improve concept extraction from clinical records.
Kang N, Afzal Z, Singh B, van Mulligen EM, Kors JA., J Biomed Inform 45(3), 2012
PMID: 22239956
Training text chunkers on a silver standard corpus: can silver replace gold?
Kang N, van Mulligen EM, Kors JA., BMC Bioinformatics 13(), 2012
PMID: 22289351
Chemical Entity Recognition and Resolution to ChEBI.
Grego T, Pesquita C, Bastos HP, Couto FM., ISRN Bioinform 2012(), 2012
PMID: 25937941
Harmonization of gene/protein annotations: towards a gold standard MEDLINE.
Campos D, Matos S, Lewin I, Oliveira JL, Rebholz-Schuhmann D., Bioinformatics 28(9), 2012
PMID: 22419783
The EU-ADR corpus: annotated drugs, diseases, targets, and their relationships.
van Mulligen EM, Fourrier-Reglat A, Gurwitz D, Molokhia M, Nieto A, Trifiro G, Kors JA, Furlong LI., J Biomed Inform 45(5), 2012
PMID: 22554700
Recognition of medication information from discharge summaries using ensembles of classifiers.
Doan S, Collier N, Xu H, Pham HD, Tu MP., BMC Med Inform Decis Mak 12(), 2012
PMID: 22564405
A predicted miR-27a-mediated network identifies a signature of glioma.
Yang S, Wang K, Qian C, Song Z, Pu P, Zhang A, Wang W, Niu H, Li X, Qi X, Zhu Y, Wang Y., Oncol Rep 28(4), 2012
PMID: 22895821
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.
Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA, Bada M, Palmer M, Hunter LE., BMC Bioinformatics 13(), 2012
PMID: 22901054
Towards a semantic lexicon for clinical natural language processing.
Liu H, Wu ST, Li D, Jonnalagadda S, Sohn S, Wagholikar K, Haug PJ, Huff SM, Chute CG., AMIA Annu Symp Proc 2012(), 2012
PMID: 23304329
Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II.
Lu Z, Hirschman L., Database (Oxford) 2012(), 2012
PMID: 23160416
Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction.
Névéol A, Islamaj Doğan R, Lu Z., J Biomed Inform 44(2), 2011
PMID: 21094696
GeneTUKit: a software for document-level gene normalization.
Huang M, Liu J, Zhu X., Bioinformatics 27(7), 2011
PMID: 21303863
Integration of gene normalization stages and co-reference resolution using a Markov logic network.
Dai HJ, Chang YC, Tsai RT, Hsu WL., Bioinformatics 27(18), 2011
PMID: 21685052
Enhancing phylogeography by improving geographical information from GenBank.
Scotch M, Sarkar IN, Mei C, Leaman R, Cheung KH, Ortiz P, Singraur A, Gonzalez G., J Biomed Inform 44 Suppl 1(), 2011
PMID: 21723960
Using machine learning for concept extraction on clinical documents from multiple data sources.
Torii M, Wagholikar K, Liu H., J Am Med Inform Assoc 18(5), 2011
PMID: 21709161
Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection.
Tsai RT, Lai PT., BMC Bioinformatics 12 Suppl 8(), 2011
PMID: 22151087
The gene normalization task in BioCreative III.
Lu Z, Kao HY, Wei CH, Huang M, Liu J, Kuo CJ, Hsu CN, Tsai RT, Dai HJ, Okazaki N, Cho HC, Gerner M, Solt I, Agarwal S, Liu F, Vishnyakova D, Ruch P, Romacker M, Rinaldi F, Bhattacharya S, Srinivasan P, Liu H, Torii M, Matos S, Campos D, Verspoor K, Livingston KM, Wilbur WJ., BMC Bioinformatics 12 Suppl 8(), 2011
PMID: 22151901
Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization.
Kuo CJ, Ling MH, Hsu CN., BMC Bioinformatics 12 Suppl 8(), 2011
PMID: 22152021
Combining active learning and semi-supervised learning techniques to extract protein interaction sentences.
Song M, Yu H, Han WS., BMC Bioinformatics 12 Suppl 12(), 2011
PMID: 22168401
Moara: a Java library for extracting and normalizing gene and protein mentions.
Neves ML, Carazo JM, Pascual-Montano A., BMC Bioinformatics 11(), 2010
PMID: 20346105
Teaching computers to read the pharmacogenomics literature ... so you don't have to.
Garten Y, Altman RB., Pharmacogenomics 11(4), 2010
PMID: 20350132
Complex event extraction at PubMed scale.
Björne J, Ginter F, Pyysalo S, Tsujii J, Salakoski T., Bioinformatics 26(12), 2010
PMID: 20529932
Multistage gene normalization and SVM-based ranking for protein interactor extraction in full-text articles.
Dai HJ, Lai PT, Tsai RT., IEEE/ACM Trans Comput Biol Bioinform 7(3), 2010
PMID: 20479501
Efficient extraction of protein-protein interactions from full-text articles.
Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G., IEEE/ACM Trans Comput Biol Bioinform 7(3), 2010
PMID: 20498514
BioLMiner System: interaction normalization task and interaction pair task in the BioCreative II.5 challenge.
Chen Y, Liu F, Manderick B., IEEE/ACM Trans Comput Biol Bioinform 7(3), 2010
PMID: 20671315
An IR-aided machine learning framework for the BioCreative II.5 Challenge.
Cao Y, Li Z, Liu F, Agarwal S, Zhang Q, Yu H., IEEE/ACM Trans Comput Biol Bioinform 7(3), 2010
PMID: 20671317
An Overview of BioCreative II.5.
Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A., IEEE/ACM Trans Comput Biol Bioinform 7(3), 2010
PMID: 20704011
Recent progress in automatically extracting information from the pharmacogenomic literature.
Garten Y, Coulet A, Altman RB., Pharmacogenomics 11(10), 2010
PMID: 21047206
What the papers say: text mining for genomics and systems biology.
Harmston N, Filsell W, Stumpf MP., Hum Genomics 5(1), 2010
PMID: 21106487
BioTagger-GM: a gene/protein name recognition system.
Torii M, Hu Z, Wu CH, Liu H., J Am Med Inform Assoc 16(2), 2009
PMID: 19074302
Reflect: augmented browsing for the life scientist.
Pafilis E, O'Donoghue SI, Jensen LJ, Horn H, Kuhn M, Brown NP, Schneider R., Nat Biotechnol 27(6), 2009
PMID: 19513049
A dictionary to identify small molecules and drugs in free text.
Hettne KM, Stierum RH, Schuemie MJ, Hendriksen PJ, Schijvenaars BJ, Mulligen EM, Kleinjans J, Kors JA., Bioinformatics 25(22), 2009
PMID: 19759196
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.
Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A., Genome Biol 9 Suppl 2(), 2008
PMID: 18834487
Introducing meta-services for biomedical information extraction.
Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo CJ, Hsu CN, Tsai RT, Hung HC, Lau WW, Johnson CA, Saetre R, Yoshida K, Chen YH, Kim S, Shin SY, Zhang BT, Baumgartner WA, Hunter L, Haddow B, Matthews M, Wang X, Ruch P, Ehrler F, Ozgür A, Erkan G, Radev DR, Krauthammer M, Luong T, Hoffmann R, Sander C, Valencia A., Genome Biol 9 Suppl 2(), 2008
PMID: 18834497
Linking genes to literature: text mining, information extraction, and retrieval applications for biology.
Krallinger M, Valencia A, Hirschman L., Genome Biol 9 Suppl 2(), 2008
PMID: 18834499

8 References

Daten bereitgestellt von Europe PubMed Central.

Tagging gene and protein names in biomedical text.
Tanabe L, Wilbur WJ., Bioinformatics 18(8), 2002
PMID: 12176836
A simple algorithm for identifying abbreviation definitions in biomedical text.
Schwartz AS, Hearst MA., Pac Symp Biocomput (), 2003
PMID: 12603049
The Unified Medical Language System (UMLS): integrating biomedical terminology.
Bodenreider O., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681409
MedPost: a part-of-speech tagger for bioMedical text.
Smith L, Rindflesch T, Wilbur WJ., Bioinformatics 20(14), 2004
PMID: 15073016
BioCreAtIvE task 1A: gene mention finding evaluation.
Yeh A, Morgan A, Colosimo M, Hirschman L., BMC Bioinformatics 6 Suppl 1(), 2005
PMID: 15960832
GENETAG: a tagged corpus for gene/protein named entity recognition.
Tanabe L, Xie N, Thom LH, Matten W, Wilbur WJ., BMC Bioinformatics 6 Suppl 1(), 2005
PMID: 15960837
BioThesaurus: a web-based thesaurus of protein and gene names.
Liu H, Hu ZZ, Zhang J, Wu C., Bioinformatics 22(1), 2005
PMID: 16267085
NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition.
Tsai RT, Sung CL, Dai HJ, Hung HC, Sung TY, Hsu WL., BMC Bioinformatics 7 Suppl 5(), 2006
PMID: 17254295
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 18834493
PubMed | Europe PMC

Suchen in

Google Scholar