GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana
Bolle C, Huep G, Kleinbölting N, Haberer G, Mayer K, Leister D, Weisshaar B (2013)
The Plant Journal 75(1): 157-171.
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Autor*in
Bolle, Cordelia;
Huep, GunnarUniBi;
Kleinbölting, NilsUniBi;
Haberer, Georg;
Mayer, Klaus;
Leister, Dario;
Weisshaar, BerndUniBi
Einrichtung
Abstract / Bemerkung
Owing to duplication events in its progenitor, more than 90% of the genes in the Arabidopsis thaliana genome are members of multigene families. A set of 2108 gene families, each consisting of precisely two unlinked paralogous genes, was identified in the nuclear genome of A. thaliana on the basis of sequence similarity. A systematic method for the creation of double knock-out lines for such gene pairs, designated as DUPLO lines, was established and 200 lines are now publicly available. Their initial phenotypic characterisation led to the identification of seven lines with defects that emerge only in the adult stage. A further six lines display seedling lethality and 23 lines were lethal before germination. Another 14 lines are known to show phenotypes under non-standard conditions or at the molecular level. Knock-out of gene pairs with very similar coding sequences or expression profiles is more likely to produce a mutant phenotype than inactivation of gene pairs with dissimilar profiles or sequences. High coding sequence similarity and highly similar expression profiles are only weakly correlated, implying that promoter and coding regions of these gene pairs display different degrees of diversification.
Erscheinungsjahr
2013
Zeitschriftentitel
The Plant Journal
Band
75
Ausgabe
1
Seite(n)
157-171
ISSN
0960-7412
Page URI
https://pub.uni-bielefeld.de/record/2579749
Zitieren
Bolle C, Huep G, Kleinbölting N, et al. GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana. The Plant Journal. 2013;75(1):157-171.
Bolle, C., Huep, G., Kleinbölting, N., Haberer, G., Mayer, K., Leister, D., & Weisshaar, B. (2013). GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana. The Plant Journal, 75(1), 157-171. doi:10.1111/tpj.12197
Bolle, Cordelia, Huep, Gunnar, Kleinbölting, Nils, Haberer, Georg, Mayer, Klaus, Leister, Dario, and Weisshaar, Bernd. 2013. “GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana”. The Plant Journal 75 (1): 157-171.
Bolle, C., Huep, G., Kleinbölting, N., Haberer, G., Mayer, K., Leister, D., and Weisshaar, B. (2013). GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana. The Plant Journal 75, 157-171.
Bolle, C., et al., 2013. GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana. The Plant Journal, 75(1), p 157-171.
C. Bolle, et al., “GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana”, The Plant Journal, vol. 75, 2013, pp. 157-171.
Bolle, C., Huep, G., Kleinbölting, N., Haberer, G., Mayer, K., Leister, D., Weisshaar, B.: GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana. The Plant Journal. 75, 157-171 (2013).
Bolle, Cordelia, Huep, Gunnar, Kleinbölting, Nils, Haberer, Georg, Mayer, Klaus, Leister, Dario, and Weisshaar, Bernd. “GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana”. The Plant Journal 75.1 (2013): 157-171.
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Lariguet P, Boccalandro HE, Alonso JM, Ecker JR, Chory J, Casal JJ, Fankhauser C., Plant Cell 15(12), 2003
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The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis.
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TRAF1 and its biological functions.
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Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance gene.
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Mitochondrial complex II Is essential for gametophyte development in Arabidopsis.
Leon G, Holuigue L, Jordana X., Plant Physiol. 143(4), 2007
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The Arabidopsis checkpoint protein Bub3.1 is essential for gametophyte development.
Lermontova I, Fuchs J, Schubert I., Front. Biosci. 13(), 2008
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Class I alpha-mannosidases are required for N-glycan processing and root development in Arabidopsis thaliana.
Liebminger E, Huttner S, Vavra U, Fischl R, Schoberer J, Grass J, Blaukopf C, Seifert GJ, Altmann F, Mach L, Strasser R., Plant Cell 21(12), 2009
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Liu Q, Zhang C, Yang Y, Hu X., BMC Plant Biol. 10(), 2010
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Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW., Plant Cell 15(4), 2003
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O'Malley RC, Ecker JR., Plant J. 61(6), 2010
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Paterson AH, Freeling M, Tang H, Wang X., Annu Rev Plant Biol 61(), 2010
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Mutants, overexpressors, and interactors of Arabidopsis plastocyanin isoforms: revised roles of plastocyanin in photosynthetic electron flow and thylakoid redox state.
Pesaresi P, Scharfenberg M, Weigel M, Granlund I, Schroder WP, Finazzi G, Rappaport F, Masiero S, Furini A, Jahns P, Leister D., Mol Plant 2(2), 2008
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The nucleotide sugar transporters AtUTr1 and AtUTr3 are required for the incorporation of UDP-glucose into the endoplasmic reticulum, are essential for pollen development and are needed for embryo sac progress in Arabidopsis thaliana.
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Arabidopsis cytokinin receptor mutants reveal functions in shoot growth, leaf senescence, seed size, germination, root development, and cytokinin metabolism.
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Rizza A, Boccaccini A, Lopez-Vidriero I, Costantino P, Vittorioso P., New Phytol. 190(4), 2011
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The FRD3 citrate effluxer promotes iron nutrition between symplastically disconnected tissues throughout Arabidopsis development.
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Primer3 on the WWW for general users and for biologist programmers.
Rozen S, Skaletsky H., Methods Mol. Biol. 132(), 2000
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Rutter MT, Cross KV, Van Woert PA., Trends Plant Sci. 17(4), 2012
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ARAMEMNON, a novel database for Arabidopsis integral membrane proteins.
Schwacke R, Schneider A, van der Graaff E, Fischer K, Catoni E, Desimone M, Frommer WB, Flugge UI, Kunze R., Plant Physiol. 131(1), 2003
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Simillion C, Vandepoele K, Van Montagu MC, Zabeau M, Van de Peer Y., Proc. Natl. Acad. Sci. U.S.A. 99(21), 2002
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Strasser R, Altmann F, Mach L, Glossl J, Steinkellner H., FEBS Lett. 561(1-3), 2004
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Loss of function of 3-hydroxy-3-methylglutaryl coenzyme A reductase 1 (HMG1) in Arabidopsis leads to dwarfing, early senescence and male sterility, and reduced sterol levels.
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Complete blockage of the mevalonate pathway results in male gametophyte lethality.
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Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH., Science 320(5875), 2008
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Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.
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Van de Peer Y, Fawcett JA, Proost S, Sterck L, Vandepoele K., Trends Plant Sci. 14(12), 2009
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Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice.
Vandepoele K, Simillion C, Van de Peer Y., Trends Genet. 18(12), 2002
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Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1.
Wang H, Deng XW., EMBO J. 21(6), 2002
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The evolution of Brassica napus FLOWERING LOCUS T paralogues in the context of inverted chromosomal duplication blocks.
Wang J, Long Y, Wu B, Liu J, Jiang C, Shi L, Zhao J, King GJ, Meng J., BMC Evol. Biol. 9(), 2009
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The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA.
Watkins NJ, Bohnsack MT., Wiley Interdiscip Rev RNA 3(3), 2011
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Plastocyanin is indispensable for photosynthetic electron flow in Arabidopsis thaliana.
Weigel M, Varotto C, Pesaresi P, Finazzi G, Rappaport F, Salamini F, Leister D., J. Biol. Chem. 278(33), 2003
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Weigel M, Varotto C, Pesaresi P, Finazzi G, Rappaport F, Salamini F, Leister D., J. Biol. Chem. 278(33), 2003
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Lack of cytochrome c in Arabidopsis decreases stability of Complex IV and modifies redox metabolism without affecting Complexes I and III.
Welchen E, Hildebrandt TM, Lewejohann D, Gonzalez DH, Braun HP., Biochim. Biophys. Acta 1817(7), 2012
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Winter D, Vinegar B, Nahal H, Ammar R, Wilson GV, Provart NJ., PLoS ONE 2(8), 2007
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Winter D, Vinegar B, Nahal H, Ammar R, Wilson GV, Provart NJ., PLoS ONE 2(8), 2007
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Arabidopsis SPIRAL2 promotes uninterrupted microtubule growth by suppressing the pause state of microtubule dynamics.
Yao M, Wakamatsu Y, Itoh TJ, Shoji T, Hashimoto T., J. Cell. Sci. 121(Pt 14), 2008
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Yao M, Wakamatsu Y, Itoh TJ, Shoji T, Hashimoto T., J. Cell. Sci. 121(Pt 14), 2008
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Type-B ARR transcription factors, ARR10 and ARR12, are implicated in cytokinin-mediated regulation of protoxylem differentiation in roots of Arabidopsis thaliana.
Yokoyama A, Yamashino T, Amano Y, Tajima Y, Imamura A, Sakakibara H, Mizuno T., Plant Cell Physiol. 48(1), 2006
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Yokoyama A, Yamashino T, Amano Y, Tajima Y, Imamura A, Sakakibara H, Mizuno T., Plant Cell Physiol. 48(1), 2006
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Arabidopsis trithorax-related3/SET domain GROUP2 is required for the winter-annual habit of Arabidopsis thaliana.
Yun JY, Tamada Y, Kang YE, Amasino RM., Plant Cell Physiol. 53(5), 2012
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Yun JY, Tamada Y, Kang YE, Amasino RM., Plant Cell Physiol. 53(5), 2012
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Negative regulation of defense responses in Arabidopsis by two NPR1 paralogs.
Zhang Y, Cheng YT, Qu N, Zhao Q, Bi D, Li X., Plant J. 48(5), 2006
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Zhang Y, Cheng YT, Qu N, Zhao Q, Bi D, Li X., Plant J. 48(5), 2006
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