Suppression of ghost distances in multiple-spin double electron-electron resonance
von Hagens T, Polyhach Y, Sajid M, Godt A, Jeschke G (2013)
Physical Chemistry Chemical Physics 15(16): 5854-5866.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
von Hagens, Tona;
Polyhach, Yevhen;
Sajid, Muhammad;
Godt, AdelheidUniBi;
Jeschke, Gunnar
Abstract / Bemerkung
Distance measurements by pulse electron paramagnetic resonance techniques are increasingly applied to multiple-spin systems. In the double electron-electron resonance experiment, more than two dipolar coupled spins manifest in an increased total modulation depth and in sum and difference dipolar frequency contributions that give rise to additional peaks appearing in the distance distribution, which do not correspond to the real interspin distances of the system and are hence referred to as ghost contributions. These ghost contributions may be so prominent that they might be mistaken for real distance peaks or that real distance peaks shift their position or disappear. We present a simple approximate procedure to suppress ghost distances to a great extent by manipulating the experimentally obtained form factor during data analysis by a simple power scaling with a scaling exponent zeta(N) = 1/(1-N), with N being the number of coupled spins in the system. This approach requires neither further experimental effort nor exact knowledge about labelling and inversion efficiency. This should enable routine application to biological systems. The approach is validated on simulated test cases for up to five spins and applied to synthetic model samples. The suppression of ghost distances with the presented approach works best for symmetric geometries and rigid molecules which, at the same time, are the cases where ghost contributions are most disturbing. The distance distributions obtained by power scaling are consistent with distributions that were obtained with previously obtained alternative approaches and agree, in some cases, strikingly well with the expectations for the true interspin distance distributions.
Erscheinungsjahr
2013
Zeitschriftentitel
Physical Chemistry Chemical Physics
Band
15
Ausgabe
16
Seite(n)
5854-5866
ISSN
1463-9076
eISSN
1463-9084
Page URI
https://pub.uni-bielefeld.de/record/2578757
Zitieren
von Hagens T, Polyhach Y, Sajid M, Godt A, Jeschke G. Suppression of ghost distances in multiple-spin double electron-electron resonance. Physical Chemistry Chemical Physics. 2013;15(16):5854-5866.
von Hagens, T., Polyhach, Y., Sajid, M., Godt, A., & Jeschke, G. (2013). Suppression of ghost distances in multiple-spin double electron-electron resonance. Physical Chemistry Chemical Physics, 15(16), 5854-5866. doi:10.1039/c3cp44462g
von Hagens, Tona, Polyhach, Yevhen, Sajid, Muhammad, Godt, Adelheid, and Jeschke, Gunnar. 2013. “Suppression of ghost distances in multiple-spin double electron-electron resonance”. Physical Chemistry Chemical Physics 15 (16): 5854-5866.
von Hagens, T., Polyhach, Y., Sajid, M., Godt, A., and Jeschke, G. (2013). Suppression of ghost distances in multiple-spin double electron-electron resonance. Physical Chemistry Chemical Physics 15, 5854-5866.
von Hagens, T., et al., 2013. Suppression of ghost distances in multiple-spin double electron-electron resonance. Physical Chemistry Chemical Physics, 15(16), p 5854-5866.
T. von Hagens, et al., “Suppression of ghost distances in multiple-spin double electron-electron resonance”, Physical Chemistry Chemical Physics, vol. 15, 2013, pp. 5854-5866.
von Hagens, T., Polyhach, Y., Sajid, M., Godt, A., Jeschke, G.: Suppression of ghost distances in multiple-spin double electron-electron resonance. Physical Chemistry Chemical Physics. 15, 5854-5866 (2013).
von Hagens, Tona, Polyhach, Yevhen, Sajid, Muhammad, Godt, Adelheid, and Jeschke, Gunnar. “Suppression of ghost distances in multiple-spin double electron-electron resonance”. Physical Chemistry Chemical Physics 15.16 (2013): 5854-5866.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
27 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Interpretation of spectroscopic data using molecular simulations for the secondary active transporter BetP.
Leone V, Waclawska I, Kossmann K, Koshy C, Sharma M, Prisner TF, Ziegler C, Endeward B, Forrest LR., J Gen Physiol 151(3), 2019
PMID: 30728216
Leone V, Waclawska I, Kossmann K, Koshy C, Sharma M, Prisner TF, Ziegler C, Endeward B, Forrest LR., J Gen Physiol 151(3), 2019
PMID: 30728216
Comparison of the functional properties of trimeric and monomeric CaiT of Escherichia coli.
Bracher S, Hilger D, Guérin K, Polyhach Y, Jeschke G, Krafczyk R, Giacomelli G, Jung H., Sci Rep 9(1), 2019
PMID: 30846799
Bracher S, Hilger D, Guérin K, Polyhach Y, Jeschke G, Krafczyk R, Giacomelli G, Jung H., Sci Rep 9(1), 2019
PMID: 30846799
Exploration of the TRIM Fold of MuRF1 Using EPR Reveals a Canonical Antiparallel Structure and Extended COS-Box.
Stevens M, Franke B, Skorupka KA, Cafiso DS, Pornillos O, Mayans O, Norman DG., J Mol Biol 431(15), 2019
PMID: 31125568
Stevens M, Franke B, Skorupka KA, Cafiso DS, Pornillos O, Mayans O, Norman DG., J Mol Biol 431(15), 2019
PMID: 31125568
Alamethicin self-assembling in lipid membranes: concentration dependence from pulsed EPR of spin labels.
Syryamina VN, De Zotti M, Toniolo C, Formaggio F, Dzuba SA., Phys Chem Chem Phys 20(5), 2018
PMID: 29340383
Syryamina VN, De Zotti M, Toniolo C, Formaggio F, Dzuba SA., Phys Chem Chem Phys 20(5), 2018
PMID: 29340383
Nitroxide-nitroxide and nitroxide-metal distance measurements in transition metal complexes with two or three paramagnetic centres give access to thermodynamic and kinetic stabilities.
Giannoulis A, Ackermann K, Spindler PE, Higgins C, Cordes DB, Slawin AMZ, Prisner TF, Bode BE., Phys Chem Chem Phys 20(16), 2018
PMID: 29629718
Giannoulis A, Ackermann K, Spindler PE, Higgins C, Cordes DB, Slawin AMZ, Prisner TF, Bode BE., Phys Chem Chem Phys 20(16), 2018
PMID: 29629718
Performance of PELDOR, RIDME, SIFTER, and DQC in measuring distances in trityl based bi- and triradicals: exchange coupling, pseudosecular coupling and multi-spin effects.
Meyer A, Jassoy JJ, Spicher S, Berndhäuser A, Schiemann O., Phys Chem Chem Phys 20(20), 2018
PMID: 29740656
Meyer A, Jassoy JJ, Spicher S, Berndhäuser A, Schiemann O., Phys Chem Chem Phys 20(20), 2018
PMID: 29740656
The voltage-gated sodium channel pore exhibits conformational flexibility during slow inactivation.
Chatterjee S, Vyas R, Chalamalasetti SV, Sahu ID, Clatot J, Wan X, Lorigan GA, Deschênes I, Chakrapani S., J Gen Physiol 150(9), 2018
PMID: 30082431
Chatterjee S, Vyas R, Chalamalasetti SV, Sahu ID, Clatot J, Wan X, Lorigan GA, Deschênes I, Chakrapani S., J Gen Physiol 150(9), 2018
PMID: 30082431
Deep neural network processing of DEER data.
Worswick SG, Spencer JA, Jeschke G, Kuprov I., Sci Adv 4(8), 2018
PMID: 30151430
Worswick SG, Spencer JA, Jeschke G, Kuprov I., Sci Adv 4(8), 2018
PMID: 30151430
Double electron-electron resonance with multiple non-selective chirp refocusing.
Doll A, Jeschke G., Phys Chem Chem Phys 19(2), 2017
PMID: 27976758
Doll A, Jeschke G., Phys Chem Chem Phys 19(2), 2017
PMID: 27976758
Oligomeric Structure of Anabaena Sensory Rhodopsin in a Lipid Bilayer Environment by Combining Solid-State NMR and Long-range DEER Constraints.
Milikisiyants S, Wang S, Munro RA, Donohue M, Ward ME, Bolton D, Brown LS, Smirnova TI, Ladizhansky V, Smirnov AI., J Mol Biol 429(12), 2017
PMID: 28501588
Milikisiyants S, Wang S, Munro RA, Donohue M, Ward ME, Bolton D, Brown LS, Smirnova TI, Ladizhansky V, Smirnov AI., J Mol Biol 429(12), 2017
PMID: 28501588
Reliable nanometre-range distance distributions from 5-pulse double electron electron resonance.
Breitgoff FD, Polyhach YO, Jeschke G., Phys Chem Chem Phys 19(24), 2017
PMID: 28569894
Breitgoff FD, Polyhach YO, Jeschke G., Phys Chem Chem Phys 19(24), 2017
PMID: 28569894
Natural Conformational Sampling of Human TNFα Visualized by Double Electron-Electron Resonance.
Carrington B, Myers WK, Horanyi P, Calmiano M, Lawson ADG., Biophys J 113(2), 2017
PMID: 28746848
Carrington B, Myers WK, Horanyi P, Calmiano M, Lawson ADG., Biophys J 113(2), 2017
PMID: 28746848
Pulsed triple electron resonance (TRIER) for dipolar correlation spectroscopy.
Pribitzer S, Sajid M, Hülsmann M, Godt A, Jeschke G., J Magn Reson 282(), 2017
PMID: 28802243
Pribitzer S, Sajid M, Hülsmann M, Godt A, Jeschke G., J Magn Reson 282(), 2017
PMID: 28802243
Sparse Labeling PELDOR Spectroscopy on Multimeric Mechanosensitive Membrane Channels.
Ackermann K, Pliotas C, Valera S, Naismith JH, Bode BE., Biophys J 113(9), 2017
PMID: 29117521
Ackermann K, Pliotas C, Valera S, Naismith JH, Bode BE., Biophys J 113(9), 2017
PMID: 29117521
EPR Studies of V-ATPase with Spin-Labeled Inhibitors DCC and Archazolid: Interaction Dynamics with Proton Translocating Subunit c.
Gölz JP, Bockelmann S, Mayer K, Steinhoff HJ, Wieczorek H, Huss M, Klare JP, Menche D., ChemMedChem 11(4), 2016
PMID: 26662886
Gölz JP, Bockelmann S, Mayer K, Steinhoff HJ, Wieczorek H, Huss M, Klare JP, Menche D., ChemMedChem 11(4), 2016
PMID: 26662886
Accurate Extraction of Nanometer Distances in Multimers by Pulse EPR.
Valera S, Ackermann K, Pliotas C, Huang H, Naismith JH, Bode BE., Chemistry 22(14), 2016
PMID: 26865468
Valera S, Ackermann K, Pliotas C, Huang H, Naismith JH, Bode BE., Chemistry 22(14), 2016
PMID: 26865468
Single and double nitroxide labeled bis(terpyridine)-copper(II): influence of orientation selectivity and multispin effects on PELDOR and RIDME.
Meyer A, Abdullin D, Schnakenburg G, Schiemann O., Phys Chem Chem Phys 18(13), 2016
PMID: 26975335
Meyer A, Abdullin D, Schnakenburg G, Schiemann O., Phys Chem Chem Phys 18(13), 2016
PMID: 26975335
Insights into the Conformation of the Membrane Proximal Regions Critical to the Trimerization of the HIV-1 gp41 Ectodomain Bound to Dodecyl Phosphocholine Micelles.
Louis JM, Baber JL, Ghirlando R, Aniana A, Bax A, Roche J., PLoS One 11(8), 2016
PMID: 27513582
Louis JM, Baber JL, Ghirlando R, Aniana A, Bax A, Roche J., PLoS One 11(8), 2016
PMID: 27513582
Structural insight into the role of the Ton complex in energy transduction.
Celia H, Noinaj N, Zakharov SD, Bordignon E, Botos I, Santamaria M, Barnard TJ, Cramer WA, Lloubes R, Buchanan SK., Nature 538(7623), 2016
PMID: 27654919
Celia H, Noinaj N, Zakharov SD, Bordignon E, Botos I, Santamaria M, Barnard TJ, Cramer WA, Lloubes R, Buchanan SK., Nature 538(7623), 2016
PMID: 27654919
Long Distance Measurements up to 160 Å in the GroEL Tetradecamer Using Q-Band DEER EPR Spectroscopy.
Schmidt T, Wälti MA, Baber JL, Hustedt EJ, Clore GM., Angew Chem Int Ed Engl 55(51), 2016
PMID: 27860003
Schmidt T, Wälti MA, Baber JL, Hustedt EJ, Clore GM., Angew Chem Int Ed Engl 55(51), 2016
PMID: 27860003
Structural Insights into the Incorporation of the Mo Cofactor into Sulfite Oxidase from Site-Directed Spin Labeling.
Hahn A, Engelhard C, Reschke S, Teutloff C, Bittl R, Leimkühler S, Risse T., Angew Chem Int Ed Engl 54(40), 2015
PMID: 26286921
Hahn A, Engelhard C, Reschke S, Teutloff C, Bittl R, Leimkühler S, Risse T., Angew Chem Int Ed Engl 54(40), 2015
PMID: 26286921
A Straightforward Approach to the Analysis of Double Electron-Electron Resonance Data.
Stein RA, Beth AH, Hustedt EJ., Methods Enzymol 563(), 2015
PMID: 26478498
Stein RA, Beth AH, Hustedt EJ., Methods Enzymol 563(), 2015
PMID: 26478498
The C34 Peptide Fusion Inhibitor Binds to the Six-Helix Bundle Core Domain of HIV-1 gp41 by Displacement of the C-Terminal Helical Repeat Region.
Louis JM, Baber JL, Clore GM., Biochemistry 54(45), 2015
PMID: 26506247
Louis JM, Baber JL, Clore GM., Biochemistry 54(45), 2015
PMID: 26506247
Probing the structure of the mechanosensitive channel of small conductance in lipid bilayers with pulsed electron-electron double resonance.
Ward R, Pliotas C, Branigan E, Hacker C, Rasmussen A, Hagelueken G, Booth IR, Miller S, Lucocq J, Naismith JH, Schiemann O., Biophys J 106(4), 2014
PMID: 24559986
Ward R, Pliotas C, Branigan E, Hacker C, Rasmussen A, Hagelueken G, Booth IR, Miller S, Lucocq J, Naismith JH, Schiemann O., Biophys J 106(4), 2014
PMID: 24559986
Strategies for the synthesis of yardsticks and abaci for nanometre distance measurements by pulsed EPR.
Valera S, Bode BE., Molecules 19(12), 2014
PMID: 25479188
Valera S, Bode BE., Molecules 19(12), 2014
PMID: 25479188
PELDOR in rotationally symmetric homo-oligomers.
Giannoulis A, Ward R, Branigan E, Naismith JH, Bode BE., Mol Phys 111(18-19), 2013
PMID: 24954956
Giannoulis A, Ward R, Branigan E, Naismith JH, Bode BE., Mol Phys 111(18-19), 2013
PMID: 24954956
ESR study of interfacial hydration layers of polypeptides in water-filled nanochannels and in vitrified bulk solvents.
Lai YC, Chen YF, Chiang YW., PLoS One 8(6), 2013
PMID: 23840841
Lai YC, Chen YF, Chiang YW., PLoS One 8(6), 2013
PMID: 23840841
27 References
Daten bereitgestellt von Europe PubMed Central.
Long-range distance determinations in biomacromolecules by EPR spectroscopy.
Schiemann O, Prisner TF., Q. Rev. Biophys. 40(1), 2007
PMID: 17565764
Schiemann O, Prisner TF., Q. Rev. Biophys. 40(1), 2007
PMID: 17565764
Tsvetkov, Russ. Chem. Rev. 77(), 2008
Concentration-dependent oligomerization and oligomeric arrangement of LptA.
Merten JA, Schultz KM, Klug CS., Protein Sci. 21(2), 2011
PMID: 22109962
Merten JA, Schultz KM, Klug CS., Protein Sci. 21(2), 2011
PMID: 22109962
DEER in biological multispin-systems: a case study on the fatty acid binding to human serum albumin.
Junk MJ, Spiess HW, Hinderberger D., J. Magn. Reson. 210(2), 2011
PMID: 21450500
Junk MJ, Spiess HW, Hinderberger D., J. Magn. Reson. 210(2), 2011
PMID: 21450500
Braun, Angew. Chem., Int. Ed. 50(), 2011
Rigid core and flexible terminus: structure of solubilized light-harvesting chlorophyll a/b complex (LHCII) measured by EPR.
Dockter C, Muller AH, Dietz C, Volkov A, Polyhach Y, Jeschke G, Paulsen H., J. Biol. Chem. 287(4), 2011
PMID: 22147706
Dockter C, Muller AH, Dietz C, Volkov A, Polyhach Y, Jeschke G, Paulsen H., J. Biol. Chem. 287(4), 2011
PMID: 22147706
Pulsed electron-electron double-resonance determination of spin-label distances and orientations on the tetrameric potassium ion channel KcsA.
Endeward B, Butterwick JA, MacKinnon R, Prisner TF., J. Am. Chem. Soc. 131(42), 2009
PMID: 19919160
Endeward B, Butterwick JA, MacKinnon R, Prisner TF., J. Am. Chem. Soc. 131(42), 2009
PMID: 19919160
Symmetry-constrained analysis of pulsed double electron-electron resonance (DEER) spectroscopy reveals the dynamic nature of the KcsA activation gate.
Dalmas O, Hyde HC, Hulse RE, Perozo E., J. Am. Chem. Soc. 134(39), 2012
PMID: 22946877
Dalmas O, Hyde HC, Hulse RE, Perozo E., J. Am. Chem. Soc. 134(39), 2012
PMID: 22946877
Three-spin correlations in double electron-electron resonance.
Jeschke G, Sajid M, Schulte M, Godt A., Phys Chem Chem Phys 11(31), 2009
PMID: 19639133
Jeschke G, Sajid M, Schulte M, Godt A., Phys Chem Chem Phys 11(31), 2009
PMID: 19639133
Jeschke, Appl. Magn. Reson. 30(), 2006
Distance measurements on spin-labelled biomacromolecules by pulsed electron paramagnetic resonance.
Jeschke G, Polyhach Y., Phys Chem Chem Phys 9(16), 2007
PMID: 17431518
Jeschke G, Polyhach Y., Phys Chem Chem Phys 9(16), 2007
PMID: 17431518
High sensitivity and versatility of the DEER experiment on nitroxide radical pairs at Q-band frequencies.
Polyhach Y, Bordignon E, Tschaggelar R, Gandra S, Godt A, Jeschke G., Phys Chem Chem Phys 14(30), 2012
PMID: 22751953
Polyhach Y, Bordignon E, Tschaggelar R, Gandra S, Godt A, Jeschke G., Phys Chem Chem Phys 14(30), 2012
PMID: 22751953
Nonselective excitation of pulsed ELDOR using multi-frequency microwaves.
Asada Y, Mutoh R, Ishiura M, Mino H., J. Magn. Reson. 213(1), 2011
PMID: 21978661
Asada Y, Mutoh R, Ishiura M, Mino H., J. Magn. Reson. 213(1), 2011
PMID: 21978661
Shaped optimal control pulses for increased excitation bandwidth in EPR.
Spindler PE, Zhang Y, Endeward B, Gershernzon N, Skinner TE, Glaser SJ, Prisner TF., J. Magn. Reson. 218(), 2012
PMID: 22578555
Spindler PE, Zhang Y, Endeward B, Gershernzon N, Skinner TE, Glaser SJ, Prisner TF., J. Magn. Reson. 218(), 2012
PMID: 22578555
Adiabatic and fast passage ultra-wideband inversion in pulsed EPR.
Doll A, Pribitzer S, Tschaggelar R, Jeschke G., J. Magn. Reson. 230(), 2013
PMID: 23434533
Doll A, Pribitzer S, Tschaggelar R, Jeschke G., J. Magn. Reson. 230(), 2013
PMID: 23434533
A short note on the analysis of distance measurements by electron paramagnetic resonance.
Domingo Kohler S, Spitzbarth M, Diederichs K, Exner TE, Drescher M., J. Magn. Reson. 208(1), 2010
PMID: 21044853
Domingo Kohler S, Spitzbarth M, Diederichs K, Exner TE, Drescher M., J. Magn. Reson. 208(1), 2010
PMID: 21044853
Counting the monomers in nanometer-sized oligomers by pulsed electron-electron double resonance.
Bode BE, Margraf D, Plackmeyer J, Durner G, Prisner TF, Schiemann O., J. Am. Chem. Soc. 129(21), 2007
PMID: 17487970
Bode BE, Margraf D, Plackmeyer J, Durner G, Prisner TF, Schiemann O., J. Am. Chem. Soc. 129(21), 2007
PMID: 17487970
Assessing oligomerization of membrane proteins by four-pulse DEER: pH-dependent dimerization of NhaA Na+/H+ antiporter of E. coli.
Hilger D, Jung H, Padan E, Wegener C, Vogel KP, Steinhoff HJ, Jeschke G., Biophys. J. 89(2), 2005
PMID: 15894644
Hilger D, Jung H, Padan E, Wegener C, Vogel KP, Steinhoff HJ, Jeschke G., Biophys. J. 89(2), 2005
PMID: 15894644
Maryasov, Appl. Magn. Reson. 18(), 2000
Milov, Appl. Magn. Reson. 26(), 2004
Flexibility of shape-persistent molecular building blocks composed of p-phenylene and ethynylene units.
Jeschke G, Sajid M, Schulte M, Ramezanian N, Volkov A, Zimmermann H, Godt A., J. Am. Chem. Soc. 132(29), 2010
PMID: 20590116
Jeschke G, Sajid M, Schulte M, Ramezanian N, Volkov A, Zimmermann H, Godt A., J. Am. Chem. Soc. 132(29), 2010
PMID: 20590116
Sajid, Chem.–Eur. J. 15(), 2009
Flexibility of shape-persistent molecular building blocks composed of p-phenylene and ethynylene units.
Jeschke G, Sajid M, Schulte M, Ramezanian N, Volkov A, Zimmermann H, Godt A., J. Am. Chem. Soc. 132(29), 2010
PMID: 20590116
Jeschke G, Sajid M, Schulte M, Ramezanian N, Volkov A, Zimmermann H, Godt A., J. Am. Chem. Soc. 132(29), 2010
PMID: 20590116
PELDOR measurements on a nitroxide-labeled Cu(II) porphyrin: orientation selection, spin-density distribution, and conformational flexibility.
Bode BE, Plackmeyer J, Prisner TF, Schiemann O., J Phys Chem A 112(23), 2008
PMID: 18491846
Bode BE, Plackmeyer J, Prisner TF, Schiemann O., J Phys Chem A 112(23), 2008
PMID: 18491846
EPR probes with well-defined, long distances between two or three unpaired electrons
Godt A, Franzen C, Veit S, Enkelmann V V, Pannier M, Jeschke G., J. Org. Chem. 65(22), 2000
PMID: 11076617
Godt A, Franzen C, Veit S, Enkelmann V V, Pannier M, Jeschke G., J. Org. Chem. 65(22), 2000
PMID: 11076617
Dead-time free measurement of dipole-dipole interactions between electron spins.
Pannier M, Veit S, Godt A, Jeschke G, Spiess HW., J. Magn. Reson. 142(2), 2000
PMID: 10648151
Pannier M, Veit S, Godt A, Jeschke G, Spiess HW., J. Magn. Reson. 142(2), 2000
PMID: 10648151
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 23487036
PubMed | Europe PMC
Suchen in