Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors
de Vries H, Rüegsegger U, Hübner W, Friedlein A, Langen H, Keller W (2000)
The EMBO journal 19(21): 5895-5904.
Zeitschriftenaufsatz
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Autor*in
de Vries, H;
Rüegsegger, U;
Hübner, WolfgangUniBi ;
Friedlein, A;
Langen, H;
Keller, W
Einrichtung
Abstract / Bemerkung
Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Five of the factors have been purified and most of their components cloned, but cleavage factor II(m) (CF II(m)) remained uncharacterized. We have purified CF II(m) from HeLa cell nuclear extract by several chromatographic steps. During purification, CF II(m) activity separated into two components, one essential (CF IIA(m)) and one stimulatory (CF IIB(m)) for the cleavage reaction. CF IIA(m) fractions contain the human homologs of two yeast 3' end processing factors, Pcf11p and Clp1p, as well as cleavage factor I(m) (CF I(m)) and several splicing and transcription factors. We report the cloning of hClp1 and show that it is a genuine subunit of CF IIA(m). Antibodies directed against hClp1 deplete cleavage activity, but not polyadenylation activity from HeLa cell nuclear extract. hClp1 interacts with CF I(m) and the cleavage and polyadenylation specificity factor CPSF, suggesting that it bridges these two 3' end processing factors within the cleavage complex.
Stichworte
RNA-Binding Proteins/genetics;
RNA-Binding Proteins/chemistry;
Fungal/metabolism;
RNA;
RNA Splicing;
Post-Transcriptional;
RNA Processing;
RNA Precursors/metabolism;
Protein Subunits;
Molecular Sequence Data;
Humans;
HeLa Cells;
Fungal Proteins/genetics;
Fungal Proteins/chemistry;
Molecular;
Evolution;
DNA Primers/genetics;
Conserved Sequence;
Amino Acid Sequence;
Base Sequence;
RNA-Binding Proteins/metabolism;
Saccharomyces cerevisiae/genetics;
Saccharomyces cerevisiae/metabolism;
Sequence Homology;
Amino Acid;
Transcription;
Genetic;
mRNA Cleavage and Polyadenylation Factors
Erscheinungsjahr
2000
Zeitschriftentitel
The EMBO journal
Band
19
Ausgabe
21
Seite(n)
5895-5904
ISSN
0261-4189
eISSN
1460-2075
Page URI
https://pub.uni-bielefeld.de/record/2577035
Zitieren
de Vries H, Rüegsegger U, Hübner W, Friedlein A, Langen H, Keller W. Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors. The EMBO journal. 2000;19(21):5895-5904.
de Vries, H., Rüegsegger, U., Hübner, W., Friedlein, A., Langen, H., & Keller, W. (2000). Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors. The EMBO journal, 19(21), 5895-5904. doi:10.1093/emboj/19.21.5895
de Vries, H, Rüegsegger, U, Hübner, Wolfgang, Friedlein, A, Langen, H, and Keller, W. 2000. “Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors”. The EMBO journal 19 (21): 5895-5904.
de Vries, H., Rüegsegger, U., Hübner, W., Friedlein, A., Langen, H., and Keller, W. (2000). Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors. The EMBO journal 19, 5895-5904.
de Vries, H., et al., 2000. Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors. The EMBO journal, 19(21), p 5895-5904.
H. de Vries, et al., “Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors”, The EMBO journal, vol. 19, 2000, pp. 5895-5904.
de Vries, H., Rüegsegger, U., Hübner, W., Friedlein, A., Langen, H., Keller, W.: Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors. The EMBO journal. 19, 5895-5904 (2000).
de Vries, H, Rüegsegger, U, Hübner, Wolfgang, Friedlein, A, Langen, H, and Keller, W. “Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors”. The EMBO journal 19.21 (2000): 5895-5904.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
INTERPRO
1 Eintrag gefunden, die diesen Artikel zitieren
Pre-mRNA_cleavage_Clp1 (INTERPRO: IPR010655)
Protein family/domain name: Pre-mRNA cleavage complex subunit Clp1
Protein family/domain name: Pre-mRNA cleavage complex subunit Clp1
OMIM
2 Einträge gefunden, die diesen Artikel zitieren
UNIPROT
7 Einträge gefunden, die diesen Artikel zitieren
Pre-mRNA cleavage complex 2 protein Pcf11 (UNIPROT: A0A0C4DGU6)
Organism: Homo sapiens
Download in FASTA format
Organism: Homo sapiens
Download in FASTA format
Polyribonucleotide 5'-hydroxyl-kinase Clp1 (UNIPROT: Q92989)
Organism: Homo sapiens
Download in FASTA format
Organism: Homo sapiens
Download in FASTA format
Pre-mRNA cleavage complex 2 protein Pcf11 (UNIPROT: O94913)
Organism: Homo sapiens
Download in FASTA format
Organism: Homo sapiens
Download in FASTA format
mRNA cleavage and polyadenylation factor CLP1 (UNIPROT: Q08685)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Download in FASTA format
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Download in FASTA format
Protein PCF11 (UNIPROT: P39081)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Download in FASTA format
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Download in FASTA format
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Ryan K, Khleborodova A, Pan J, Ryan XP., RNA 15(3), 2009
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Shi Y, Di Giammartino DC, Taylor D, Sarkeshik A, Rice WJ, Yates JR, Frank J, Manley JL., Mol Cell 33(3), 2009
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Shi Y, Di Giammartino DC, Taylor D, Sarkeshik A, Rice WJ, Yates JR, Frank J, Manley JL., Mol Cell 33(3), 2009
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Jain R, Shuman S., RNA 15(5), 2009
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Jain R, Shuman S., RNA 15(5), 2009
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Polyadenylation releases mRNA from RNA polymerase II in a process that is licensed by splicing.
Rigo F, Martinson HG., RNA 15(5), 2009
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Richard P, Manley JL., Genes Dev 23(11), 2009
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Yoshinari S, Shiba T, Inaoka DK, Itoh T, Kurisu G, Harada S, Kita K, Watanabe Y., Nucleic Acids Res 37(14), 2009
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Rigo F, Martinson HG., Mol Cell Biol 28(2), 2008
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Human Pcf11 enhances degradation of RNA polymerase II-associated nascent RNA and transcriptional termination.
West S, Proudfoot NJ., Nucleic Acids Res 36(3), 2008
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The 3' processing factor CstF functions in the DNA repair response.
Mirkin N, Fonseca D, Mohammed S, Cevher MA, Manley JL, Kleiman FE., Nucleic Acids Res 36(6), 2008
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Molecular dissection of mRNA poly(A) tail length control in yeast.
Viphakone N, Voisinet-Hakil F, Minvielle-Sebastia L., Nucleic Acids Res 36(7), 2008
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Viphakone N, Voisinet-Hakil F, Minvielle-Sebastia L., Nucleic Acids Res 36(7), 2008
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Protein factors in pre-mRNA 3'-end processing.
Mandel CR, Bai Y, Tong L., Cell Mol Life Sci 65(7-8), 2008
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Mandel CR, Bai Y, Tong L., Cell Mol Life Sci 65(7-8), 2008
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Finishing touches: post-translational modification of protein factors involved in mammalian pre-mRNA 3' end formation.
Ryan K, Bauer DL., Int J Biochem Cell Biol 40(11), 2008
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Crystal structure of the 25 kDa subunit of human cleavage factor Im.
Coseno M, Martin G, Berger C, Gilmartin G, Keller W, Doublié S., Nucleic Acids Res 36(10), 2008
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Coseno M, Martin G, Berger C, Gilmartin G, Keller W, Doublié S., Nucleic Acids Res 36(10), 2008
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Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling.
Hunt AG, Xu R, Addepalli B, Rao S, Forbes KP, Meeks LR, Xing D, Mo M, Zhao H, Bandyopadhyay A, Dampanaboina L, Marion A, Von Lanken C, Li QQ., BMC Genomics 9(), 2008
PMID: 18479511
Hunt AG, Xu R, Addepalli B, Rao S, Forbes KP, Meeks LR, Xing D, Mo M, Zhao H, Bandyopadhyay A, Dampanaboina L, Marion A, Von Lanken C, Li QQ., BMC Genomics 9(), 2008
PMID: 18479511
Arabidopsis CLP1-SIMILAR PROTEIN3, an ortholog of human polyadenylation factor CLP1, functions in gametophyte, embryo, and postembryonic development.
Xing D, Zhao H, Li QQ., Plant Physiol 148(4), 2008
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Noble CG, Beuth B, Taylor IA., Nucleic Acids Res 35(1), 2007
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Pre-mRNA 3' cleavage is reversibly inhibited in vitro by cleavage factor dephosphorylation.
Ryan K., RNA Biol 4(1), 2007
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Nucleases of the metallo-beta-lactamase family and their role in DNA and RNA metabolism.
Dominski Z., Crit Rev Biochem Mol Biol 42(2), 2007
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Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals.
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The human RNA kinase hClp1 is active on 3' transfer RNA exons and short interfering RNAs.
Weitzer S, Martinez J., Nature 447(7141), 2007
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Formation of the 3' end of histone mRNA: getting closer to the end.
Dominski Z, Marzluff WF., Gene 396(2), 2007
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The poly(A)-dependent transcriptional pause is mediated by CPSF acting on the body of the polymerase.
Nag A, Narsinh K, Martinson HG., Nat Struct Mol Biol 14(7), 2007
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Nag A, Narsinh K, Martinson HG., Nat Struct Mol Biol 14(7), 2007
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Transcription termination factor Pcf11 limits the processivity of Pol II on an HIV provirus to repress gene expression.
Zhang Z, Klatt A, Henderson AJ, Gilmour DS., Genes Dev 21(13), 2007
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Vethantham V, Rao N, Manley JL., Mol Cell Biol 27(24), 2007
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Pcf11 is a termination factor in Drosophila that dismantles the elongation complex by bridging the CTD of RNA polymerase II to the nascent transcript.
Zhang Z, Gilmour DS., Mol Cell 21(1), 2006
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Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.
Kyburz A, Friedlein A, Langen H, Keller W., Mol Cell 23(2), 2006
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Kyburz A, Friedlein A, Langen H, Keller W., Mol Cell 23(2), 2006
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Entamoeba histolytica: comparative genomics of the pre-mRNA 3' end processing machinery.
López-Camarillo C, Orozco E, Marchat LA., Exp Parasitol 110(3), 2005
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Symplekin and multiple other polyadenylation factors participate in 3'-end maturation of histone mRNAs.
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Wallace AM, Denison TL, Attaya EN, MacDonald CC., Biol Reprod 70(4), 2004
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Altering the expression in mice of genes by modifying their 3' regions.
Kakoki M, Tsai YS, Kim HS, Hatada S, Ciavatta DJ, Takahashi N, Arnold LW, Maeda N, Smithies O., Dev Cell 6(4), 2004
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Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3' end formation.
Paushkin SV, Patel M, Furia BS, Peltz SW, Trotta CR., Cell 117(3), 2004
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Proudfoot N., Curr Opin Cell Biol 16(3), 2004
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Sadowski M, Dichtl B, Hübner W, Keller W., EMBO J 22(9), 2003
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The role of the yeast cleavage and polyadenylation factor subunit Ydh1p/Cft2p in pre-mRNA 3'-end formation.
Kyburz A, Sadowski M, Dichtl B, Keller W., Nucleic Acids Res 31(14), 2003
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Kyburz A, Sadowski M, Dichtl B, Keller W., Nucleic Acids Res 31(14), 2003
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The 3' ends of human pre-snRNAs are produced by RNA polymerase II CTD-dependent RNA processing.
Uguen P, Murphy S., EMBO J 22(17), 2003
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SRm160 splicing coactivator promotes transcript 3'-end cleavage.
McCracken S, Lambermon M, Blencowe BJ., Mol Cell Biol 22(1), 2002
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Integrating mRNA processing with transcription.
Proudfoot NJ, Furger A, Dye MJ., Cell 108(4), 2002
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Ryan K, Murthy KG, Kaneko S, Manley JL., Mol Cell Biol 22(6), 2002
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Comparative genomics and evolution of proteins involved in RNA metabolism.
Anantharaman V, Koonin EV, Aravind L., Nucleic Acids Res 30(7), 2002
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Symplekin, a constitutive protein of karyo- and cytoplasmic particles involved in mRNA biogenesis in Xenopus laevis oocytes.
Hofmann I, Schnölzer M, Kaufmann I, Franke WW., Mol Biol Cell 13(5), 2002
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Hofmann I, Schnölzer M, Kaufmann I, Franke WW., Mol Biol Cell 13(5), 2002
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The mRNA assembly line: transcription and processing machines in the same factory.
Bentley D., Curr Opin Cell Biol 14(3), 2002
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Bentley D., Curr Opin Cell Biol 14(3), 2002
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Chimeric human CstF-77/Drosophila Suppressor of forked proteins rescue suppressor of forked mutant lethality and mRNA 3' end processing in Drosophila.
Benoit B, Juge F, Iral F, Audibert A, Simonelig M., Proc Natl Acad Sci U S A 99(16), 2002
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Benoit B, Juge F, Iral F, Audibert A, Simonelig M., Proc Natl Acad Sci U S A 99(16), 2002
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A novel function for the U2AF 65 splicing factor in promoting pre-mRNA 3'-end processing.
Millevoi S, Geraghty F, Idowu B, Tam JL, Antoniou M, Vagner S., EMBO Rep 3(9), 2002
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Millevoi S, Geraghty F, Idowu B, Tam JL, Antoniou M, Vagner S., EMBO Rep 3(9), 2002
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Polyadenylation: a tail of two complexes.
Proudfoot N, O'Sullivan J., Curr Biol 12(24), 2002
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Proudfoot N, O'Sullivan J., Curr Biol 12(24), 2002
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The BARD1-CstF-50 interaction links mRNA 3' end formation to DNA damage and tumor suppression.
Kleiman FE, Manley JL., Cell 104(5), 2001
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Kleiman FE, Manley JL., Cell 104(5), 2001
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Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I.
Gross S, Moore C., Proc Natl Acad Sci U S A 98(11), 2001
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Gross S, Moore C., Proc Natl Acad Sci U S A 98(11), 2001
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Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation.
Gross S, Moore CL., Mol Cell Biol 21(23), 2001
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Gross S, Moore CL., Mol Cell Biol 21(23), 2001
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Mpe1, a zinc knuckle protein, is an essential component of yeast cleavage and polyadenylation factor required for the cleavage and polyadenylation of mRNA.
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