Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination

Sadowski M, Dichtl B, Hübner W, Keller W (2003)
The EMBO journal 22(9): 2167-2177.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Sadowski, Martin; Dichtl, Bernhard; Hübner, WolfgangUniBi ; Keller, Walter
Abstract / Bemerkung
Pcf11p, an essential subunit of the yeast cleavage factor IA, is required for pre-mRNA 3' end processing, binds to the C-terminal domain (CTD) of the largest subunit of RNA polymerase II (RNAP II) and is involved in transcription termination. We show that the conserved CTD interaction domain (CID) of Pcf11p is essential for cell viability. Interestingly, the CTD binding and 3' end processing activities of Pcf11p can be functionally uncoupled from each other and provided by distinct Pcf11p fragments in trans. Impaired CTD binding did not affect the 3' end processing activity of Pcf11p and a deficiency of Pcf11p in 3' end processing did not prevent CTD binding. Transcriptional run-on analysis with the CYC1 gene revealed that loss of cleavage activity did not correlate with a defect in transcription termination, whereas loss of CTD binding did. We conclude that Pcf11p is a bifunctional protein and that transcript cleavage is not an obligatory step prior to RNAP II termination.
Stichworte
Saccharomyces cerevisiae Proteins/physiology; Saccharomyces cerevisiae Proteins/metabolism; Saccharomyces cerevisiae Proteins/chemistry; Saccharomyces cerevisiae/metabolism; Messenger/metabolism; RNA; Post-Transcriptional; RNA Processing; RNA Precursors/metabolism; Protein Binding; Phosphorylation; Amino Acid Sequence; Molecular Sequence Data; Two-Hybrid System Techniques; mRNA Cleavage and Polyadenylation Factors/chemistry; mRNA Cleavage and Polyadenylation Factors/metabolism; mRNA Cleavage and Polyadenylation Factors/physiology
Erscheinungsjahr
2003
Zeitschriftentitel
The EMBO journal
Band
22
Ausgabe
9
Seite(n)
2167-2177
ISSN
0261-4189
eISSN
1460-2075
Page URI
https://pub.uni-bielefeld.de/record/2576993

Zitieren

Sadowski M, Dichtl B, Hübner W, Keller W. Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination. The EMBO journal. 2003;22(9):2167-2177.
Sadowski, M., Dichtl, B., Hübner, W., & Keller, W. (2003). Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination. The EMBO journal, 22(9), 2167-2177. doi:10.1093/emboj/cdg200
Sadowski, Martin, Dichtl, Bernhard, Hübner, Wolfgang, and Keller, Walter. 2003. “Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination”. The EMBO journal 22 (9): 2167-2177.
Sadowski, M., Dichtl, B., Hübner, W., and Keller, W. (2003). Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination. The EMBO journal 22, 2167-2177.
Sadowski, M., et al., 2003. Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination. The EMBO journal, 22(9), p 2167-2177.
M. Sadowski, et al., “Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination”, The EMBO journal, vol. 22, 2003, pp. 2167-2177.
Sadowski, M., Dichtl, B., Hübner, W., Keller, W.: Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination. The EMBO journal. 22, 2167-2177 (2003).
Sadowski, Martin, Dichtl, Bernhard, Hübner, Wolfgang, and Keller, Walter. “Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination”. The EMBO journal 22.9 (2003): 2167-2177.

86 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Selective Roles of Vertebrate PCF11 in Premature and Full-Length Transcript Termination.
Kamieniarz-Gdula K, Gdula MR, Panser K, Nojima T, Monks J, Wiśniewski JR, Riepsaame J, Brockdorff N, Pauli A, Proudfoot NJ., Mol Cell 74(1), 2019
PMID: 30819644
Writing a wrong: Coupled RNA polymerase II transcription and RNA quality control.
Peck SA, Hughes KD, Victorino JF, Mosley AL., Wiley Interdiscip Rev RNA 10(4), 2019
PMID: 30848101
Targeting the Polyadenylation Signal of Pre-mRNA: A New Gene Silencing Approach for Facioscapulohumeral Dystrophy.
Marsollier AC, Joubert R, Mariot V, Dumonceaux J., Int J Mol Sci 19(5), 2018
PMID: 29751519
Reconstitution of mammalian cleavage factor II involved in 3' processing of mRNA precursors.
Schäfer P, Tüting C, Schönemann L, Kühn U, Treiber T, Treiber N, Ihling C, Graber A, Keller W, Meister G, Sinz A, Wahle E., RNA 24(12), 2018
PMID: 30139799
The C terminus of Pcf11 forms a novel zinc-finger structure that plays an essential role in mRNA 3'-end processing.
Yang F, Hsu P, Lee SD, Yang W, Hoskinson D, Xu W, Moore C, Varani G., RNA 23(1), 2017
PMID: 27780845
The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA.
Wittmann S, Renner M, Watts BR, Adams O, Huseyin M, Baejen C, El Omari K, Kilchert C, Heo DH, Kecman T, Cramer P, Grimes JM, Vasiljeva L., Nat Commun 8(), 2017
PMID: 28367989
Distinct roles of Pcf11 zinc-binding domains in pre-mRNA 3'-end processing.
Guéguéniat J, Dupin AF, Stojko J, Beaurepaire L, Cianférani S, Mackereth CD, Minvielle-Sébastia L, Fribourg S., Nucleic Acids Res 45(17), 2017
PMID: 28973460
Determinants of Amyloid Formation for the Yeast Termination Factor Nab3.
O'Rourke TW, Reines D., PLoS One 11(3), 2016
PMID: 26954508
KDM5 lysine demethylases are involved in maintenance of 3'UTR length.
Blair LP, Liu Z, Labitigan RL, Wu L, Zheng D, Xia Z, Pearson EL, Nazeer FI, Cao J, Lang SM, Rines RJ, Mackintosh SG, Moore CL, Li W, Tian B, Tackett AJ, Yan Q., Sci Adv 2(11), 2016
PMID: 28138513
Fail-safe transcription termination: Because one is never enough.
Lemay JF, Bachand F., RNA Biol 12(9), 2015
PMID: 26273910
Pcf11 orchestrates transcription termination pathways in yeast.
Grzechnik P, Gdula MR, Proudfoot NJ., Genes Dev 29(8), 2015
PMID: 25877920
RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7.
Schreieck A, Easter AD, Etzold S, Wiederhold K, Lidschreiber M, Cramer P, Passmore LA., Nat Struct Mol Biol 21(2), 2014
PMID: 24413056
Structural basis for ATP loss by Clp1p in a G135R mutant protein.
Dupin AF, Fribourg S., Biochimie 101(), 2014
PMID: 24508575
Delineating the structural blueprint of the pre-mRNA 3'-end processing machinery.
Xiang K, Tong L, Manley JL., Mol Cell Biol 34(11), 2014
PMID: 24591651
Terminate and make a loop: regulation of transcriptional directionality.
Grzechnik P, Tan-Wong SM, Proudfoot NJ., Trends Biochem Sci 39(7), 2014
PMID: 24928762
The CTD code of RNA polymerase II: a structural view.
Jasnovidova O, Stefl R., Wiley Interdiscip Rev RNA 4(1), 2013
PMID: 23042580
Disengaging polymerase: terminating RNA polymerase II transcription in budding yeast.
Mischo HE, Proudfoot NJ., Biochim Biophys Acta 1829(1), 2013
PMID: 23085255
Making ends meet: coordination between RNA 3'-end processing and transcription initiation.
Andersen PK, Jensen TH, Lykke-Andersen S., Wiley Interdiscip Rev RNA 4(3), 2013
PMID: 23450686
Negative elongation factor (NELF) coordinates RNA polymerase II pausing, premature termination, and chromatin remodeling to regulate HIV transcription.
Natarajan M, Schiralli Lester GM, Lee C, Missra A, Wasserman GA, Steffen M, Gilmour DS, Henderson AJ., J Biol Chem 288(36), 2013
PMID: 23884411
The interaction of Pcf11 and Clp1 is needed for mRNA 3'-end formation and is modulated by amino acids in the ATP-binding site.
Ghazy MA, Gordon JM, Lee SD, Singh BN, Bohm A, Hampsey M, Moore C., Nucleic Acids Res 40(3), 2012
PMID: 21993299
An essential role for Clp1 in assembly of polyadenylation complex CF IA and Pol II transcription termination.
Haddad R, Maurice F, Viphakone N, Voisinet-Hakil F, Fribourg S, Minvielle-Sébastia L., Nucleic Acids Res 40(3), 2012
PMID: 21993300
The spt5 C-terminal region recruits yeast 3' RNA cleavage factor I.
Mayer A, Schreieck A, Lidschreiber M, Leike K, Martin DE, Cramer P., Mol Cell Biol 32(7), 2012
PMID: 22290438
Emerging Views on the CTD Code.
Zhang DW, Rodríguez-Molina JB, Tietjen JR, Nemec CM, Ansari AZ., Genet Res Int 2012(), 2012
PMID: 22567385
Transcription termination between polo and snap, two closely spaced tandem genes of D. melanogaster.
Henriques T, Ji Z, Tan-Wong SM, Carmo AM, Tian B, Proudfoot NJ, Moreira A., Transcription 3(4), 2012
PMID: 22992452
The RNA polymerase II CTD coordinates transcription and RNA processing.
Hsin JP, Manley JL., Genes Dev 26(19), 2012
PMID: 23028141
Pre-mRNA 3'-end processing complex assembly and function.
Chan S, Choi EA, Shi Y., Wiley Interdiscip Rev RNA 2(3), 2011
PMID: 21957020
Nuclear mRNA quality control in yeast is mediated by Nrd1 co-transcriptional recruitment, as revealed by the targeting of Rho-induced aberrant transcripts.
Honorine R, Mosrin-Huaman C, Hervouet-Coste N, Libri D, Rahmouni AR., Nucleic Acids Res 39(7), 2011
PMID: 21113025
Unravelling the means to an end: RNA polymerase II transcription termination.
Kuehner JN, Pearson EL, Moore C., Nat Rev Mol Cell Biol 12(5), 2011
PMID: 21487437
Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1.
Creamer TJ, Darby MM, Jamonnak N, Schaughency P, Hao H, Wheelan SJ, Corden JL., PLoS Genet 7(10), 2011
PMID: 22028667
Coupled RNA polymerase II transcription and 3' end formation with yeast whole-cell extracts.
Mariconti L, Loll B, Schlinkmann K, Wengi A, Meinhart A, Dichtl B., RNA 16(11), 2010
PMID: 20810619
Transcription termination by nuclear RNA polymerases.
Richard P, Manley JL., Genes Dev 23(11), 2009
PMID: 19487567
Involvement of Pta1, Pcf11 and a KlCYC1 AU-rich element in alternative RNA 3'-end processing selection in yeast.
Seoane S, Lamas-Maceiras M, Rodríguez-Torres AM, Freire-Picos MA., FEBS Lett 583(17), 2009
PMID: 19646984
Protein factors in pre-mRNA 3'-end processing.
Mandel CR, Bai Y, Tong L., Cell Mol Life Sci 65(7-8), 2008
PMID: 18158581
Nuclear mRNA surveillance in THO/sub2 mutants is triggered by inefficient polyadenylation.
Saguez C, Schmid M, Olesen JR, Ghazy MA, Qu X, Poulsen MB, Nasser T, Moore C, Jensen TH., Mol Cell 31(1), 2008
PMID: 18614048
The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain.
Vasiljeva L, Kim M, Mutschler H, Buratowski S, Meinhart A., Nat Struct Mol Biol 15(8), 2008
PMID: 18660819
Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice.
Gudipati RK, Villa T, Boulay J, Libri D., Nat Struct Mol Biol 15(8), 2008
PMID: 18660821
Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation.
Dermody JL, Dreyfuss JM, Villén J, Ogundipe B, Gygi SP, Park PJ, Ponticelli AS, Moore CL, Buratowski S, Bucheli ME., PLoS One 3(9), 2008
PMID: 18818768
Coupling of transcription termination to RNAi.
Bahman Bahramian M., J Theor Biol 245(2), 2007
PMID: 17157879
Structure of a nucleotide-bound Clp1-Pcf11 polyadenylation factor.
Noble CG, Beuth B, Taylor IA., Nucleic Acids Res 35(1), 2007
PMID: 17151076
Polyadenylation site choice in yeast is affected by competition between Npl3 and polyadenylation factor CFI.
Bucheli ME, He X, Kaplan CD, Moore CL, Buratowski S., RNA 13(10), 2007
PMID: 17684230
The role of the Brr5/Ysh1 C-terminal domain and its homolog Syc1 in mRNA 3'-end processing in Saccharomyces cerevisiae.
Zhelkovsky A, Tacahashi Y, Nasser T, He X, Sterzer U, Jensen TH, Domdey H, Moore C., RNA 12(3), 2006
PMID: 16431986
RNA polymerase II CTD phosphopeptides compete with RNA for the interaction with Pcf11.
Hollingworth D, Noble CG, Taylor IA, Ramos A., RNA 12(4), 2006
PMID: 16497660
Regulation of yeast NRD1 expression by premature transcription termination.
Arigo JT, Carroll KL, Ames JM, Corden JL., Mol Cell 21(5), 2006
PMID: 16507362
Pause sites promote transcriptional termination of mammalian RNA polymerase II.
Gromak N, West S, Proudfoot NJ., Mol Cell Biol 26(10), 2006
PMID: 16648491
Distinct pathways for snoRNA and mRNA termination.
Kim M, Vasiljeva L, Rando OJ, Zhelkovsky A, Moore C, Buratowski S., Mol Cell 24(5), 2006
PMID: 17157255
Key features of the interaction between Pcf11 CID and RNA polymerase II CTD.
Noble CG, Hollingworth D, Martin SR, Ennis-Adeniran V, Smerdon SJ, Kelly G, Taylor IA, Ramos A., Nat Struct Mol Biol 12(2), 2005
PMID: 15665873
Crosstalk between RNA metabolic pathways: an RNOMICS approach.
Beggs JD, Tollervey D., Nat Rev Mol Cell Biol 6(5), 2005
PMID: 15956981
Connections between mRNA 3' end processing and transcription termination.
Buratowski S., Curr Opin Cell Biol 17(3), 2005
PMID: 15901494
Entamoeba histolytica: comparative genomics of the pre-mRNA 3' end processing machinery.
López-Camarillo C, Orozco E, Marchat LA., Exp Parasitol 110(3), 2005
PMID: 15955310
A function of yeast mRNA cap methyltransferase, Abd1, in transcription by RNA polymerase II.
Schroeder SC, Zorio DA, Schwer B, Shuman S, Bentley D., Mol Cell 13(3), 2004
PMID: 14967145
Rna14-Rna15 assembly mediates the RNA-binding capability of Saccharomyces cerevisiae cleavage factor IA.
Noble CG, Walker PA, Calder LJ, Taylor IA., Nucleic Acids Res 32(11), 2004
PMID: 15215336
Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts.
Carroll KL, Pradhan DA, Granek JA, Clarke ND, Corden JL., Mol Cell Biol 24(14), 2004
PMID: 15226427
The role of the yeast cleavage and polyadenylation factor subunit Ydh1p/Cft2p in pre-mRNA 3'-end formation.
Kyburz A, Sadowski M, Dichtl B, Keller W., Nucleic Acids Res 31(14), 2003
PMID: 12853609
Current awareness on yeast.
, Yeast 20(13), 2003
PMID: 14598808

48 References

Daten bereitgestellt von Europe PubMed Central.

RNA polymerase II is an essential mRNA polyadenylation factor.
Hirose Y, Manley JL., Nature 395(6697), 1998
PMID: 9738505
Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II.
Rodriguez CR, Cho EJ, Keogh MC, Moore CL, Greenleaf AL, Buratowski S., Mol. Cell. Biol. 20(1), 2000
PMID: 10594013
The ends of the affair: capping and polyadenylation.
Shatkin AJ, Manley JL., Nat. Struct. Biol. 7(10), 2000
PMID: 11017188
Dynamic association of capping enzymes with transcribing RNA polymerase II.
Schroeder SC, Schwer B, Shuman S, Bentley D., Genes Dev. 14(19), 2000
PMID: 11018011
Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors.
de Vries H, Ruegsegger U, Hubner W, Friedlein A, Langen H, Keller W., EMBO J. 19(21), 2000
PMID: 11060040
Transcriptional termination factors for RNA polymerase II in yeast.
Aranda A, Proudfoot N., Mol. Cell 7(5), 2001
PMID: 11389847
Mechanism of poly(A) signal transduction to RNA polymerase II in vitro.
Tran DP, Kim SJ, Park NJ, Jew TM, Martinson HG., Mol. Cell. Biol. 21(21), 2001
PMID: 11585929
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain.
Cho EJ, Kobor MS, Kim M, Greenblatt J, Buratowski S., Genes Dev. 15(24), 2001
PMID: 11751637
Requirements of the RNA polymerase II C-terminal domain for reconstituting pre-mRNA 3' cleavage.
Ryan K, Murthy KG, Kaneko S, Manley JL., Mol. Cell. Biol. 22(6), 2002
PMID: 11865048
Integrating mRNA processing with transcription.
Proudfoot NJ, Furger A, Dye MJ., Cell 108(4), 2002
PMID: 11909521
Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II.
Licatalosi DD, Geiger G, Minet M, Schroeder S, Cilli K, McNeil JB, Bentley DL., Mol. Cell 9(5), 2002
PMID: 12049745
Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination.
Dichtl B, Blank D, Sadowski M, Hubner W, Weiser S, Keller W., EMBO J. 21(15), 2002
PMID: 12145212
Coupling of termination, 3' processing, and mRNA export.
Hammell CM, Gross S, Zenklusen D, Heath CV, Stutz F, Moore C, Cole CN., Mol. Cell. Biol. 22(18), 2002
PMID: 12192043
A role for SSU72 in balancing RNA polymerase II transcription elongation and termination.
Dichtl B, Blank D, Ohnacker M, Friedlein A, Roeder D, Langen H, Keller W., Mol. Cell 10(5), 2002
PMID: 12453421
Polyadenylation: a tail of two complexes.
Proudfoot N, O'Sullivan J., Curr. Biol. 12(24), 2002
PMID: 12498707
A role for chromatin remodeling in transcriptional termination by RNA polymerase II.
Alen C, Kent NA, Jones HS, O'Sullivan J, Aranda A, Proudfoot NJ., Mol. Cell 10(6), 2002
PMID: 12504018
How RNA polymerase II terminates transcription in higher eukaryotes.
Proudfoot NJ., Trends Biochem. Sci. 14(3), 1989
PMID: 2658217
RNA14 and RNA15 proteins as components of a yeast pre-mRNA 3'-end processing factor.
Minvielle-Sebastia L, Preker PJ, Keller W., Science 266(5191), 1994
PMID: 7992054
The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins.
Yuryev A, Patturajan M, Litingtung Y, Joshi RV, Gentile C, Gebara M, Corden JL., Proc. Natl. Acad. Sci. U.S.A. 93(14), 1996
PMID: 8692929
The C-terminal domain of RNA polymerase II couples mRNA processing to transcription.
McCracken S, Fong N, Yankulov K, Ballantyne S, Pan G, Greenblatt J, Patterson SD, Wickens M, Bentley DL., Nature 385(6614), 1997
PMID: 9002523
PCF11 encodes a third protein component of yeast cleavage and polyadenylation factor I.
Amrani N, Minet M, Wyers F, Dufour ME, Aggerbeck LP, Lacroute F., Mol. Cell. Biol. 17(3), 1997
PMID: 9032237
Yeast Pab1 interacts with Rna15 and participates in the control of the poly(A) tail length in vitro.
Amrani N, Minet M, Le Gouar M, Lacroute F, Wyers F., Mol. Cell. Biol. 17(7), 1997
PMID: 9199303
The major yeast poly(A)-binding protein is associated with cleavage factor IA and functions in premessenger RNA 3'-end formation.
Minvielle-Sebastia L, Preker PJ, Wiederkehr T, Strahm Y, Keller W., Proc. Natl. Acad. Sci. U.S.A. 94(15), 1997
PMID: 9223284
Transcription factor TFIID recruits factor CPSF for formation of 3' end of mRNA.
Dantonel JC, Murthy KG, Manley JL, Tora L., Nature 389(6649), 1997
PMID: 9311784
A nuclear matrix protein interacts with the phosphorylated C-terminal domain of RNA polymerase II.
Patturajan M, Wei X, Berezney R, Corden JL., Mol. Cell. Biol. 18(4), 1998
PMID: 9528809
Coupling termination of transcription to messenger RNA maturation in yeast.
Birse CE, Minvielle-Sebastia L, Lee BA, Keller W, Proudfoot NJ., Science 280(5361), 1998
PMID: 9535662
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