Antifreeze glycopeptide diastereomers
Nagel L, Budke C, Dreyer A, Koop T, Sewald N (2012)
Beilstein Journal of Organic Chemistry 8: 1657-1667.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Einrichtung
Abstract / Bemerkung
Antifreeze glycopeptides (AFGPs) are a special class of biological antifreeze agents, which possess the property to inhibit ice growth in the body fluids of arctic and antarctic fish and, thus, enable life under these harsh conditions. AFGPs are composed of 4-55 tripeptide units -Ala-Ala-Thr- glycosylated at the threonine side chains. Despite the structural homology among all the fish species, divergence regarding the composition of the amino acids occurs in peptides from natural sources. Although AFGPs were discovered in the early 1960s, the adsorption mechanism of these macromolecules to the surface of the ice crystals has not yet been fully elucidated. Two AFGP diastereomers containing different amino acid configurations were synthesized to study the influence of amino acid stereochemistry on conformation and antifreeze activity. For this purpose, peptides containing monosaccharide-substituted allo-L- and D-threonine building blocks were assembled by solid-phase peptide synthesis (SPPS). The retro-inverso AFGP analogue contained all amino acids in D-configuration, while the allo-L-diastereomer was composed of L-amino acids, like native AFGPs, with replacement of L-threonine by its allo-L-diastereomer. Both glycopeptides were analyzed regarding their conformational properties, by circular dichroism (CD), and their ability to inhibit ice recrystallization in microphysical experiments.
Stichworte
circular dichroism;
bioorganic chemistry;
glycopeptides;
recrystallization;
ice;
microwave chemistry
Erscheinungsjahr
2012
Zeitschriftentitel
Beilstein Journal of Organic Chemistry
Band
8
Seite(n)
1657-1667
ISSN
1860-5397
eISSN
1860-5397
Page URI
https://pub.uni-bielefeld.de/record/2544246
Zitieren
Nagel L, Budke C, Dreyer A, Koop T, Sewald N. Antifreeze glycopeptide diastereomers. Beilstein Journal of Organic Chemistry. 2012;8:1657-1667.
Nagel, L., Budke, C., Dreyer, A., Koop, T., & Sewald, N. (2012). Antifreeze glycopeptide diastereomers. Beilstein Journal of Organic Chemistry, 8, 1657-1667. doi:10.3762/bjoc.8.190
Nagel, Lilly, Budke, Carsten, Dreyer, Axel, Koop, Thomas, and Sewald, Norbert. 2012. “Antifreeze glycopeptide diastereomers”. Beilstein Journal of Organic Chemistry 8: 1657-1667.
Nagel, L., Budke, C., Dreyer, A., Koop, T., and Sewald, N. (2012). Antifreeze glycopeptide diastereomers. Beilstein Journal of Organic Chemistry 8, 1657-1667.
Nagel, L., et al., 2012. Antifreeze glycopeptide diastereomers. Beilstein Journal of Organic Chemistry, 8, p 1657-1667.
L. Nagel, et al., “Antifreeze glycopeptide diastereomers”, Beilstein Journal of Organic Chemistry, vol. 8, 2012, pp. 1657-1667.
Nagel, L., Budke, C., Dreyer, A., Koop, T., Sewald, N.: Antifreeze glycopeptide diastereomers. Beilstein Journal of Organic Chemistry. 8, 1657-1667 (2012).
Nagel, Lilly, Budke, Carsten, Dreyer, Axel, Koop, Thomas, and Sewald, Norbert. “Antifreeze glycopeptide diastereomers”. Beilstein Journal of Organic Chemistry 8 (2012): 1657-1667.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
7 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Synthesis and conformational preferences of short analogues of antifreeze glycopeptides (AFGP).
Urbańczyk M, Jewgiński M, Krzciuk-Gula J, Góra J, Latajka R, Sewald N., Beilstein J Org Chem 15(), 2019
PMID: 31435440
Urbańczyk M, Jewgiński M, Krzciuk-Gula J, Góra J, Latajka R, Sewald N., Beilstein J Org Chem 15(), 2019
PMID: 31435440
Antifreeze glycopeptides: from structure and activity studies to current approaches in chemical synthesis.
Urbańczyk M, Góra J, Latajka R, Sewald N., Amino Acids 49(2), 2017
PMID: 27913993
Urbańczyk M, Góra J, Latajka R, Sewald N., Amino Acids 49(2), 2017
PMID: 27913993
Anti-Biofilm Activity of a Self-Aggregating Peptide against Streptococcus mutans.
Ansari JM, Abraham NM, Massaro J, Murphy K, Smith-Carpenter J, Fikrig E., Front Microbiol 8(), 2017
PMID: 28392782
Ansari JM, Abraham NM, Massaro J, Murphy K, Smith-Carpenter J, Fikrig E., Front Microbiol 8(), 2017
PMID: 28392782
Utilization of bench-stable and readily available nickel(II) triflate for access to 1,2-cis-2-aminoglycosides.
Sletten ET, Ramadugu SK, Nguyen HM., Carbohydr Res 435(), 2016
PMID: 27816838
Sletten ET, Ramadugu SK, Nguyen HM., Carbohydr Res 435(), 2016
PMID: 27816838
Perturbation of long-range water dynamics as the mechanism for the antifreeze activity of antifreeze glycoprotein.
Mallajosyula SS, Vanommeslaeghe K, MacKerell AD., J Phys Chem B 118(40), 2014
PMID: 25137353
Mallajosyula SS, Vanommeslaeghe K, MacKerell AD., J Phys Chem B 118(40), 2014
PMID: 25137353
Synthesis of peptides and glycopeptides with polyproline II helical topology as potential antifreeze molecules.
Corcilius L, Santhakumar G, Stone RS, Capicciotti CJ, Joseph S, Matthews JM, Ben RN, Payne RJ., Bioorg Med Chem 21(12), 2013
PMID: 23523384
Corcilius L, Santhakumar G, Stone RS, Capicciotti CJ, Joseph S, Matthews JM, Ben RN, Payne RJ., Bioorg Med Chem 21(12), 2013
PMID: 23523384
Antifreeze peptides and glycopeptides, and their derivatives: potential uses in biotechnology.
Bang JK, Lee JH, Murugan RN, Lee SG, Do H, Koh HY, Shim HE, Kim HC, Kim HJ., Mar Drugs 11(6), 2013
PMID: 23752356
Bang JK, Lee JH, Murugan RN, Lee SG, Do H, Koh HY, Shim HE, Kim HC, Kim HJ., Mar Drugs 11(6), 2013
PMID: 23752356
34 References
Daten bereitgestellt von Europe PubMed Central.
Solute effects on ice recrystallization: an assessment technique.
Knight CA, Hallett J, DeVries AL., Cryobiology 25(1), 1988
PMID: 3349811
Knight CA, Hallett J, DeVries AL., Cryobiology 25(1), 1988
PMID: 3349811
Comparison of the solution conformation and dynamics of antifreeze glycoproteins from Antarctic fish.
Lane AN, Hays LM, Tsvetkova N, Feeney RE, Crowe LM, Crowe JH., Biophys. J. 78(6), 2000
PMID: 10827996
Lane AN, Hays LM, Tsvetkova N, Feeney RE, Crowe LM, Crowe JH., Biophys. J. 78(6), 2000
PMID: 10827996
Nonequilibrium antifreeze peptides and the recrystallization of ice.
Knight CA, Wen D, Laursen RA., Cryobiology 32(1), 1995
PMID: 7697996
Knight CA, Wen D, Laursen RA., Cryobiology 32(1), 1995
PMID: 7697996
The role in cell binding of a beta-bend within the triple helical region in collagen alpha 1 (I) chain: structural and biological evidence for conformational tautomerism on fiber surface.
Bhatnagar RS, Qian JJ, Gough CA., J. Biomol. Struct. Dyn. 14(5), 1997
PMID: 9130077
Bhatnagar RS, Qian JJ, Gough CA., J. Biomol. Struct. Dyn. 14(5), 1997
PMID: 9130077
Conformational and dynamic properties of a 14 residue antifreeze glycopeptide from Antarctic cod.
Lane AN, Hays LM, Feeney RE, Crowe LM, Crowe JH., Protein Sci. 7(7), 1998
PMID: 9684888
Lane AN, Hays LM, Feeney RE, Crowe LM, Crowe JH., Protein Sci. 7(7), 1998
PMID: 9684888
Solvent dependence of PII conformation in model alanine peptides.
Liu Z, Chen K, Ng A, Shi Z, Woody RW, Kallenbach NR., J. Am. Chem. Soc. 126(46), 2004
PMID: 15548011
Liu Z, Chen K, Ng A, Shi Z, Woody RW, Kallenbach NR., J. Am. Chem. Soc. 126(46), 2004
PMID: 15548011
C-linked galactosyl serine AFGP analogues as potent recrystallization inhibitors.
Liu S, Ben RN., Org. Lett. 7(12), 2005
PMID: 15932204
Liu S, Ben RN., Org. Lett. 7(12), 2005
PMID: 15932204
New insights into alpha-GalNAc-Ser motif: influence of hydrogen bonding versus solvent interactions on the preferred conformation.
Corzana F, Busto JH, Jimenez-Oses G, Asensio JL, Jimenez-Barbero J, Peregrina JM, Avenoza A., J. Am. Chem. Soc. 128(45), 2006
PMID: 17090050
Corzana F, Busto JH, Jimenez-Oses G, Asensio JL, Jimenez-Barbero J, Peregrina JM, Avenoza A., J. Am. Chem. Soc. 128(45), 2006
PMID: 17090050
Ice recrystallization inhibition and molecular recognition of ice faces by poly(vinyl alcohol).
Budke C, Koop T., Chemphyschem 7(12), 2006
PMID: 17109452
Budke C, Koop T., Chemphyschem 7(12), 2006
PMID: 17109452
The importance of hydration for inhibiting ice recrystallization with C-linked antifreeze glycoproteins.
Czechura P, Tam RY, Dimitrijevic E, Murphy AV, Ben RN., J. Am. Chem. Soc. 130(10), 2008
PMID: 18275198
Czechura P, Tam RY, Dimitrijevic E, Murphy AV, Ben RN., J. Am. Chem. Soc. 130(10), 2008
PMID: 18275198
Ice recrystallization kinetics in the presence of synthetic antifreeze glycoprotein analogues using the framework of LSW theory.
Budke C, Heggemann C, Koch M, Sewald N, Koop T., J Phys Chem B 113(9), 2009
PMID: 19708116
Budke C, Heggemann C, Koch M, Sewald N, Koop T., J Phys Chem B 113(9), 2009
PMID: 19708116
Solution conformation of C-linked antifreeze glycoprotein analogues and modulation of ice recrystallization.
Tam RY, Rowley CN, Petrov I, Zhang T, Afagh NA, Woo TK, Ben RN., J. Am. Chem. Soc. 131(43), 2009
PMID: 19824639
Tam RY, Rowley CN, Petrov I, Zhang T, Afagh NA, Woo TK, Ben RN., J. Am. Chem. Soc. 131(43), 2009
PMID: 19824639
Antifreeze glycopeptide analogues: microwave-enhanced synthesis and functional studies.
Heggemann C, Budke C, Schomburg B, Majer Z, Wissbrock M, Koop T, Sewald N., Amino Acids 38(1), 2009
PMID: 19165574
Heggemann C, Budke C, Schomburg B, Majer Z, Wissbrock M, Koop T, Sewald N., Amino Acids 38(1), 2009
PMID: 19165574
Contiguous O-galactosylation of 4(R)-hydroxy-l-proline residues forms very stable polyproline II helices.
Owens NW, Stetefeld J, Lattova E, Schweizer F., J. Am. Chem. Soc. 132(14), 2010
PMID: 20334378
Owens NW, Stetefeld J, Lattova E, Schweizer F., J. Am. Chem. Soc. 132(14), 2010
PMID: 20334378
'Antifreeze' glycoproteins from polar fish.
Harding MM, Anderberg PI, Haymet AD., Eur. J. Biochem. 270(7), 2003
PMID: 12653993
Harding MM, Anderberg PI, Haymet AD., Eur. J. Biochem. 270(7), 2003
PMID: 12653993
Antifreeze glycoproteins: structure, conformation, and biological applications.
Bouvet V, Ben RN., Cell Biochem. Biophys. 39(2), 2003
PMID: 14515019
Bouvet V, Ben RN., Cell Biochem. Biophys. 39(2), 2003
PMID: 14515019
The polyproline II conformation in short alanine peptides is noncooperative.
Chen K, Liu Z, Kallenbach NR., Proc. Natl. Acad. Sci. U.S.A. 101(43), 2004
PMID: 15489268
Chen K, Liu Z, Kallenbach NR., Proc. Natl. Acad. Sci. U.S.A. 101(43), 2004
PMID: 15489268
Computed circular dichroism spectra for the evaluation of protein conformation.
Greenfield N, Fasman GD., Biochemistry 8(10), 1969
PMID: 5346390
Greenfield N, Fasman GD., Biochemistry 8(10), 1969
PMID: 5346390
Studies on the structure and activity of low molecular weight glycoproteins from an antarctic fish.
Lin Y, Duman JG, DeVries AL., Biochem. Biophys. Res. Commun. 46(1), 1972
PMID: 5006918
Lin Y, Duman JG, DeVries AL., Biochem. Biophys. Res. Commun. 46(1), 1972
PMID: 5006918
Antifreeze glycoproteins from the blood of an antarctic fish. The structure of the proline-containing glycopeptides.
Morris HR, Thompson MR, Osuga DT, Ahmed AI, Chan SM, Vandenheede JR, Feeney RE., J. Biol. Chem. 253(14), 1978
PMID: 670183
Morris HR, Thompson MR, Osuga DT, Ahmed AI, Chan SM, Vandenheede JR, Feeney RE., J. Biol. Chem. 253(14), 1978
PMID: 670183
[Synthesis of the glycopeptide O-beta-D-galactopyranosyl-(1 to 3)-O-(2-acetamido-2-desoxy-alpha-D-galactopyranosyl)-(1 to 3)-L-serine and -L-threonine].
Paulsen H, Holck JP., Carbohydr. Res. 109(), 1982
PMID: 6817915
Paulsen H, Holck JP., Carbohydr. Res. 109(), 1982
PMID: 6817915
Fish antifreeze protein and the freezing and recrystallization of ice.
Knight CA, DeVries AL, Oolman LD., Nature 308(5956), 1984
PMID: 6700733
Knight CA, DeVries AL, Oolman LD., Nature 308(5956), 1984
PMID: 6700733
Conformation of the antifreeze glycoprotein of polar fish.
Bush CA, Ralapati S, Matson GM, Yamasaki RB, Osuga DT, Yeh Y, Feeney RE., Arch. Biochem. Biophys. 232(2), 1984
PMID: 6087734
Bush CA, Ralapati S, Matson GM, Yamasaki RB, Osuga DT, Yeh Y, Feeney RE., Arch. Biochem. Biophys. 232(2), 1984
PMID: 6087734
Direct evidence for antifreeze glycoprotein adsorption onto an ice surface.
Brown RA, Yeh Y, Burcham TS, Feeney RE., Biopolymers 24(7), 1985
PMID: 4027344
Brown RA, Yeh Y, Burcham TS, Feeney RE., Biopolymers 24(7), 1985
PMID: 4027344
Purification and primary sequences of the major arginine-containing antifreeze glycopeptides from the fish Eleginus gracilis.
Burcham TS, Osuga DT, Rao BN, Bush CA, Feeney RE., J. Biol. Chem. 261(14), 1986
PMID: 3700395
Burcham TS, Osuga DT, Rao BN, Bush CA, Feeney RE., J. Biol. Chem. 261(14), 1986
PMID: 3700395
Antifreeze glycoprotein activity correlates with long-range protein-water dynamics.
Ebbinghaus S, Meister K, Born B, DeVries AL, Gruebele M, Havenith M., J. Am. Chem. Soc. 132(35), 2010
PMID: 20712311
Ebbinghaus S, Meister K, Born B, DeVries AL, Gruebele M, Havenith M., J. Am. Chem. Soc. 132(35), 2010
PMID: 20712311
Design and synthesis of antifreeze glycoproteins and mimics.
Garner J, Harding MM., Chembiochem 11(18), 2010
PMID: 21108270
Garner J, Harding MM., Chembiochem 11(18), 2010
PMID: 21108270
One-pot azidochlorination of glycals.
Plattner C, Hofener M, Sewald N., Org. Lett. 13(4), 2011
PMID: 21244046
Plattner C, Hofener M, Sewald N., Org. Lett. 13(4), 2011
PMID: 21244046
Synthesis of C-linked triazole-containing AFGP analogues and their ability to inhibit ice recrystallization.
Capicciotti CJ, Trant JF, Leclere M, Ben RN., Bioconjug. Chem. 22(4), 2011
PMID: 21456533
Capicciotti CJ, Trant JF, Leclere M, Ben RN., Bioconjug. Chem. 22(4), 2011
PMID: 21456533
Synthesis and characterization of natural and modified antifreeze glycopeptides: glycosylated foldamers.
Nagel L, Plattner C, Budke C, Majer Z, DeVries AL, Berkemeier T, Koop T, Sewald N., Amino Acids 41(3), 2011
PMID: 21603949
Nagel L, Plattner C, Budke C, Majer Z, DeVries AL, Berkemeier T, Koop T, Sewald N., Amino Acids 41(3), 2011
PMID: 21603949
Influence of sequential modifications and carbohydrate variations in synthetic AFGP analogues on conformation and antifreeze activity.
Nagel L, Budke C, Erdmann RS, Dreyer A, Wennemers H, Koop T, Sewald N., Chemistry 18(40), 2012
PMID: 22930587
Nagel L, Budke C, Erdmann RS, Dreyer A, Wennemers H, Koop T, Sewald N., Chemistry 18(40), 2012
PMID: 22930587
Conformational studies of a synthetic peptide corresponding to the repeat motif of C hordein.
Tatham AS, Drake AF, Shewry PR., Biochem. J. 259(2), 1989
PMID: 2719660
Tatham AS, Drake AF, Shewry PR., Biochem. J. 259(2), 1989
PMID: 2719660
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 23209499
PubMed | Europe PMC
Suchen in